RPSBLAST alignment for GI: 254781060 and conserved domain: TIGR01193

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 34/242 (14%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
            I+  ++L ++ +    I+G +GSGKSTL+ LL G   ++  +G+IL  G S+ D     
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHT 545

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
                 +L  Q P    G I+   L   L  +     ++     +         AE  I 
Sbjct: 546 LRQFINYLP-QEPYIFSGSILENLL---LGAKENVSQDEIWAACEI--------AE--IK 591

Query: 137 MDMLKRPLNLG---------FSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIA 186
            D+   PL             SGG+K+   + +  L +  + ILDE+ S LD I   KI 
Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651

Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG-YAE 245
               N L  QD++ + + H  RL    + D I VL +GKII+ G +   LD   NG YA 
Sbjct: 652 N---NLLNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQGSHDELLD--RNGFYAS 704

Query: 246 LI 247
           LI
Sbjct: 705 LI 706