RPSBLAST alignment for GI: 254781060 and conserved domain: TIGR03796
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710
Score = 42.2 bits (100), Expect = 1e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
SGG+++ EI + + PS+ ILDE S LD + KI LR + + +I+ H
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN---LRRRGCTCIIVAH-- 670
Query: 208 RLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
RL D I VL GK+++ G + L YA LI+
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHE-ELWAVGGAYARLIR 710