BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781058|ref|YP_003065471.1| phage-related lysozyme
[Candidatus Liberibacter asiaticus str. psy62]
         (102 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781058|ref|YP_003065471.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 102

 Score =  208 bits (529), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQ 60
           MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQ
Sbjct: 1   MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQ 60

Query: 61  RVDAQDWEKAAEECKKWTKAGGQSLRGIENRRAEGATMLLNG 102
           RVDAQDWEKAAEECKKWTKAGGQSLRGIENRRAEGATMLLNG
Sbjct: 61  RVDAQDWEKAAEECKKWTKAGGQSLRGIENRRAEGATMLLNG 102


>gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 171

 Score =  154 bits (388), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 82/100 (82%)

Query: 1   MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQ 60
           MTIT KEAED LL D    L+LLL++SP LKS SENRLVAVADFVFNLGIGNYNKSTFKQ
Sbjct: 70  MTITEKEAEDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIGNYNKSTFKQ 129

Query: 61  RVDAQDWEKAAEECKKWTKAGGQSLRGIENRRAEGATMLL 100
           RVDAQDWEKAAEECKKWTKAGG+ L G+  RR     +LL
Sbjct: 130 RVDAQDWEKAAEECKKWTKAGGKVLPGLVKRRDAEVKLLL 169


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 21.6 bits (44), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 3   ITAKEAEDLLLSDLRSHLDLLLDASP 28
           +   EA+++L    R  ++ +LD+SP
Sbjct: 152 VVLDEADEMLDLGFRDDIEFILDSSP 177


>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 381

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 71  AEECKKWTKAGGQSL 85
           AE   KW K+GG+  
Sbjct: 150 AENINKWRKSGGKGF 164


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 466

 Score = 20.4 bits (41), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 5  AKEAEDLLLSDLRSHLDL 22
          AKEA DL ++    HLDL
Sbjct: 63 AKEAGDLGINIASCHLDL 80


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,938
Number of Sequences: 1233
Number of extensions: 1689
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 328,796
effective HSP length: 62
effective length of query: 40
effective length of database: 252,350
effective search space: 10094000
effective search space used: 10094000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 32 (16.9 bits)