RPSBLAST alignment for GI: 254781060 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 80.5 bits (199), Expect = 4e-16
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 15/230 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++NL A ++I+ G++L V E+VA++G NG+GK+TL + G +G
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGS 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I + G I ERA GI + P + + + L + +R+A+ + L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---- 112
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
++ + K+ SGGE+++ I + + P L +LDE GL
Sbjct: 113 -----ERVYELFPRLKERRKQLAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
++ + + LR + + L++ R I D +VL G+++ G
Sbjct: 167 IVEEIFEAIRELRDEGVTILLVEQNARFALEIA-DRAYVLERGRVVLEGT 215