RPSBLAST alignment for GI: 254781060 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 49.4 bits (118), Expect = 1e-06
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IV 75
+ ++L V E+ IMG +GSGKSTL ++ E T+G +L G+ I S +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELR 97
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
E K I + FQ +P +++ + L Q R E+E + + +G+
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-------ERAAEALELVGL 150
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALR 194
K P L SGG ++ + + ++P + ++DE S LD + ++ + +
Sbjct: 151 EGWEHKYPDEL--SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 195 SQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
++ + ITH L ++ D I ++ +G++++ G
Sbjct: 209 ELQKTIVFITH--DLDEALRLGDRIAIMKDGRLVQVG 243