RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
         (249 letters)



>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
           assembly, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 251

 Score =  327 bits (840), Expect = 2e-90
 Identities = 142/249 (57%), Positives = 186/249 (74%), Gaps = 5/249 (2%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLEIK+L  + V+   EI++G+NL V+  EV AIMGPNGSGKSTL+Y + GH  YE+T G
Sbjct: 3   MLEIKDLHVE-VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +IL+ GE IL+ S  ERA  GIFLAFQYPVEIPG+    FL+ A+N +R AR     ++P
Sbjct: 62  EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG----ILP 117

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           +F +++++    LG++ + L+R +N GFSGGEKK  EILQ+ LLEP L ILDE DSGLDI
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
           DALKI A+G+NALR + R  LIITHYQRLL+YIKPD +HVL++G+I+K+GD  +A +LEE
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEE 237

Query: 241 NGYAELIKE 249
            GY  L + 
Sbjct: 238 KGYDWLKEV 246


>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
          Length = 252

 Score =  306 bits (787), Expect = 2e-84
 Identities = 139/246 (56%), Positives = 177/246 (71%), Gaps = 2/246 (0%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LEIKNL A +   + EI++GLNL +   E+ AIMGPNGSGKSTLS +++GH  Y+I  G
Sbjct: 7   ILEIKNLHASV--NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           DIL+KGESILD    ERA  GIFLAFQYP+EIPG+    FL++A N +RK +   EL   
Sbjct: 65  DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPL 124

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           +F   + +    +G++   L R +N GFSGGEKK  EILQM LL+  L ILDETDSGLDI
Sbjct: 125 EFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
           DALKI A+G+N L + + S ++ITHYQRLL+YIKPD +HV+ NGKIIKTGD  +A +LE+
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEK 244

Query: 241 NGYAEL 246
            GY  L
Sbjct: 245 KGYDWL 250


>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
           Fe-S cluster assembly, ATPase component.  Biosynthesis
           of iron-sulfur clusters (Fe-S) depends on multiprotein
           systems.  The SUF system of E. coli and Erwinia
           chrysanthemi is important for Fe-S biogenesis under
           stressful conditions.  The SUF system is made of six
           proteins: SufC is an atypical cytoplasmic ABC-ATPase,
           which forms a complex with SufB and SufD; SufA plays the
           role of a scaffold protein for assembly of iron-sulfur
           clusters and delivery to target proteins; SufS is a
           cysteine desulfurase which mobilizes the sulfur atom
           from cysteine and provides it to the cluster; SufE has
           no associated function yet..
          Length = 200

 Score =  259 bits (664), Expect = 5e-70
 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 42/242 (17%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LEIK+L   +     EI++G+NL ++  EV A+MGPNGSGKSTL+  + GH  YE+T G+
Sbjct: 1   LEIKDLHVSV--GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL+KGE I D    ERA  GIFLAFQYP EIPG+    FL                    
Sbjct: 59  ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-------------------- 98

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
                               R +N GFSGGEKK  EILQ+ LLEP L ILDE DSGLDID
Sbjct: 99  --------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
           AL++ A+ +N LR + +S LIITHYQRLL+YIKPD +HVL++G+I+K+GD  +AL++E+ 
Sbjct: 139 ALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKK 198

Query: 242 GY 243
           GY
Sbjct: 199 GY 200


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  This ABC transport system of the CbiMNQO family
           is involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most of
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 211

 Score =  107 bits (268), Expect = 4e-24
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 24/229 (10%)

Query: 3   EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
           E+KNL     D     +  ++L ++  E V I+GPNGSGKSTL  LL+G      T+G++
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEV 58

Query: 63  LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK------IALNEQRKARNEKE 116
           L  G+ +   S+ E   + + L FQ P         QF        +A   +     E+E
Sbjct: 59  LVDGKDLTKLSLKEL-RRKVGLVFQNP-------DDQFFGPTVEEEVAFGLENLGLPEEE 110

Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
           +       +V +    +G+     + P  L  SGG+K+   I  +  ++P + +LDE  +
Sbjct: 111 IE-----ERVEEALELVGLEGLRDRSPFTL--SGGQKQRVAIAGVLAMDPDILLLDEPTA 163

Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
           GLD    +   + +  L+++ ++ +I+TH   LL  +  D + VL +GK
Sbjct: 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL-ADRVIVLEDGK 211


>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
           subfamily is involved in the transport of the
           hydrophobic amino acids leucine, isoleucine and valine. 
           MJ1267 is a branched-chain amino acid transporter with
           29% similarity to both the LivF and LivG components of
           the E. coli  branched-chain amino acid transporter.
           MJ1267 contains an insertion from residues 114 to 123
           characteristic of LivG (Leucine-Isoleucine-Valine)
           homologs.  The branched-chain amino acid transporter
           from E. coli comprises a heterodimer of ABCs (LivF and
           LivG), a heterodimer of six-helix TM domains (LivM and
           LivH), and one of two alternative soluble periplasmic
           substrate binding proteins (LivK or LivJ)..
          Length = 236

 Score =  106 bits (267), Expect = 5e-24
 Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 12/218 (5%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  ++  V P E+  ++GPNG+GK+TL  L+SG      T+G +L+ GE I      E A
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIA 73

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-----ARNEKELLIPDFTRKVRKITAEL 133
             GI   FQ P   P + +++ + +A   +       AR  +E    +   +  ++   +
Sbjct: 74  RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE--REARERAEELLERV 131

Query: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
           G+     +    L  S G+++  EI +    +P L +LDE  +GL+ +  +  A+ +  L
Sbjct: 132 GLADLADRPAGEL--SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189

Query: 194 RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           R +  + L++ H   ++  +  D + VL  G++I  G 
Sbjct: 190 RERGITVLLVEHDMDVVMSLA-DRVTVLDQGRVIAEGT 226


>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
           component [Defense mechanisms].
          Length = 293

 Score = 99.3 bits (247), Expect = 9e-22
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ++E++NL  K    D   + G++ +VEP E+  ++GPNG+GK+TL  +L+G    + T+G
Sbjct: 4   VIEVRNLT-KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSG 60

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +IL  G  ++      +  + I    Q P   P + + + L+        ++ E E    
Sbjct: 61  EILVLGYDVVKEP--AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAE---- 114

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
               ++ ++    G+     K+      SGG K+   I    L +P L ILDE  SGLD 
Sbjct: 115 ---ERIEELLELFGLEDKANKKV--RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169

Query: 181 DALKIAAQGVNALRSQD-RSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           ++ +   + +  L  +   + L+ TH       +  D + +L++GKII  G 
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILNDGKIIAEGT 220


>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
           superfamily [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 1228

 Score = 96.0 bits (239), Expect = 8e-21
 Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 16/236 (6%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D +I++G++LK+   + VA++GP+GSGKSTL  LL+    Y+ T+G++L  GE I + ++
Sbjct: 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF--YDPTSGEVLIDGEDIRNLNL 422

Query: 75  VERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
               S+ I L  Q PV     I   +++ K     +      K     DF  K+      
Sbjct: 423 KWLRSQ-IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKL-----P 476

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
            G +  + +R + L  SGG+K+   I +  +  P + +LDE  S LD ++ ++  + ++ 
Sbjct: 477 DGYDTLVGERGVQL--SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK 534

Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
             S+ R+ +++ H  RL      D I V+  GKI++ G +   + L    Y+ L++
Sbjct: 535 A-SKGRTTIVVAH--RLSTIRNADKIAVMEEGKIVEQGTHDELIAL-GGIYSSLVR 586



 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 22/239 (9%)

Query: 15   DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
            D  ++  L+L +   + VA++GP+GSGKST+  LL   + Y+  AG +   G  I D + 
Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE--RFYDPDAGKVKIDGVDIKDLN- 1058

Query: 75   VERASKGIFLAFQYPV----EIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
            ++   K I L  Q PV     I   I     +++  E  +A   K     +F       +
Sbjct: 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA--AKLANAHNFI-----SS 1111

Query: 131  AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
               G +  + +R + L  SGG+K+   I +  L  P + +LDE  S LD ++ ++  + +
Sbjct: 1112 LPQGYDTRVGERGVQL--SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169

Query: 191  NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG-YAELIK 248
            +    + R+ ++I H  RL      D I VL NGK+++ G +     L + G Y  L++
Sbjct: 1170 DRAM-EGRTTIVIAH--RLSTIQNADVIAVLKNGKVVEQGTHDEL--LAKRGIYFRLVQ 1223


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 35/250 (14%)

Query: 1   MLEIKNLR--AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE-- 56
           +LE++NL             +R ++ +VEP E++ I+G +GSGKSTL+  L G       
Sbjct: 5   LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64

Query: 57  ITAGDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN 113
           IT+G+++  G  +L  S  E      K I + FQ P+             +LN      +
Sbjct: 65  ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT------------SLNPVMTIGD 112

Query: 114 E-KELLI-------PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLE 165
           + +E L         +  ++  ++  ++G+     +       SGG ++   I     L+
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172

Query: 166 PSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPDTIHVL 221
           P L I DE  + LD+      AQ ++ L+   R    + L ITH   ++  +  D + V+
Sbjct: 173 PKLLIADEPTTALDVT---TQAQILDLLKDLQRELGMAVLFITHDLGVVAELA-DRVVVM 228

Query: 222 HNGKIIKTGD 231
           + G+I++TG 
Sbjct: 229 YKGEIVETGP 238



 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 28/242 (11%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI-LDWSIVER 77
           +  ++  +   E + ++G +GSGKSTL+ +L+G      ++G I++ G+ + L    + R
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQDLDLTGGELRR 364

Query: 78  ASKGIFLAFQ------YPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
             + I + FQ       P    G I+ + L+I        R            +V ++  
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRA----------RVAELLE 414

Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
            +G+  + L R  +   SGG+++   I +   LEP L ILDE  S LD+    + AQ +N
Sbjct: 415 LVGLPPEFLDRYPHE-LSGGQRQRVAIARALALEPKLLILDEPVSALDV---SVQAQVLN 470

Query: 192 AL-RSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
            L   Q+    ++L I+H   ++ YI  D + V+++G+I++ G      +  ++ Y   +
Sbjct: 471 LLKDLQEELGLTYLFISHDLAVVRYI-ADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529

Query: 248 KE 249
             
Sbjct: 530 LA 531


>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
           biosynthesis, ATPase and permease components [Energy
           production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 559

 Score = 90.7 bits (225), Expect = 4e-19
 Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 17/239 (7%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
                 +  LNL ++  ++ A++G +G+GKSTL  LL G      T G+I   G  + D 
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDL 388

Query: 73  SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           S  E   K I    Q P    G I   +   +   +++       +  + +F  K     
Sbjct: 389 SP-EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK----- 442

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
              G++  + +    L  SGG+ +   + +  L   SL +LDE  + LD +  +I  Q +
Sbjct: 443 -PDGLDTVIGEGGAGL--SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
             L ++ ++ L+ITH  RL +    D I VL NG++++ G +   L  ++  YA L+K+
Sbjct: 500 QEL-AKQKTVLVITH--RLEDAADADRIVVLDNGRLVEQGTHE-ELSEKQGLYANLLKQ 554


>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
           [Carbohydrate transport and metabolism].
          Length = 500

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           + G++L V P EV A++G NG+GKSTL  +LSG   Y   +G+IL  G+ +   S  +  
Sbjct: 24  LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG--VYPPDSGEILIDGKPVAFSSPRDAL 81

Query: 79  SKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
           + GI    Q    +P + + +  FL      +    + K +      R+ R++ A LG++
Sbjct: 82  AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM-----RRRARELLARLGLD 136

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
           +D      +L  S  ++++ EI +    +  + ILDE  + L +   +     +  L++Q
Sbjct: 137 IDPDTLVGDL--SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
             + + I+H    +  I  D I VL +G+++ T   +     +E
Sbjct: 195 GVAIIYISHRLDEVFEIA-DRITVLRDGRVVGTRPTAAETSEDE 237



 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 50/235 (21%), Positives = 98/235 (41%), Gaps = 27/235 (11%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE++NL           +R ++  V   E++ I G  G+G++ L+  L G +    ++G
Sbjct: 263 VLEVRNLSGGGK------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSG 314

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIP------GIIMMQFLK--IALNEQRKAR 112
           +IL  G+ +   S  +    GI         +P      G+++   +   I L   R+  
Sbjct: 315 EILLDGKPVRIRSPRDAIKAGIAY-------VPEDRKSEGLVLDMSIAENITLASLRRFS 367

Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
               +          +    L I     ++P+    SGG ++   + +    +P + ILD
Sbjct: 368 RRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-TLSGGNQQKVVLARWLATDPKVLILD 426

Query: 173 ETDSGLDIDALKIAAQGVNALRSQDRSFLIIT-HYQRLLNYIKPDTIHVLHNGKI 226
           E   G+D+ A     + +  L ++ ++ L+I+     LL     D I V+  G+I
Sbjct: 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL--SDRILVMREGRI 479


>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 316

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 1   MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDY 55
           +LE+KNL          +  + G++ +++  E++ I+G +GSGKS L+  + G     + 
Sbjct: 1   LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60

Query: 56  EITAGDILYKGESILDWSIVERAS---KGIFLAFQY------PVEIPGIIMMQFLKIALN 106
            I  G+IL+ G+ +L  S  E      K I + FQ       PV   G  + + L++   
Sbjct: 61  RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120

Query: 107 EQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRL 163
              K   ++         +  ++   +GI     +R L       SGG ++   I     
Sbjct: 121 GLSKKEAKE---------RAIELLELVGI--PDPERRLKSYPHELSGGMRQRVMIAMALA 169

Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRS----QDRSFLIITHYQRLLNYIKPDTIH 219
           L P L I DE  + LD+    + AQ ++ L+     +  + ++ITH   ++  I  D + 
Sbjct: 170 LNPKLLIADEPTTALDV---TVQAQILDLLKELQREKGTALILITHDLGVVAEIA-DRVA 225

Query: 220 VLHNGKIIKTGD 231
           V++ G+I++ G 
Sbjct: 226 VMYAGRIVEEGP 237


>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 250

 Score = 90.2 bits (224), Expect = 5e-19
 Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 21/242 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE++ L  +        +  ++L+V P E+V ++GPNG+GK+TL  L++G   Y+ ++G
Sbjct: 4   LLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--YKPSSG 59

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            ++++G  I        A  GI   FQ     PG+ +++ + +  + +        L  P
Sbjct: 60  TVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSG--LLGRP 117

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLG---------FSGGEKKIAEILQMRLLEPSLCIL 171
              ++ R+         ++L+  + LG          S G+++  EI +    +P L +L
Sbjct: 118 RARKEEREARERA---RELLEF-VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173

Query: 172 DETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           DE  +GL+ +  +  A+ +  LR +   + L+I H  +L+  +  D I VL+ G++I  G
Sbjct: 174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLA-DRIVVLNYGEVIAEG 232

Query: 231 DY 232
             
Sbjct: 233 TP 234


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
           specific for the transport of dipeptides, oligopeptides
           (OppD), and nickel (NikDE).  The NikABCDE system of E.
           coli belongs to this family and is composed of the
           periplasmic binding protein NikA, two integral membrane
           components (NikB and NikC), and two ATPase (NikD and
           NikE).  The NikABCDE transporter is synthesized under
           anaerobic conditions to meet the increased demand for
           nickel resulting from hydrogenase synthesis.  The
           molecular mechanism of nickel uptake in many bacteria
           and most archaea is not known.  Many other members of
           this ABC family are also involved in the uptake of
           dipeptides and oligopeptides.  The oligopeptide
           transport system (Opp) is a five-component ABC transport
           composed of a membrane-anchored substrate binding
           proteins (SRP), OppA, two transmembrane proteins, OppB
           and OppC, and two ATP-binding domains, OppD and OppF..
          Length = 228

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%)

Query: 1   MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           +LE+KNL           + +  ++  ++  E + ++G +GSGKSTL+  + G    + T
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPT 58

Query: 59  AGDILYKGESILDWSIVERASKG--IFLAFQYPVEI--PGIIMMQFLKIALNEQRKARNE 114
           +G I++ G+ +L  S   R  +   I + FQ P+    P + + + +   L    K   +
Sbjct: 59  SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118

Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
           +          V  +   +G+  ++L R      SGG+++   I +   L P L I DE 
Sbjct: 119 EARK-----EAVLLLLVGVGLPEEVLNR-YPHELSGGQRQRVAIARALALNPKLLIADEP 172

Query: 175 DSGLDIDALKIAAQGVNALR----SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            S LD+    + AQ ++ L+        + L ITH   ++  I  D + V++ GKI++ G
Sbjct: 173 TSALDVS---VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIA-DRVAVMYAGKIVEEG 228


>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 235

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 25/238 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+E +NL  +        ++ ++L++E  E V ++GPNGSGKSTL  LL+G    + T+G
Sbjct: 3   MIEAENLSFR-YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSG 59

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK------IALNEQRKARNE 114
           ++L  G        +    + + L FQ P +       Q         +A   +      
Sbjct: 60  EVLVDGLDTSSEKSLLELRQKVGLVFQNPDD-------QLFGPTVEDEVAFGLENLGLPR 112

Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
           +E+       +V +    +G+   + + P NL  SGG+K+   I  +  + P + +LDE 
Sbjct: 113 EEI-----EERVAEALELVGLEELLDRPPFNL--SGGQKQRVAIAGVLAMGPEILLLDEP 165

Query: 175 DSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            +GLD    +   + +  L+ +  ++ +I+TH   L+     D + VL +GKI+  GD
Sbjct: 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA-DRVVVLDDGKILADGD 222


>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
           [Carbohydrate transport and metabolism].
          Length = 338

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 20/233 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            LE+KN+R        E+++ +NL +E  E V ++GP+G GKSTL  +++G    E T+G
Sbjct: 3   ELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +IL  G  + D    +R   GI + FQ     P + + + +   L  +   + E +    
Sbjct: 59  EILIDGRDVTDLPPEKR---GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID---- 111

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
              ++V+++   LG+   + ++PL L  SGG+++   + +  + +P + +LDE  S LD 
Sbjct: 112 ---KRVKEVAKLLGLEHLLNRKPLQL--SGGQRQRVALARALVRKPKVFLLDEPLSNLD- 165

Query: 181 DALK--IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
             L+  + ++          + + +TH Q     +  D I V+++G+I + G 
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGT 217


>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
           Transporters-like subgroup.  This family is comprised of
           proteins involved in the transport of apparently
           unrelated solutes and proteins specific for di- and
           oligosaccharides and polyols.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.   ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 213

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 18/230 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+K L +K        +  L+L VEP E +A++GP+G GK+TL  L++G +     +G+
Sbjct: 1   LELKGL-SKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE--RPDSGE 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G  +       R    I + FQ     P + + + +   L  +   + E       
Sbjct: 57  ILIDGRDVTGVPPERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR----- 108

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              +VR++   +G+   + + P  L  SGG+++   + +    EPSL +LDE  S LD  
Sbjct: 109 --ARVRELLELVGLEGLLNRYPHEL--SGGQQQRVALARALAREPSLLLLDEPLSALDAK 164

Query: 182 -ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
              ++  +     R    + + +TH Q     +  D I V++ G+I++ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213


>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 716

 Score = 86.5 bits (214), Expect = 6e-18
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  +++ L+  + P EVVA++GP+GSGKST++ LL   + Y+ T+G IL  G  I D + 
Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL--LRFYDPTSGRILLDGVPISDINH 537

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALN-EQRKARNEKEL-----LIPDFTRKVRK 128
                K I L  Q PV   G I         N    +     ++      I +F      
Sbjct: 538 KYLRRK-IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNT 596

Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
           +  E G  +           SGG+K+   I +  L  P + ILDE  S LD ++  +  +
Sbjct: 597 VVGEKGSQL-----------SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645

Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
            ++ L  Q R+ L+I H  RL      D I V+  G++++ G +   L      YA+L++
Sbjct: 646 ALDRLM-QGRTVLVIAH--RLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702

Query: 249 E 249
            
Sbjct: 703 R 703


>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
           an N-terminal double-glycine peptidase domain [Defense
           mechanisms].
          Length = 709

 Score = 86.4 bits (214), Expect = 6e-18
 Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 13/243 (5%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+  +    D  ++  L+L++ P E VAI+G +GSGKSTL  LL G   Y+   G 
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--YKPQQGR 529

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G  + D   +    + +    Q P    G I      IAL        ++E++   
Sbjct: 530 ILLDGVDLNDID-LASLRRQVGYVLQDPFLFSGSI---RENIALGNP--EATDEEIIEAA 583

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
                 +    L +  D          SGG+++   + +  L +P + +LDE  S LD +
Sbjct: 584 QLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
              I  Q +  +  Q R+ +II H  RL      D I VL  GKI++ G  S    L + 
Sbjct: 644 TEAIILQNLLQIL-QGRTVIIIAH--RLSTIRSADRIIVLDQGKIVEQG--SHEELLAQG 698

Query: 242 GYA 244
           G  
Sbjct: 699 GLY 701


>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
           protein.  In A. tumefaciens cyclic beta-1, 2-glucan must
           be transported into the periplasmic space to exert its
           action as a virluence factor.  This subfamily belongs to
           the MRP-like family and is involved in drug, peptide,
           and lipid export.  The MRP-like family, similar to all
           ABC proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains each
           composed of six transmembrane (TM) helices and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 229

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
           D    +++ +N  ++P E VAI+GP G+GK+TL  LL     Y+   G IL  G  I D 
Sbjct: 13  DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDI 70

Query: 73  SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           S  +     I +  Q      G IM  ++  +    ++      KE    DF  K+    
Sbjct: 71  SR-KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPN-- 127

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
              G +  + +   NL  S GE+++  I +  L +P + ILDE  S +D +  K+  + +
Sbjct: 128 ---GYDTVLGENGGNL--SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             L  + R+ +II H  RL      D I VL +GKII+ G
Sbjct: 183 EKLM-KGRTSIIIAH--RLSTIKNADKILVLDDGKIIEEG 219


>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 226

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 20/233 (8%)

Query: 1   MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           M+E+KN+           E ++ +NL++E  E VAI+GP+GSGKSTL  LL G    + T
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPT 58

Query: 59  AGDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
           +G++L  G+ +   S  E A    K I   FQ    +P + +++ +++ L    K+   +
Sbjct: 59  SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118

Query: 116 ELLIPDFTRKVRKITAELGINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
           +       R   ++   LG+   +L K+P  L  SGG+++   I +  +  P + + DE 
Sbjct: 119 K-------RAAEELLEVLGLEDRLLKKKPSEL--SGGQQQRVAIARALINNPKIILADEP 169

Query: 175 DSGLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
              LD    K   + +  L + + ++ +++TH   L  Y   D +  L +GKI
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELKDGKI 220


>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components [Inorganic ion transport and
           metabolism / Coenzyme metabolism].
          Length = 258

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE++NL          I+  L+  +   E+  I+GPNGSGKSTL   L+G    +  +G
Sbjct: 2   MLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL--KPKSG 57

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           ++L  G+ I   S  E A K  ++  Q P    G+ + + + +        R     L  
Sbjct: 58  EVLLDGKDIASLSPKELAKKLAYVP-QSPSAPFGLTVYELVLL-------GRYPHLGLFG 109

Query: 121 DFTRKVRKITAELGINMDMLK---RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
             +++  +I  E    + +     RP++   SGGE++   I +    E  + +LDE  S 
Sbjct: 110 RPSKEDEEIVEEALELLGLEHLADRPVDEL-SGGERQRVLIARALAQETPILLLDEPTSH 168

Query: 178 LDIDALKIAAQGVNAL-RSQDRSFLIITHYQRL-LNYIKPDTIHVLHNGKIIKTGD 231
           LDI       + +  L R +  + +++ H   L   Y   D + +L +GKI+  G 
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY--ADHLILLKDGKIVAQGT 222


>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
           mitochondrial ATP-binding cassette protein involved in
           iron homeostasis and one of four ABC transporters
           expressed in the mitochondrial inner membrane, the other
           three being MDL1(ABC7), MDL2, and ATM1.  In fact, the
           yeast MDL1 (multidrug resistance-like protein 1) and
           MDL2 (multidrug resistance-like protein 2) transporters
           are also included in this CD.  MDL1 is an ATP-dependent
           permease that acts as a high-copy suppressor of ATM1 and
           is thought to have a role in resistance to oxidative
           stress. Interestingly, subfamily B is more closely
           related to the carboxyl-terminal component of subfamily
           C than the two halves of ABCC molecules are with one
           another..
          Length = 238

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 20/239 (8%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  I++GL+L + P + VA++G +G GKST+  LL   + Y+ T+G+IL  G  I D ++
Sbjct: 15  DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNL 72

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---KELLIPDFTRKV-RKIT 130
               S+ I L  Q PV   G I  + ++    +      E   K+  I DF   +     
Sbjct: 73  RWLRSQ-IGLVSQEPVLFDGTIA-ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
             +G     L        SGG+K+   I +  L  P + +LDE  S LD ++ K+  + +
Sbjct: 131 TLVGERGSQL--------SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
           +    + R+ ++I H  RL      D I VL NG++++ G +   L  ++  YA+L+K 
Sbjct: 183 DRAM-KGRTTIVIAH--RLSTIRNADLIAVLQNGQVVEQGTHD-ELMAQKGVYAKLVKA 237


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
           ATP-binding cassette, macrolide-specific ABC-type efflux
           carrier (MacAB), and proteins involved in cell division
           (FtsE), and release of liporoteins from the cytoplasmic
           membrane (LolCDE).  They are clustered together
           phylogenetically.  MacAB is an exporter that confers
           resistance to macrolides, while the LolCDE system is not
           a transporter at all.  An FtsE null mutants showed
           filamentous growth and appeared viable on high salt
           medium only, indicating a role for FtsE in cell division
           and/or salt transport.  The LolCDE complex catalyses the
           release of lipoproteins from the cytoplasmic membrane
           prior to their targeting to the outer membrane..
          Length = 218

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 19/231 (8%)

Query: 2   LEIKNLRA--KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59
           +E+KNL           + ++G++L +E  E VAI+GP+GSGKSTL  +L G      T+
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TS 58

Query: 60  GDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
           G++   G  I   S  E A+   + I   FQ    +P +  ++ +++ L      + E+ 
Sbjct: 59  GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118

Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
                   +  ++   +G+   +   P  L  SGG+++   I +    +P + + DE   
Sbjct: 119 -------ERAEELLERVGLGDRLNHYPSEL--SGGQQQRVAIARALANDPKIILADEPTG 169

Query: 177 GLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
            LD +  K   + +  L +    + +++TH   L  Y   D I  L +GKI
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYA--DRIIELRDGKI 218


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
           transporters are involved in drug, peptide, and lipid
           export.  They belong to the subfamily C of the
           ATP-binding cassette (ABC) superfamily of transport
           proteins.  The ABCC subfamily contains transporters with
           a diverse functional spectrum that includes ion
           transport, cell surface receptor, and toxin secretion
           activities.  The MRP-like family, simlar to all ABC
           proteins, have a common four-domain core structure
           constituted by two membrane-spanning domains, each
           composed of six transmembrane (TM) helices, and two
           nucleotide-binding domains (NBD).  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 171

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 53/224 (23%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E KN+          +++ ++L ++P E VAI+GP+GSGKSTL  LL     Y+ T+G+
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGE 58

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G  + D  +       I    Q P          FL                    
Sbjct: 59  ILIDGVDLRDLDLESLRKN-IAYVPQDP----------FL-------------------- 87

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
           F+  +R+                N+  SGG+++   I +  L +P + ILDE  S LD +
Sbjct: 88  FSGTIRE----------------NI-LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
              +  + + AL  + ++ ++I H  RL      D I VL +G+
Sbjct: 131 TEALILEALRALA-KGKTVIVIAH--RLSTIRDADRIIVLDDGR 171


>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
           family are similar to members of the Mj1267_LivG family,
           which is involved in the transport of branched-chain
           amino acids.  The genes yhbG and yhbN are located in a
           single operon and may function together in cell envelope
           during biogenesis.  YhbG is the putative ATP-binding
           cassette component and YhbN is the putative
           periplasmic-binding protein.  Depletion of each gene
           product leads to growth arrest, irreversible cell damage
           and loss of viability in E. coli.  The YhbG homolog
           (NtrA) is essential in Rhizobium meliloti, a symbiotic
           nitrogen-fixing bacterium..
          Length = 232

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 14/230 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L  +NL  +      +++ G++L V+  E+V ++GPNG+GK+T  Y++ G    +  +G 
Sbjct: 1   LRAENLSKRY--GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGK 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G+ I    + +RA  GI    Q       + + + +   L  +  ++ E+E     
Sbjct: 57  ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE----- 111

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              K+ ++  E  I    L++      SGGE++  EI +     P   +LDE  +G+D  
Sbjct: 112 --EKLEELLEEFHI--THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           A++   + +  L+ +    LI  H  R    I  D  ++++ GK++  G 
Sbjct: 168 AVQDIQKIIKILKDRGIGVLITDHNVRETLSIT-DRAYIIYEGKVLAEGT 216


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 240

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 19/234 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+EIKNL       D E+++G++L VE  EVV I+GP+GSGKSTL   L+G +  E  +G
Sbjct: 2   MIEIKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSG 57

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            I   GE + D   + +  + + + FQ     P + +++ + +A  + +K    +     
Sbjct: 58  SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA---- 113

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSG 177
               K  ++  ++G+       P  L  SGG+++   IA  L M   +P + + DE  S 
Sbjct: 114 --REKALELLEKVGLADKADAYPAQL--SGGQQQRVAIARALAM---DPKVMLFDEPTSA 166

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           LD + +      +  L  +  + +I+TH       +  D +  +  GKII+ G 
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA-DRVIFMDQGKIIEEGP 219


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
           system, ATPase component [Amino acid transport and
           metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 32/242 (13%)

Query: 1   MLEIKNLRAKIVD--TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           +L ++NL             +  ++L++E  E + I+G +GSGKSTL+ LL+G +    +
Sbjct: 3   LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--S 60

Query: 59  AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---- 114
           +G IL  G+ +      +   + + + FQ P              +LN +R         
Sbjct: 61  SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS------------SLNPRRTVGRILSEP 108

Query: 115 -KELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
            +   +    +++ ++  ++G+    L R P  L  SGG+++   I +  + EP L ILD
Sbjct: 109 LRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHEL--SGGQRQRIAIARALIPEPKLLILD 166

Query: 173 ETDSGLDIDALKIAAQGVNAL----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
           E  S LD+    + AQ +N L    + +  ++L I+H   L+ ++  D I V+ NG+I++
Sbjct: 167 EPTSALDV---SVQAQILNLLLELKKERGLTYLFISHDLALVEHMC-DRIAVMDNGQIVE 222

Query: 229 TG 230
            G
Sbjct: 223 IG 224


>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 352

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 17/231 (7%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            LEI+N+       D   +  ++L ++  E V ++GP+G GK+TL  +++G    + ++G
Sbjct: 5   ALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSG 60

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +IL  GE I D    +R    I + FQ     P + + + +   L  ++K +        
Sbjct: 61  EILLDGEDITDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA------ 111

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           +   +V +    +G+     ++P  L  SGG+++   + +  + EP + +LDE  S LD 
Sbjct: 112 EIKARVEEALELVGLEGFADRKPHQL--SGGQQQRVALARALVPEPKVLLLDEPLSALDA 169

Query: 181 DALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
              +   + +  L R    +F+ +TH Q     +  D I V+++G+I + G
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMS-DRIAVMNDGRIEQVG 219


>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
           LIV-I bacterial ABC-type two-component transport system
           that imports neutral, branched-chain amino acids.  The
           E. coli branched-chain amino acid transporter comprises
           a heterodimer of ABC transporters (LivF and LivG), a
           heterodimer of six-helix TM domains (LivM and LivH), and
           one of two alternative soluble periplasmic substrate
           binding proteins (LivK or LivJ).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules..
          Length = 222

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 15/230 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE++NL A      ++I+ G++L V   E+VA++G NG+GK+TL   + G       +G 
Sbjct: 1   LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGS 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I + G  I      ERA  GI    +     P + + + L +    +R+A+ +  L    
Sbjct: 57  IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---- 112

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
                 ++        +  K+      SGGE+++  I +  +  P L +LDE   GL   
Sbjct: 113 -----ERVYELFPRLKERRKQLAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            ++   + +  LR +  + L++    R    I  D  +VL  G+++  G 
Sbjct: 167 IVEEIFEAIRELRDEGVTILLVEQNARFALEIA-DRAYVLERGRVVLEGT 215


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 19/212 (8%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
           TEI+  L+L +   E++A+ G NG+GK+TL+ +L+G    + ++G IL  G+ I      
Sbjct: 13  TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKAK--- 67

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
               K I    Q           Q    ++ E+     +    +     +   +  +L +
Sbjct: 68  -ERRKSIGYVMQDVDY-------QLFTDSVREELLLGLK---ELDAGNEQAETVLKDLDL 116

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195
                + PL+L  SGG+K+   I    L    L I DE  SGLD   ++   + +  L +
Sbjct: 117 YALKERHPLSL--SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174

Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227
           Q ++ ++ITH    L  +  D + +L NG I+
Sbjct: 175 QGKAVIVITHDYEFLAKVC-DRVLLLANGAIV 205


>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
           ATPase components [General function prediction only].
          Length = 501

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 13/214 (6%)

Query: 20  RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS 79
             ++L V+  E+ A++G NG+GKSTL  +L G   Y+  +G+I   G+ +   S  +   
Sbjct: 21  DDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--YQPDSGEIRVDGKEVRIKSPRDAIR 78

Query: 80  KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDM 139
            GI +  Q+ + +P + + + + +   E  K      +       ++++++   G+ +D 
Sbjct: 79  LGIGMVHQHFMLVPTLTVAENIILG-LEPSKGGL---IDRRQARARIKELSERYGLPVDP 134

Query: 140 LKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
             +  +L  S GE++  EIL+       L ILDE  + L         + +  L ++ ++
Sbjct: 135 DAKVADL--SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKT 192

Query: 200 FLIITHYQRLLNYIK--PDTIHVLHNGKIIKTGD 231
            + ITH    L  +    D + VL  GK++ T D
Sbjct: 193 IIFITHK---LKEVMAIADRVTVLRRGKVVGTVD 223



 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 27/243 (11%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+++L  K        ++ ++ +V   E+V I G  G+G+S L   +SG +  +  +G 
Sbjct: 258 LEVEDLSVKD-RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR--KPASGR 314

Query: 62  ILYKGESIL-DWSIVERASKGIFLAFQYPVEIP------GIIMMQFL--KIALNEQRKAR 112
           IL  G+ +L   S  ER   G+         +P      G+++   L   + L    K  
Sbjct: 315 ILLNGKDVLGRLSPRERRRLGLAY-------VPEDRHGHGLVLDLSLAENLVLGRHDKKP 367

Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLC 169
             +   +    R +RK   EL    D+     +      SGG ++   + +     P L 
Sbjct: 368 FSRGGFLD--RRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLL 425

Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLII-THYQRLLNYIKPDTIHVLHNGKIIK 228
           I  +   GLD+ A++   + +  LR   ++ L+I      +L     D I V++ G+I+ 
Sbjct: 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILE--LSDRIAVIYEGRIVG 483

Query: 229 TGD 231
              
Sbjct: 484 IVP 486


>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
           exporters. Many non-lantibiotic bacteriocins of lactic
           acid bacteria are produced as precursors which have
           N-terminal leader peptides that share similarities in
           amino acid sequence and contain a conserved processing
           site of two glycine residues in positions -1 and -2.  A
           dedicated ATP-binding cassette (ABC) transporter is
           responsible for the proteolytic cleavage of the leader
           peptides and subsequent translocation of the
           bacteriocins across the cytoplasmic membrane..
          Length = 220

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+     + +   +  ++L +   E VAI+G  GSGKSTL  LL+G   Y+ T+G 
Sbjct: 3   IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGS 60

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLI 119
           +L  G  I      +   + I    Q      G +   +       +++R  R  +   +
Sbjct: 61  VLLDGTDIRQLDPADL-RRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
            DF  K        G+++ + +R   L  SGG+++   + +  L +P + +LDE  S +D
Sbjct: 120 TDFVNKHPN-----GLDLQIGERGRGL--SGGQRQAVALARALLNDPPILLLDEPTSAMD 172

Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +++ +   + +  L   D++ +IITH   LL+ +  D I V+ +G+I+  G
Sbjct: 173 MNSEERLKERLRQLLG-DKTLIIITHRPSLLDLV--DRIIVMDSGRIVADG 220


>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
           (EP) precursor transport, regulation of
           lipid-trafficking mechanisms, and pleiotropic drug
           resistance (DR).  DR is a well-described phenomenon
           occurring in fungi and shares several similarities with
           processes in bacteria and higher eukaryotes.  Compared
           to other members of the ABC transporter subfamilies, the
           ABCG transporter family is composed of proteins that
           have an ATP-binding cassette domain at the N-terminus
           and a TM (transmembrane) domain at the C-terminus..
          Length = 194

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 48/229 (20%)

Query: 5   KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY 64
             +++    +  ++++ ++ K +P E+ AIMGP+G+GKSTL   L+G +     +G++L 
Sbjct: 11  VTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70

Query: 65  KGESILDWSIVERASKGIFLAFQYPVEIPGII--MMQFLKIALNEQRKARNEKELLIPDF 122
            G  +                         II  + Q                ++L P  
Sbjct: 71  NGRPL------------------DKRSFRKIIGYVPQ---------------DDILHPTL 97

Query: 123 T-RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
           T R+     A+L             G SGGE+K   I    +  PSL  LDE  SGLD  
Sbjct: 98  TVRETLMFAAKLR------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +       +  L    R+ +   H      +   D + +L  G++I  G
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194


>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
           biosynthesis, fused ATPase and permease components
           [Energy production and conversion / Posttranslational
           modification, protein turnover, chaperones].
          Length = 573

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 39/255 (15%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE++N+        T+ ++  NL +   E VAI+G +GSGKSTL  LL+G   ++   G 
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGS 394

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   G  I          + +        +   +                R+   L  PD
Sbjct: 395 ITLNGVEIASLD-----EQALRETISVLTQRVHLF-----------SGTLRDNLRLANPD 438

Query: 122 FT-RKVRKITAELGINMDMLKRPLNL---------GFSGGEKKIAEILQMRLLEPSLCIL 171
            +  ++     ++G+   +   P  L           SGGE++   + +  L +  L +L
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498

Query: 172 DETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
           DE   GLD     I  + V AL    ++ ++ L++TH  RL    + D I VL NGKII+
Sbjct: 499 DEPTEGLD----PITERQVLALLFEHAEGKTLLMVTH--RLRGLERMDRIIVLDNGKIIE 552

Query: 229 TGDYSIALDLEENGY 243
            G +  A  L  NG 
Sbjct: 553 EGTH--AELLANNGR 565


>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
           fundamental importance in the cell physiology of
           bacteria because phosphate is required as a nutrient.
           The Pst system of E. coli comprises four distinct
           subunits encoded by the pstS, pstA, pstB, and pstC
           genes.  The PstS protein is a phosphate-binding protein
           located in the periplasmic space. P stA and PstC are
           hydrophobic and they form the transmembrane portion of
           the Pst system.  PstB is the catalytic subunit, which
           couples the energy of ATP hydrolysis to the import of
           phosphate across cellular membranes through the Pst
           system, often referred as ABC-protein.  PstB belongs to
           one of the largest superfamilies of proteins
           characterized by a highly conserved adenosine
           triphosphate (ATP) binding cassette (ABC), which is also
           a nucleotide binding domain (NBD)..
          Length = 227

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 35/244 (14%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEIT 58
           +E+++L   +   D   ++ ++L +   E+ A++GP+G GKSTL  LL+   D       
Sbjct: 1   IELRDLN--VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58

Query: 59  AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIM------MQFLKIALNEQRKA 111
            G++L  G+ I D  + V    + + + FQ P   PG I       ++   I L E+   
Sbjct: 59  EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118

Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
           R E+ L       +V               R   LG SGG+++   + +    EP + +L
Sbjct: 119 RVEEALRKAALWDEV-------------KDRLHALGLSGGQQQRLCLARALANEPEVLLL 165

Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKII 227
           DE  S LD  +     + +  L+ ++ + +I+TH      R+      D    L NG+++
Sbjct: 166 DEPTSALDPISTAKIEELIAELK-KEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLV 219

Query: 228 KTGD 231
           + G 
Sbjct: 220 EFGP 223


>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
           related to eukaryotic MDR proteins.  ABC transporters
           are a large family of proteins involved in the transport
           of a wide variety of different compounds, like sugars,
           ions, peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 234

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 17/241 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E KN+  +       ++R ++L +   E VA++GP+GSGKSTL  L+   + Y++ +G 
Sbjct: 1   VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGR 58

Query: 62  ILYKGESILDWSIVE-RASKGIFL--AFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
           IL  G  + D+++   R   G+     F +   +   I          E  +A       
Sbjct: 59  ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
             +F  ++       G +  + +R + L  SGG+++   I +  L +P + ILDE  S L
Sbjct: 119 --EFIMEL-----PEGYDTVIGERGVKL--SGGQRQRIAIARALLKDPPILILDEATSAL 169

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDL 238
           D ++ ++    +  L  ++R+  +I H  RL      D I VL +GKI++ G +   L  
Sbjct: 170 DTESERLVQAALERL-MKNRTTFVIAH--RLSTIENADRIVVLEDGKIVERGTHEELLAQ 226

Query: 239 E 239
            
Sbjct: 227 G 227


>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 254

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 23/245 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITA 59
           M+E++NL       +  ++  ++L VE  E+ A++GPNG+GKSTL   + G  K      
Sbjct: 4   MIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS--- 58

Query: 60  GDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
           G+I   G+ +       R     +   +   +P+ +  ++++         +R  + +KE
Sbjct: 59  GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118

Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
                   KV +    +G+  D+  R +    SGG+K+   + +     P L +LDE  +
Sbjct: 119 --------KVDEALERVGM-EDLRDRQIG-ELSGGQKQRVLLARALAQNPDLLLLDEPFT 168

Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH-NGKIIKTGDYSIA 235
           G+D+   K     +  LR + ++ L++TH    L  +      V+  N  +I +G     
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHD---LGLVMAYFDRVICLNRHLIASGPPEEV 225

Query: 236 LDLEE 240
           L  E 
Sbjct: 226 LTEEN 230


>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
           belongs to a multisubunit transporter involved in drug
           resistance (BcrA and DrrA), nodulation, lipid transport,
           and lantibiotic immunity.  In bacteria and archaea,
           these transporters usually include an ATP-binding
           protein and one or two integral membrane proteins.
           Eukaryote systems of the ABCA subfamily display ABC
           domains that are quite similar to this family.  The
           ATP-binding domain shows the highest similarity between
           all members of the ABC transporter family.  ABC
           transporters are a subset of nucleotide hydrolases that
           contain a signature motif, Q-loop, and H-loop/switch
           region, in addition to, the Walker A motif/P-loop and
           Walker B motif commonly found in a number of ATP- and
           GTP-binding and hydrolyzing proteins..
          Length = 173

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 52/225 (23%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++NL  +        +  ++L VE  E+  ++GPNG+GK+TL  ++ G    +  +G+
Sbjct: 1   IEVRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDSGE 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   G+ I      E   + I    + P     + + + LK                   
Sbjct: 57  IKVLGKDI--KKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------- 95

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
                                      SGG K+   + Q  L +P L ILDE  SGLD +
Sbjct: 96  --------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           + +   + +  L+ + ++ L+ +H       +  D + +L+NG+I
Sbjct: 130 SRREFWELLRELKKEGKTILLSSHILEEAERLC-DRVAILNNGRI 173


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
           expressed in the mitochondria.  Although the specific
           function of ATM1 is unknown, its disruption results in
           the accumulation of excess mitochondrial iron, loss of
           mitochondrial cytochromes, oxidative damage to
           mitochondrial DNA, and decreased levels of cytosolic
           heme proteins.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 236

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 16/239 (6%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
           D    +++ ++  +   + VAI+GP+GSGKST+  LL   + Y++++G IL  G+ I + 
Sbjct: 11  DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFYDVSSGSILIDGQDIREV 68

Query: 73  SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           ++ +   + I +  Q  V     I   +++ +    ++      K   I D   +     
Sbjct: 69  TL-DSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD-- 125

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
              G +  + +R L L  SGGEK+   I +  L  P + +LDE  S LD    +     +
Sbjct: 126 ---GYDTIVGERGLKL--SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
             + S+ R+ ++I H  RL   +  D I VL +G+I++ G +   L  +   YAE+ K 
Sbjct: 181 RDV-SKGRTTIVIAH--RLSTIVNADKIIVLKDGRIVERGTHE-ELLAKGGLYAEMWKA 235


>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
           component [General function prediction only].
          Length = 243

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 14/232 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            L  +NL         +++  ++L+V   E+V ++GPNG+GK+T  Y++ G       +G
Sbjct: 4   TLVAENLAKSY--KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSG 59

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            IL   E I    + +RA  GI    Q       + +   +   L  + K   + E    
Sbjct: 60  KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER--- 116

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
               ++  +  E  I    L+       SGGE++  EI +     P   +LDE  +G+D 
Sbjct: 117 --KEELDALLEEFHIT--HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQR-LLNYIKPDTIHVLHNGKIIKTGD 231
            A+    + +  L+ +    LI  H  R  L+    D  +++ +GK++  G 
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDIC--DRAYIISDGKVLAEGS 222


>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
           of a variety of lipid compounds.  Mutations of members
           of ABCA subfamily are associated with human genetic
           diseases, such as, familial high-density lipoprotein
           (HDL) deficiency, neonatal surfactant deficiency,
           degenerative retinopathies, and congenital
           keratinization disorders.  The ABCA1 protein is involved
           in disorders of cholesterol transport and high-density
           lipoprotein (HDL) biosynthesis.  The ABCA4 (ABCR)
           protein transports vitamin A derivatives in the outer
           segments of photoreceptor cells, and therefore, performs
           a crucial step in the visual cycle.  The ABCA genes are
           not present in yeast.  However, evolutionary studies of
           ABCA genes indicate that they arose as transporters that
           subsequently duplicated and that certain sets of ABCA
           genes were lost in different eukaryotic lineages..
          Length = 220

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 15/229 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L+I+NL           +  L+L V   E+  ++G NG+GK+T   +L+G  +   T+G 
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPTSGT 58

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
               G SI   +  + A + +    Q+      + + + L+     +   ++E +  +  
Sbjct: 59  AYINGYSIR--TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
             R        LG+     KR   L  SGG K+   +    +  PS+ +LDE  SGLD  
Sbjct: 117 LLRV-------LGLTDKANKRARTL--SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           + +     +  +R + RS ++ TH       +  D I ++ +GK+   G
Sbjct: 168 SRRAIWDLILEVR-KGRSIILTTHSMDEAEALC-DRIAIMSDGKLRCIG 214


>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
           transporter, MalK.  ATP binding cassette (ABC) proteins
           function from bacteria to human, mediating the
           translocation of substances into and out of cells or
           organelles.  ABC transporters contain two
           transmembrane-spanning domains (TMDs) or subunits and
           two nucleotide binding domains (NBDs) or subunits that
           couple transport to the hydrolysis of ATP.  In the
           maltose transport system, the periplasmic maltose
           binding protein (MBP) stimulates the ATPase activity of
           the membrane-associated transporter, which consists of
           two transmembrane subunits, MalF and MalG, and two
           copies of the ATP binding subunit, MalK, and becomes
           tightly bound to the transporter in the catalytic
           transition state, ensuring that maltose is passed to the
           transporter as ATP is hydrolyzed..
          Length = 213

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 24/221 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           +   +  LNL +   E V ++GP+G GK+T   +++G    E T+G I   G  + D   
Sbjct: 12  NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPP 69

Query: 75  VERASKGIFLAFQ----YPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
            +R    I + FQ    YP       M  +  IA   + +   + E+       +VR++ 
Sbjct: 70  KDR---DIAMVFQNYALYPH------MTVYDNIAFGLKLRKVPKDEI-----DERVREVA 115

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA-LKIAAQG 189
             L I   + ++P  L  SGG+++   + +  + EP + ++DE  S LD    +++ A+ 
Sbjct: 116 ELLQIEHLLDRKPKQL--SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
               +    + + +TH Q     +  D I V+++G+I + G
Sbjct: 174 KRLQQRLGTTTIYVTHDQVEAMTMA-DRIAVMNDGQIQQIG 213


>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component [Inorganic ion transport and
           metabolism].
          Length = 248

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LEI+ +         E++  +NL VE  E VAI+GP+G GKSTL  L++G +    T+G
Sbjct: 3   LLEIEGVS--KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           ++L  G        V      I   FQ    +P + ++  + + L  + K++ E      
Sbjct: 59  EVLLDGR------PVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEAR---- 108

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD- 179
               + +++   +G+     K P  L  SGG ++   I +     P L +LDE    LD 
Sbjct: 109 ---ERAKELLELVGLAGFEDKYPHQL--SGGMRQRVAIARALATRPKLLLLDEPFGALDA 163

Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL--- 236
           +   ++  + +       ++ L++TH      Y+  D + VL N       +  I L   
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-DRVVVLSNRPGRIGEELEIDLPRP 222

Query: 237 -DLEENGYAELIKE 249
               +  + EL +E
Sbjct: 223 RIRGDPEFLELREE 236


>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
           ATPase domains [General function prediction only].
          Length = 530

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 51/252 (20%), Positives = 110/252 (43%), Gaps = 23/252 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+ ++NL       D  ++  ++L + P E + ++G NG+GKSTL  +L+G  + E  +G
Sbjct: 3   MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG--ELEPDSG 58

Query: 61  DI-LYKGESI----------LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR 109
           ++   KG  +           + ++++   +G     +   E+     +           
Sbjct: 59  EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118

Query: 110 KARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLC 169
                +EL       +  +    LG       RP++   SGG ++   + +  L EP L 
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGF--PDEDRPVS-SLSGGWRRRVALARALLEEPDLL 175

Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK- 228
           +LDE  + LD+++++      + L+    + ++++H +  L+ +    +  L  GK+   
Sbjct: 176 LLDEPTNHLDLESIEWLE---DYLKRYPGTVIVVSHDRYFLDNVATHILE-LDRGKLTPY 231

Query: 229 TGDYSIALDLEE 240
            G+YS  L+ + 
Sbjct: 232 KGNYSSYLEQKA 243



 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 32/241 (13%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE +N+     D    +++ L+ +++  + +AI+GPNG+GKSTL  LL+G  +    +G
Sbjct: 321 VLEFENVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSG 377

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            +              +  + + + +            Q       ++       E    
Sbjct: 378 TV--------------KVGETVKIGY----------FDQHRDELDPDKTVLEELSEGFPD 413

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
              ++VR      G   +  ++P+    SGGEK    + ++ L  P+L +LDE  + LDI
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVG-VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
           ++L+       AL   + + L+++H +  L+ +      ++ +      G Y   L+ ++
Sbjct: 473 ESLEALE---EALLDFEGTVLLVSHDRYFLDRVATRIW-LVEDKVEEFEGGYEDYLEQKK 528

Query: 241 N 241
            
Sbjct: 529 E 529


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 21/239 (8%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
           D    ++  ++  V+P + VA++GP+G+GKST+  LL   + +++ +G I   G+ I   
Sbjct: 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL--FRFFDVNSGSITIDGQDI--- 602

Query: 73  SIVERAS--KGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
             V ++S    I +  Q  V     I+  +++ K + + +      K   I D      +
Sbjct: 603 RNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHD------R 656

Query: 129 ITA-ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
           I     G N  + +R L L  SGGEK+   I +  L  PS+ +LDE  S LD +  + A 
Sbjct: 657 ILQFPEGYNTRVGERGLKL--SGGEKQRVAIARTILKAPSIILLDEATSALDTNTER-AI 713

Query: 188 QGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246
           Q   A    +R+ +++ H  RL   +  D I V+ NG+I++ G +   L  +   YA++
Sbjct: 714 QAALARLCANRTTIVVAH--RLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
           transport system involved in resistant to organic
           solvents; ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 14/219 (6%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
              +++G++L V   E++AI+GP+GSGKSTL  L+ G       +G++L  GE I   S 
Sbjct: 12  GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSE 69

Query: 75  VE--RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
            E  R  + + + FQ       + + + +   L E  +  +E+E+        V +    
Sbjct: 70  AELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR-LSEEEI-----REIVLEKLEA 123

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191
           +G+       P  L  SGG KK   + +   L+P L + DE  +GLD I +  I     +
Sbjct: 124 VGLRGAEDLYPAEL--SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181

Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             +    + +++TH       I  D I VL++GKI+  G
Sbjct: 182 LKKELGLTSIMVTHDLDTAFAI-ADRIAVLYDGKIVAEG 219


>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
           cancer resistance protein) [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 613

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
            I++G++   +P E++AIMGP+GSGK+TL   L+G        G +   GE +L+    +
Sbjct: 44  TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAG-----RLNGGLKLSGEILLNGRPRD 98

Query: 77  RASKGIFLAF--QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
             S      +  Q  V +P + + + L+ +       R    L   +   +V ++ +ELG
Sbjct: 99  SRSFRKISGYVQQDDVLLPTLTVRETLRFSA----LLRLPSSLSKEEKRERVEEVISELG 154

Query: 135 INM---DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
           +      ++  P   G SGGE+K   I    L +PS+  LDE  SGLD      A Q V 
Sbjct: 155 LEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS---FSALQVVQ 211

Query: 192 ALR--SQDRSFLIITHYQ---RLLNYIKPDTIHVLHNGKIIKTGDYSIALD-LEENGY 243
            L+  ++    +I T +Q    L      D + +L  G+++ +G     L+     G+
Sbjct: 212 LLKRLARSGRTVICTIHQPSSELFELF--DKLLLLSEGEVVYSGSPRELLEFFSSLGF 267


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+  +NL   +      ++ G++L + P EV+AI+GPNG+GKSTL   LSG  +    +G
Sbjct: 1   MIRAENLSYSL--AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG--ELSPDSG 56

Query: 61  DILYKGESILDWSIVERASK-GIF-----LAFQYPVEIPGIIMMQFLKIALNEQRKARNE 114
           ++   G  +  W   E A    +      LAF + V+     ++Q  +I     R+   +
Sbjct: 57  EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ----EVVQMGRIPHRSGREPEED 112

Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEIL-QMR--LLEPSL 168
           + +          +  A   +    L        SGGE++   +A +L Q+   +     
Sbjct: 113 ERI--------AAQALAATDL--SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRW 162

Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
             LDE  S LDI       +    L  +  + L + H   L      D I +LH G++I 
Sbjct: 163 LFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA-DRIVLLHQGRVIA 221

Query: 229 TG 230
           +G
Sbjct: 222 SG 223


>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
           ATP-binding subunits of the bacterial ABC-type nitrate
           and sulfonate transport systems, respectively.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 220

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 18/194 (9%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
                 +  ++L VE  E VA++GP+G GKSTL  +++G      T+G++L  GE +   
Sbjct: 14  GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPV--- 68

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
                        FQ    +P + ++  + + L  Q   + E          +  ++   
Sbjct: 69  ---TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-------ERAEELLEL 118

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191
           +G++      P  L  SGG ++   + +   ++P + +LDE  S LD +   ++  + ++
Sbjct: 119 VGLSGFENAYPHQL--SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176

Query: 192 ALRSQDRSFLIITH 205
             R   ++ L++TH
Sbjct: 177 IWRETGKTVLLVTH 190


>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
           permease components [Defense mechanisms].
          Length = 567

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 17/250 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+          +++ ++  +EP E VAI+GP+GSGKSTL  LL     Y+ T+G+
Sbjct: 329 IEFENVSFSY-PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL--YDPTSGE 385

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLI 119
           IL  G  I D S+     + I +  Q P+   G I   +   +    ++      K    
Sbjct: 386 ILIDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANA 444

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
            +F   +       G +  + +R +NL  SGG+++   I +  L  P + ILDE  S LD
Sbjct: 445 HEFIANL-----PDGYDTIVGERGVNL--SGGQRQRLAIARALLRNPPILILDEATSALD 497

Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLE 239
            +   +    +  L  + R+ LII H  RL      D I VL NG+I++ G +   L  +
Sbjct: 498 TETEALIQDALKKLL-KGRTTLIIAH--RLSTIKNADRIIVLDNGRIVERGTHE-ELLAK 553

Query: 240 ENGYAELIKE 249
              YA L + 
Sbjct: 554 GGLYARLYQA 563


>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
           transporters.  This family includes transporters
           involved in the uptake of various metallic cations such
           as iron, manganese, and zinc.  The ATPases of this group
           of transporters are very similar to members of
           iron-siderophore uptake family suggesting that they
           share a common ancestor.  The best characterized
           metal-type ABC transporters are the YfeABCD system of Y.
           pestis, the SitABCD system of Salmonella enterica
           serovar Typhimurium, and the SitABCD transporter of
           Shigella flexneri.  Moreover other uncharacterized
           homologs of these metal-type transporters are mainly
           found in pathogens like Haemophilus or enteroinvasive E.
           coli isolates..
          Length = 213

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 44/204 (21%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 3   EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
           E+++L          ++  ++ +V+P E +AI+GPNG+GKSTL   + G    + T+G I
Sbjct: 1   EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG--LLKPTSGSI 56

Query: 63  LYKGESI-LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
              G+ +  +   +    +   +   +P+ +  +++M         +R ++ +K      
Sbjct: 57  RVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK------ 110

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              KV +    +G++ ++  R +    SGG+++   + +  + +P L +LDE  +G+D  
Sbjct: 111 --AKVDEALERVGLS-ELADRQIGE-LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166

Query: 182 ALKIAAQGVNALRSQDRSFLIITH 205
             +   + +  LR +  + L++TH
Sbjct: 167 TQEDIYELLRELRREGMTILVVTH 190


>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
           involved in the uptake of siderophores, heme, and
           vitamin B12, are widely conserved in bacteria and
           archaea.  Only very few species lack representatives of
           the siderophore family transporters.  The E. coli BtuCD
           protein is an ABC transporter mediating vitamin B12
           uptake.  The two ATP-binding cassettes (BtuD) are in
           close contact with each other, as are the two
           membrane-spanning subunits (BtuC); this arrangement is
           distinct from that observed for the E. coli lipid
           flippase MsbA.  The BtuC subunits provide 20
           transmembrane helices grouped around a translocation
           pathway that is closed to the cytoplasm by a gate
           region, whereas the dimer arrangement of the BtuD
           subunits resembles the ATP-bound form of the Rad50 DNA
           repair enzyme.  A prominent cytoplasmic loop of BtuC
           forms the contact region with the ATP-binding cassette
           and represent a conserved motif among the ABC
           transporters..
          Length = 180

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 60/234 (25%)

Query: 3   EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
           E++NL          ++  L+L +E  E+V I+GPNG+GKSTL   L+G    + ++G+I
Sbjct: 1   EVENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEI 56

Query: 63  LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF 122
           L  G+ +   S  E A                       KIA                  
Sbjct: 57  LLDGKDLASLSPKELAR----------------------KIAY----------------- 77

Query: 123 TRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI-- 180
              V +    LG+   +  RP N   SGGE++   + +    EP + +LDE  S LDI  
Sbjct: 78  ---VPQALELLGLA-HLADRPFN-ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132

Query: 181 --DALKIAAQGVNALRSQDRSFLIITHYQRLLN--YIKPDTIHVLHNGKIIKTG 230
             + L++  +     R + ++ +++ H    LN      D + +L +G+I+  G
Sbjct: 133 QIELLELLRRLA---RERGKTVVMVLHD---LNLAARYADRVILLKDGRIVAQG 180


>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 345

 Score = 70.8 bits (173), Expect = 3e-13
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 20  RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS 79
             ++L ++  E+VA++GP+G+GKSTL  +++G +     AG I   G  + D S +    
Sbjct: 19  DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE--TPDAGRIRLNGRVLFDVSNLAVRD 76

Query: 80  KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDM 139
           + +   FQ+    P + +   +   L  +++  +E E+       +V ++   + +   +
Sbjct: 77  RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI-----RARVEELLRLVQLE-GL 130

Query: 140 LKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-D 197
             R P  L  SGG+++   + +   +EP + +LDE    LD    K   + +  L  +  
Sbjct: 131 ADRYPAQL--SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG 188

Query: 198 RSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            + + +TH Q        D + VL+ G+I + G 
Sbjct: 189 VTTVFVTHDQEEA-LELADRVVVLNQGRIEQVGP 221


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 16/236 (6%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
           D    I+ G++  +   + VAI+G +G+GKST+  LL   + Y++ +G I   G+ I D 
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDV 330

Query: 73  SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           +  +   + I +  Q  V     I   +++ +     +      +   I DF + + +  
Sbjct: 331 TQ-QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE-- 387

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
              G +  + +R L L  SGGEK+   I +  L  P + ILDE  S LD    +     +
Sbjct: 388 ---GYDTGVGERGLKL--SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246
             + S  R+ L+I H  RL   I  D I VL NG+I++ G +   L      YAE+
Sbjct: 443 REV-SAGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 223

 Score = 69.6 bits (170), Expect = 8e-13
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE+K +       D +I+  ++L V   E +AI GP+G GKSTL  +++       T+G
Sbjct: 3   LLELKQVGYL--AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--ISPTSG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELL 118
            +L++GE +          +  + A Q P      +   + F     N +R  R     L
Sbjct: 59  TLLFEGEDVSTLKPEAYRQQVSYCA-QTPALFGDTVEDNLIFPWQIRN-RRPDRAAALDL 116

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
           +  F      +T          K    L  SGGEK+   +++     P + +LDE  S L
Sbjct: 117 LARFALPDSILT----------KNITEL--SGGEKQRIALIRNLQFMPKILLLDEITSAL 164

Query: 179 DI-DALKIAAQGVNALRSQDRSFLIITH 205
           D  +   I       +R Q+ + L ITH
Sbjct: 165 DESNKRNIEEMIHRYVREQNVAVLWITH 192


>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
           systems, ATPase component [Amino acid transport and
           metabolism].
          Length = 237

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE++NL A       + +RG++L+VE  E+VA++G NG+GK+TL   + G       +G
Sbjct: 3   MLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            I++ GE I      ERA  GI    +     P + + + L +    +R    ++  L  
Sbjct: 59  RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL-- 116

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
               +V ++   L    +   +      SGGE+++  I +  +  P L +LDE   GL
Sbjct: 117 ---EEVYELFPRL---KERRNQRAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167


>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
           duplicated ATPase component [General function prediction
           only].
          Length = 534

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 23/236 (9%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER- 77
           + G++L +   + + ++G +GSGKSTL   L      +   G+I + G+ I   S  E  
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ---GEIRFDGQDIDGLSRKEMR 359

Query: 78  -ASKGIFLAFQYPVEI--PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
              + + + FQ P     P + + Q ++  L       +  E       ++V +   E+G
Sbjct: 360 PLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERD-----QRVIEALEEVG 414

Query: 135 INMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
           ++     R P    FSGG+++   I +  +L+P L +LDE  S LD     + AQ ++ L
Sbjct: 415 LDPATRNRYPHE--FSGGQRQRIAIARALILKPELILLDEPTSALD---RSVQAQVLDLL 469

Query: 194 RS-QDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245
           R  Q +   S+L I+H   ++  +    I V+ +GKI++ G         ++ Y  
Sbjct: 470 RDLQQKHGLSYLFISHDLAVVRALCHRVI-VMRDGKIVEQGPTEAVFANPQHEYTR 524



 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 43/255 (16%)

Query: 1   MLEIKNLRAKI--VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS--TLSYL-LSGHKDY 55
           +L I+NL           E ++G++  +E  E +A++G +GSGKS   LS L L      
Sbjct: 6   LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA 65

Query: 56  EITAGDILYKGESILDWSIVE-RASKG--IFLAFQY------PVEIPGIIMMQFLKIALN 106
              +G IL+ GE +L  S  + R  +G  I + FQ       P+   G  + + L++   
Sbjct: 66  AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG 125

Query: 107 EQRKARNEK--ELL----IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQ 160
             R A   +  ELL    IP+  +++     EL               SGG+++   I  
Sbjct: 126 LSRAAARARALELLELVGIPEPEKRLDAYPHEL---------------SGGQRQRVMIAM 170

Query: 161 MRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPD 216
               EP L I DE  + LD+    + AQ ++ L+        + L ITH   ++     D
Sbjct: 171 ALANEPDLLIADEPTTALDV---TVQAQILDLLKELQAELGMAILFITHDLGIVRKFA-D 226

Query: 217 TIHVLHNGKIIKTGD 231
            ++V+ +G+I++TG 
Sbjct: 227 RVYVMQHGEIVETGT 241


>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
           component [General function prediction only].
          Length = 249

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 8/215 (3%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG-ESILDWSIVER 77
           +  L+  V+P E+  ++GPNG+GK+TL  +++G        G++L+ G   +        
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKLPEHRI 78

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLIPDFTRKVRKITAELGIN 136
           A  GI   FQ P     + + + L++ALN  +    +    L  +  R++ ++ A +G+ 
Sbjct: 79  ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D   R   L  S G+K+  EI  +   +P L +LDE  +G+     +  A+ + +L   
Sbjct: 139 -DERDRLAAL-LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-G 195

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
             S L++ H    +  I  D + VLH G ++  G 
Sbjct: 196 KHSILVVEHDMGFVREIA-DKVTVLHEGSVLAEGS 229


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
           components of the bacterial periplasmic histidine and
           glutamine permeases, repectively.  Histidine permease is
           a multisubunit complex containing the HisQ and HisM
           integral membrane subunits and two copies of HisP.  HisP
           has properties intermediate between those of integral
           and peripheral membrane proteins and is accessible from
           both sides of the membrane, presumably by its
           interaction with HisQ and HisM.  The two HisP subunits
           form a homodimer within the complex.  The domain
           structure of the amino acid uptake systems is typical
           for prokaryote extracellular solute binding
           protein-dependent uptake systems.  All of the amino acid
           uptake systems also have at least one, and in a few
           cases, two extracellular solute binding proteins located
           in the periplasm of Gram-negative bacteria, or attached
           to the cell membrane of Gram-positive bacteria.  The
           best-studied member of the PAAT (polar amino acid
           transport) family is the HisJQMP system of S.
           typhimurium, where HisJ is the extracellular solute
           binding proteins and HisP is the ABC protein..
          Length = 213

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 19/208 (9%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +EIKNL       D  +++G++L V+  EVV I+GP+GSGKSTL   ++  +  E  +G 
Sbjct: 1   IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--EPDSGT 56

Query: 62  ILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           I+  G  + D    +    + + + FQ     P + +++ + +A  + +   ++ E    
Sbjct: 57  IIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG-MSKAEA--- 112

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSG 177
               +  ++  ++G+       P  L  SGG+++   IA  L M    P + + DE  S 
Sbjct: 113 --EERALELLEKVGLADKADAYPAQL--SGGQQQRVAIARALAMN---PKVMLFDEPTSA 165

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITH 205
           LD + +      +  L  +  + +++TH
Sbjct: 166 LDPELVGEVLDVMKDLAEEGMTMVVVTH 193


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 28/242 (11%)

Query: 4   IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITAGDI 62
           I  +  K      +I++ ++  ++P E+  ++GP GSGK+TL   L+G   ++  ++G+I
Sbjct: 116 ILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI 175

Query: 63  LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQ-------RKARNEK 115
            Y G    D           + + +  V  P + + + L  A   +         +R EK
Sbjct: 176 TYNG---HDLKEFVPKKTVAYNS-EQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREK 231

Query: 116 ELLIPDFTRKV--RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
              + D+  K+      A+  +  DM++     G SGGE+K   I +M +   S+   DE
Sbjct: 232 LAAMTDYLLKILGLDHCADTLVGNDMVR-----GVSGGERKRVSIGEMLVGPASILFWDE 286

Query: 174 TDSGLD-IDALKIAAQGVNALRSQ----DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
              GLD   A +I    + ALR        + L+         Y   D + +L  G  I 
Sbjct: 287 ITRGLDSSTAFQI----IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY 342

Query: 229 TG 230
            G
Sbjct: 343 QG 344



 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 9/191 (4%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
           +++  ++   +P  + A+MG +G+GK+TL  +L+G K      GDIL  G    D     
Sbjct: 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP-KDQETFA 863

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKI-ALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           R S       Q  +  P + + + L+  A     K  +++E    ++  +V ++  EL  
Sbjct: 864 RVSG---YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY--EYVEEVIELL-ELKE 917

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI-LDETDSGLDIDALKIAAQGVNALR 194
             D L      G S  ++K   I    +  PS  + LDE  SGLD  A  I  + +  L 
Sbjct: 918 YADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977

Query: 195 SQDRSFLIITH 205
              ++ L   H
Sbjct: 978 DTGQTILCTIH 988


>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
           ModC is an ABC-type transporter and the ATPase component
           of a molybdate transport system that also includes the
           periplasmic binding protein ModA and the membrane
           protein ModB.  ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 235

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 19/231 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L+++NL     +     ++ ++L+VE  +   I+GP GSGKS L   ++G    +  +G 
Sbjct: 1   LKVENLSKDWKEFK---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGK 55

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G+ I +    +R    I    Q     P + + + +   L +++  + E E     
Sbjct: 56  ILLNGKDITNLPPEKR---DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE----- 107

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
             RKV +I   LGI+  + ++P  L  SGGE++   I +  ++ P + +LDE  S LD+ 
Sbjct: 108 --RKVLEIAEMLGIDHLLNRKPETL--SGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163

Query: 182 A-LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
              K+  +     +    + L +TH      +   D + ++ NGK+I+ G 
Sbjct: 164 TKEKLREELKKIRKEFGVTVLHVTHDFEEA-WALADKVAIMLNGKLIQVGK 213


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA-- 59
           +E+++L       D   ++ +NL +  ++V A++GP+G GKSTL   L+   D    A  
Sbjct: 8   IEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 60  -GDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
            G++L  G++I D  + V    + + + FQ P   P  I   +  +A   +     +KEL
Sbjct: 66  EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSI---YDNVAYGLRLHGIKDKEL 122

Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDET 174
              +      K  A      D L +   LG SGG+++   IA  L +   +P + ++DE 
Sbjct: 123 --DEIVESSLKKAALWDEVKDRLHKS-ALGLSGGQQQRLCIARALAV---KPEVLLMDEP 176

Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            S LD I  LKI  + +  L+ +  + +I+TH  +    +  D     + G++++ G 
Sbjct: 177 TSALDPISTLKI-EELITELK-KKYTIVIVTHNMQQAARVS-DYTAFFYLGELVEFGP 231


>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
           proteins, ABC superfamily [Lipid transport and
           metabolism, General function prediction only].
          Length = 885

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L + NL +K+       +RGL+  V P E   ++G NG+GK+T   +L+G  + + T+G+
Sbjct: 565 LVLNNL-SKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTG--ETKPTSGE 621

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
            L KG  I   +  ++  K +    Q+      +   + L+     +   R+       D
Sbjct: 622 ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRS-------D 674

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
               + K+   +G       + +   +SGG K+        + +PS+ +LDE  +GLD  
Sbjct: 675 IGSAIEKLLRLVG-LGPYANKQVRT-YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732

Query: 182 ALKIAAQGVNALRSQDRSFLIITHY 206
           A +     +  LR   ++ ++ +H 
Sbjct: 733 ARRHLWDIIARLRKNGKAIILTSHS 757


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
           organic solvents, ATPase component [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 67/244 (27%), Positives = 102/244 (41%), Gaps = 17/244 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ++E++ +       D  I+ G++L V   E++AI+G +GSGKSTL  L+ G        G
Sbjct: 8   LIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--RPDKG 63

Query: 61  DILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
           +IL  GE I   S  E     K + + FQ         +   L +  N     R   +L 
Sbjct: 64  EILIDGEDIPQLSEEELYEIRKRMGVLFQ------QGALFSSLTVFENVAFPLREHTKLP 117

Query: 119 IPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
                  V      +G+        P  L  SGG +K   + +   L+P L  LDE  SG
Sbjct: 118 ESLIRELVLMKLELVGLRGAAADLYPSEL--SGGMRKRVALARAIALDPELLFLDEPTSG 175

Query: 178 LD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
           LD I A  I         +   + +++TH    L  I  D + VL +GK+I  G     L
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI-ADRVAVLADGKVIAEGTPEELL 234

Query: 237 DLEE 240
             ++
Sbjct: 235 ASDD 238


>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
           ABC transporters involved in peptide antibiotic
           resistance.  Bacitracin is a dodecapeptide antibiotic
           produced by B. licheniformis and B. subtilis.  The
           synthesis of bacitracin is non-ribosomally catalyzed by
           a multienzyme complex BcrABC.  Bacitracin has potent
           antibiotic activity against gram-positive bacteria.  The
           inhibition of peptidoglycan biosynthesis is the best
           characterized bacterial effect of bacitracin.  The
           bacitracin resistance of B. licheniformis is mediated by
           the ABC transporter Bcr which is composed of two
           identical BcrA ATP-binding subunits and one each of the
           integral membrane proteins, BcrB and BcrC.  B. subtilis
           cells carrying bcr genes on high-copy number plasmids
           develop collateral detergent sensitivity, a similar
           phenomenon in human cells with overexpressed multi-drug
           resistance P-glycoprotein..
          Length = 208

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 19/214 (8%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
            ++  ++L V+  E+   +GPNG+GK+T   ++ G    +  +G+I + G+S        
Sbjct: 14  RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQK---NI 68

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
            A + I    + P   P +   + L++           + L I    +++ ++   +G+ 
Sbjct: 69  EALRRIGALIEAPGFYPNLTARENLRLLA---------RLLGIRK--KRIDEVLDVVGLK 117

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D  K+ +  GFS G K+   I    L  P L ILDE  +GLD D +K   + + +LR Q
Sbjct: 118 -DSAKKKVK-GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             + LI +H    +  +  D I +++ GK+I+ G
Sbjct: 176 GITVLISSHLLSEIQKVA-DRIGIINKGKLIEEG 208


>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 263

 Score = 66.1 bits (161), Expect = 8e-12
 Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 1   MLEIKNLRA---KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
           M+ + N      K    +   + GL+L++   + V ++G NG+GKSTL   ++G  D + 
Sbjct: 1   MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG--DLKP 58

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKE 116
           T+G IL  G  +   S+ +RA+  +   FQ P+      +     +AL E R K R    
Sbjct: 59  TSGQILIDGVDVTKKSVAKRANL-LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSS 117

Query: 117 LLIPDFTRKVRKITAELGINM-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
            L        R+  A LG+ + + L   + L  SGG+++   +L   L  P + +LDE  
Sbjct: 118 ALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHT 176

Query: 176 SGLDIDALKIAAQGVNALRSQDR-SFLIITHY-QRLLNYIKPDTIHVLHNGKIIK 228
           + LD    +   +    +  + + + L++TH  +  L+Y   + + +LH+GKI+ 
Sbjct: 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY--GNRLIMLHSGKIVL 229


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 65/243 (26%)

Query: 1   MLEIKNL-------RAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK 53
           +LE+KNL       +        + + G++  ++  E + ++G +G GKSTL  L+ G  
Sbjct: 4   LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL- 62

Query: 54  DYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN 113
             E T+G+IL++G+ I   S  ER                                    
Sbjct: 63  -EEPTSGEILFEGKDITKLSKEER------------------------------------ 85

Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
                      +V ++  ++G+  + L R P     SGG+++   I +   L P L + D
Sbjct: 86  ---------RERVLELLEKVGLPEEFLYRYPHE--LSGGQRQRIGIARALALNPKLIVAD 134

Query: 173 ETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
           E  S LD+    + AQ +N L+        ++L I+H   ++ YI  D I V++ GKI++
Sbjct: 135 EPVSALDV---SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS-DRIAVMYLGKIVE 190

Query: 229 TGD 231
            G 
Sbjct: 191 IGP 193


>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
           a bacterial ABC-type Na+ transport system called NatAB,
           which catalyzes ATP-dependent electrogenic Na+ extrusion
           without mechanically coupled proton or K+ uptake.  NatB
           possess six putative membrane spanning regions at its
           C-terminus.  In B. subtilus, NatAB is inducible by
           agents such as ethanol and protonophores, which lower
           the protonmotive force across the membrane.  The closest
           sequence similarity to NatA is exhibited by DrrA of the
           two-component daunomycin- and doxorubicin-efflux system.
            Hence, the functional NatAB is presumably assembled
           with two copies of a single ATP-binding protein and a
           single intergral membrane protein..
          Length = 218

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 38/243 (15%)

Query: 1   MLEIKNL--RAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           M+    L  R + V    + + G++  V+P EV  ++GPNG+GK+T   +L+G    E  
Sbjct: 1   MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPD 58

Query: 59  AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL- 117
           AG     G                F   + P E    +        L ++  AR   E  
Sbjct: 59  AGFATVDG----------------FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYF 102

Query: 118 -----LIPD-FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
                L  D  T ++ ++   LG+  ++L R +  GFS G ++   I +  + +P + +L
Sbjct: 103 AGLYGLKGDELTARLEELADRLGME-ELLDRRVG-GFSTGMRQKVAIARALVHDPPVLLL 160

Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKII 227
           DE  +GLD+ A +   + +  LR+  +  L  TH     +RL      D + VLH G+++
Sbjct: 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLC-----DRVVVLHRGRVV 215

Query: 228 KTG 230
             G
Sbjct: 216 YEG 218


>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
           system, ATPase component [Carbohydrate transport and
           metabolism / Cell envelope biogenesis, outer membrane].
          Length = 249

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 29/235 (12%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
             ++ ++ ++   E V I+G NG+GKSTL  L++G   Y+ T+G +   G+  +   I  
Sbjct: 41  WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--YKPTSGKVKVTGK--VAPLI-- 94

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
                +   F    E+ G   +    + L   RK  +EK   I +F        AELG  
Sbjct: 95  ----ELGAGFDP--ELTGRENIYLRGLILGLTRKEIDEKVDEIIEF--------AELG-- 138

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D + +P+    SG   ++A  +    +EP + +LDE  +  D    +   + +N L  +
Sbjct: 139 -DFIDQPVKTYSSGMYARLAFSVATH-VEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196

Query: 197 DRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
           +++ ++++H    L  IK   D    L +G+I   G     +   E   A+ +  
Sbjct: 197 NKTIVLVSHD---LGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADRLSL 248


>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 339

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 49/240 (20%), Positives = 108/240 (45%), Gaps = 24/240 (10%)

Query: 1   MLEIKNLR---AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
           M+E++N+     +        +  ++L++   E+  I+G +G+GKSTL  L++  +    
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-- 58

Query: 58  TAGDILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
           T+G +   G+ +  L  + + +  + I + FQ+   +    + + +   L      + E 
Sbjct: 59  TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
           +       ++V ++   +G++    + P  L  SGG+K+   I +     P + + DE  
Sbjct: 119 K-------QRVAELLELVGLSDKADRYPAQL--SGGQKQRVAIARALANNPKILLCDEAT 169

Query: 176 SGLDIDALKIAAQGVNALRSQDRSF----LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           S LD    +     +  L+  +R      ++ITH   ++  I  D + VL  G++++ G 
Sbjct: 170 SALDP---ETTQSILELLKDINRELGLTIVLITHEMEVVKRI-CDRVAVLDQGRLVEEGT 225


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 18/217 (8%)

Query: 14  TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
               I++G++  ++  E + I+GP+GSGKSTL+ LL G   +  T+G +   G  +  W 
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG--IWPPTSGSVRLDGADLRQW- 403

Query: 74  IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR--KVRKITA 131
             +R   G  + +     +P  + +    IA N  R         + +  R   V ++  
Sbjct: 404 --DREQLGRHIGY-----LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELIL 456

Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGLDIDALKIAAQG 189
            L    D          SGG+++   I   R L  +P L +LDE +S LD +     A  
Sbjct: 457 RLPQGYDTRIGEGGATLSGGQRQ--RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           + A +++  + ++I H    L  +  D I VL +G+I
Sbjct: 515 ILAAKARGGTVVVIAHRPSALASV--DKILVLQDGRI 549


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 64.6 bits (157), Expect = 3e-11
 Identities = 51/213 (23%), Positives = 105/213 (49%), Gaps = 23/213 (10%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITAGDILYKGESILDWSIVE 76
           ++R LNL+++P +VVA++G +G+GK+TL  ++ G  K      G+  Y+ +S        
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR----GEEKYRPDSGKVEVPKN 453

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
             S            IPG    +F ++ + E  +++        D    V +I    G++
Sbjct: 454 TVS----------ALIPGEYEPEFGEVTILEHLRSK------TGDLNAAV-EILNRAGLS 496

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRS 195
             +L R      S G+K+ A++ ++    P++ ++DE  + LD + A+++A +     R 
Sbjct: 497 DAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556

Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
              + +++TH   + N ++PDT+ ++  GK+  
Sbjct: 557 AGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589


>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
           Processing; TAP is essential for peptide delivery from
           the cytosol into the lumen of the endoplasmic reticulum
           (ER), where these peptides are loaded on major
           histocompatibility complex (MHC) I molecules.  Loaded
           MHC I leave the ER and display their antigenic cargo on
           the cell surface to cytotoxic T cells.  Subsequently,
           virus-infected or malignantly transformed cells can be
           eliminated.  TAP belongs to the large family of
           ATP-binding cassette (ABC) transporters, which
           translocate a vast variety of solutes across membranes..
          Length = 226

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 23/218 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           DT +++ ++  + P EV A++GP+GSGKST+  LL     Y+   G +L  G+ I  +  
Sbjct: 26  DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKPISQYEH 83

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQF---LKIALNEQRKARNEK---ELLIPDFTRKVRK 128
               SK + L  Q PV     +       L+    E  K   +K      I +       
Sbjct: 84  KYLHSK-VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISEL------ 136

Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
                G + ++ ++   L  SGG+K+   I +  +  P + ILDE  S LD ++ +   Q
Sbjct: 137 ---ASGYDTEVGEKGSQL--SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191

Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
            +     + R+ L+I H  RL    + D I VL  G+I
Sbjct: 192 ALYD-WPERRTVLVIAH--RLSTVERADQILVLDGGRI 226


>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
           bacterial exporter complex that confers resistance to
           the antibiotics daunorubicin and doxorubicin.  In
           addition to DrrA, the complex includes an integral
           membrane protein called DrrB.  DrrA belongs to the ABC
           family of transporters and shares sequence and
           functional similarities with a protein found in cancer
           cells called  P-glycoprotein.  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region in
           addition to the Walker A motif/P-loop and Walker B motif
           commonly found in a number of ATP- and GTP-binding and
           hydrolyzing proteins..
          Length = 220

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 17/230 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++NL  K    D E +RG++ +V   E+  ++GPNG+GK+T   +L+     + T+G 
Sbjct: 1   IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGR 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
               G  ++      R   GI   FQ       +   + L I          E+      
Sbjct: 57  ATVAGHDVVREPREVRRRIGI--VFQDLSVDDELTGWENLYIHARLYGVPGAER------ 108

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              ++ ++   +G+ ++   R +   +SGG ++  EI +  +  P +  LDE   GLD  
Sbjct: 109 -RERIDELLDFVGL-LEAADRLVK-TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165

Query: 182 ALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
                 + +  L      + L+ THY      +  D + ++ +G+II  G
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLC-DRVAIIDHGRIIAEG 214


>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 213

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ML +KN+  ++    + ++  +N  +   E+V +MGP+G GKSTL   + G    + +  
Sbjct: 2   MLCLKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
             L+  E  LD     +   GI   FQ  +  P + + Q L  AL    K    +     
Sbjct: 60  GELWLNEQRLDMLPAAQRQIGIL--FQDALLFPHLSVGQNLLFALPATLKGNARRNAANA 117

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
              R         G++    + P  L  SGG++    +L+  L +P   +LDE  S LD+
Sbjct: 118 ALER--------SGLDGAFHQDPATL--SGGQRARVALLRALLAQPKALLLDEPFSRLDV 167

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
                      ALR Q R ++    +  +     P T+ V H+ + +  G   I +   E
Sbjct: 168 -----------ALRDQFRQWV----FSEVRAAGIP-TVQVTHDLQDVPAGSRVIEMAQWE 211


>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
           component of the spermidine/putrescine-preferential
           uptake system consisting of PotA, -B, -C, and -D.  PotA
           has two domains with the N-terminal domain containing
           the ATPase activity and the residues required for
           homodimerization with PotA and heterdimerization with
           PotB.  ABC transporters are a large family of proteins
           involved in the transport of a wide variety of different
           compounds, like sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 232

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 22/232 (9%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++N+  K        + G++L ++  E   ++GP+G GK+TL  L++G +    T+G+
Sbjct: 1   IELENVS-KFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGE 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL  G+ I +    +R    +   FQ     P   +  F  IA   + K   + E+    
Sbjct: 57  ILLDGKDITNLPPHKR---PVNTVFQNYALFPH--LTVFENIAFGLRLKKLPKAEI---- 107

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              +V +    + +     ++P  L  SGG+++   I +  + EP + +LDE    LD+ 
Sbjct: 108 -KERVAEALDLVQLEGYANRKPSQL--SGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164

Query: 182 ALKIAAQGVNALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            L+   Q +   R Q     +F+ +TH Q     +  D I V++ GKI + G
Sbjct: 165 -LRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMS-DRIAVMNKGKIQQIG 213


>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
           system; part of the binding-protein-dependent transport
           system tbpA-thiPQ for thiamine and TPP.  Probably
           responsible for the translocation of thiamine across the
           membrane. ABC transporters are a large family of
           proteins involved in the transport of a wide variety of
           different compounds, like sugars, ions, peptides, and
           more complex organic molecules.  The nucleotide binding
           domain shows the highest similarity between all members
           of the family.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 18/211 (8%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TAGDILYKGESILDWSIVERASK 80
            +L     E+ AI+GP+GSGKSTL  L++G   +E   +G +L  G   +D +    A +
Sbjct: 17  FDLTFAQGEITAIVGPSGSGKSTLLNLIAG---FETPQSGRVLING---VDVTAAPPADR 70

Query: 81  GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDML 140
            + + FQ       + + Q + + L+   K   E         + +    A +G+     
Sbjct: 71  PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR-------QAIEVALARVGLAGLEK 123

Query: 141 KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR-S 199
           + P  L  SGGE++   + ++ + +  + +LDE  + LD          V  L ++ + +
Sbjct: 124 RLPGEL--SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181

Query: 200 FLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            L++TH       +    +  L NG+I   G
Sbjct: 182 VLMVTHQPEDAKRLAQRVVF-LDNGRIAAQG 211


>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
           transporters homologous to the Drosophila white gene,
           which acts as a dimeric importer for eye pigment
           precursors.  The eye pigmentation of Drosophila is
           developed from the synthesis and deposition in the cells
           of red pigments, which are synthesized from guanine, and
           brown pigments, which are synthesized from tryptophan.
           The pigment precursors are encoded by the white, brown,
           and scarlet genes, respectively.  Evidence from genetic
           and biochemical studies suggest that the White and Brown
           proteins function as heterodimers to import guanine,
           while the White and Scarlet proteins function to import
           tryptophan.  However, a recent study also suggests that
           White may be involved in the transport of a metabolite,
           such as 3-hydroxykynurenine, across intracellular
           membranes.  Mammalian ABC transporters belonging to the
           White subfamily (ABCG1, ABCG5, and ABCG8) have been
           shown to be involved in the regulation of
           lipid-trafficking mechanisms in macrophages,
           hepatocytes, and intestinal mucosa cells.  ABCG1 (ABC8),
           the human homolog of the Drosophila white gene is
           induced in monocyte-derived macrophages during
           cholesterol influx mediated by acetylated low-density
           lipoprotein.  It is possible that human ABCG1 forms
           heterodimers with several heterologous partners..
          Length = 226

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 14/227 (6%)

Query: 7   LRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH-KDYEITAGDILYK 65
           L+AK  +    I+  ++L VE  +V+AI+G +GSGK+TL   +SG  +    T+G IL+ 
Sbjct: 11  LKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN 70

Query: 66  GESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125
           G+        +  +   ++  Q  + +PG+ + + L      +   ++       D  RK
Sbjct: 71  GQPRKPDQFQKCVA---YVR-QDDILLPGLTVRETLTYTAILRLPRKS------SDAIRK 120

Query: 126 VR-KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDAL 183
            R +      + +  +   L  G SGGE++   I    L +P + ILDE  SGLD   AL
Sbjct: 121 KRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180

Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            +    ++ L  ++R  ++  H  R   +   D I +L +G+I+ +G
Sbjct: 181 NL-VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
           Protein Dependent) systems that are largely represented
           in archaea and eubacteria and are primarily involved in
           scavenging solutes from the environment.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 178

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 50/226 (22%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+KN+  +       ++  ++L +E  E+VA++GP+GSGKSTL   ++G +  E  +G 
Sbjct: 1   LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGS 56

Query: 62  ILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           IL  GE + D        +  I + FQ                              L P
Sbjct: 57  ILIDGEDLTDLEDELPPLRRRIGMVFQDFA---------------------------LFP 89

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
             T  V +  A              LG SGG+++   + +   ++P + +LDE  S LD 
Sbjct: 90  HLT--VLENIA--------------LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133

Query: 181 DALKIAAQGVNALRSQD-RSFLIITHYQRLLNYIKPDTIHVLHNGK 225
              +     + +L++Q   + +++TH       +  D + VL +GK
Sbjct: 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA-DRVVVLRDGK 178


>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
           the carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           Pentoses include xylose, arabinose, and ribose.
           Important hexoses include glucose, galactose, and
           fructose.  In members of the Carb_monos family, the
           single hydrophobic gene product forms a homodimer while
           the ABC protein represents a fusion of two
           nucleotide-binding domains.  However, it is assumed that
           two copies of the ABC domains are present in the
           assembled transporter..
          Length = 163

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 67/217 (30%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
             + + G++L V   EV A++G NG+GKSTL  +LSG   Y+  +G+IL  G+       
Sbjct: 12  GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGK------- 62

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
                          V        +   IA+  Q                          
Sbjct: 63  --------------EVSFASPRDARRAGIAMVYQ-------------------------- 82

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
                         S GE+++ EI +       L ILDE  + L    ++   + +  LR
Sbjct: 83  -------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129

Query: 195 SQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKT 229
           +Q  + + I+H    L+ +    D + VL +G+++ T
Sbjct: 130 AQGVAVIFISHR---LDEVFEIADRVTVLRDGRVVGT 163


>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
           cytochrome bd biogenesis.  The CydC and CydD proteins
           are important for the formation of cytochrome bd
           terminal oxidase of E. coli and it has been proposed
           that they were necessary for biosynthesis of the
           cytochrome bd quinol oxidase and for periplasmic c-type
           cytochromes.  CydCD were proposed to determine a
           heterooligomeric complex important for heme export into
           the periplasm or to be involved in the maintenance of
           the proper redox state of the periplasmic space.  In
           Bacillus subtilius, the absence of CydCD does not affect
           the presence of halo-cytochrome c in the membrane and
           this observation suggests that CydCD proteins are not
           involved in the export of heme in this organism..
          Length = 178

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 57/232 (24%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L I N+     + + ++++ L+L+++  E +A++G +GSGKSTL  LL+G  D +   G+
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGE 58

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   G  + D                             L+ AL+      N++  L   
Sbjct: 59  ITLDGVPVSD-----------------------------LEKALSSLISVLNQRPYLFDT 89

Query: 122 FTRKVRKITAELGINMDMLKRPLNLG--FSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
             R                    NLG  FSGGE++   + ++ L +  + +LDE   GLD
Sbjct: 90  TLRN-------------------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130

Query: 180 -IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            I   ++ +     L+  D++ + ITH   L      D I  L NGKII  G
Sbjct: 131 PITERQLLSLIFEVLK--DKTLIWITH--HLTGIEHMDKILFLENGKIIMQG 178


>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
           ATPase component [Defense mechanisms].
          Length = 267

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 1   MLEIKNLRAKIVDTDT-------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK 53
           +LE++NL                E ++ ++  +   + +AI+G NGSGKSTL+ +L+G  
Sbjct: 4   LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM- 62

Query: 54  DYEITAGDILYKGESILDWSIVERASKGIFLAFQ------YPVEIPGIIMMQFLKIALNE 107
             E T+G+IL     +       R+ K I + FQ       P    G I+   L++  + 
Sbjct: 63  -IEPTSGEILINDHPLHFGDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120

Query: 108 QRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPS 167
           + + R ++   I +  R V  +         ML        + G+K+   + +  +L P 
Sbjct: 121 EPEQRRKQ---IFETLRMVGLLPDHANYYPHML--------APGQKQRVALARALILRPK 169

Query: 168 LCILDETDSGLDIDALKIAAQGVN-ALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHN 223
           + I DE  + LD   + + +Q +N  L  Q++   S++ +T +  ++ +I  D + V+H 
Sbjct: 170 IIIADEALASLD---MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS-DQVLVMHE 225

Query: 224 GKIIKTG 230
           G++++ G
Sbjct: 226 GEVVERG 232


>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
           is an ABC-type transporter encoded by metN of the metNPQ
           operon in Bacillus subtilis that is involved in
           methionine transport.  Other members of this system
           include the MetP permease and  the MetQ substrate
           binding protein.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 233

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)

Query: 1   MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           M+E+KN+     DT  ++  ++ ++L V   E+  I+G +G+GKSTL   ++G +    T
Sbjct: 1   MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--T 58

Query: 59  AGDILYKGESILDWSIVER--ASKGIFLAFQ---------------YPVEIPGIIMMQFL 101
           +G +L  G  +   S  E   A + I + FQ                P+EI G+      
Sbjct: 59  SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK---- 114

Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQM 161
                 + + R  + L +     K     A+L               SGG+K+   I + 
Sbjct: 115 -----AEIEERVLELLELVGLEDKADAYPAQL---------------SGGQKQRVGIARA 154

Query: 162 RLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF----LIITHYQRLLNYIKPDT 217
               P + + DE  S LD    +     +  LR  +R      ++ITH   ++  I  D 
Sbjct: 155 LANNPKVLLCDEATSALDP---ETTQSILALLRDINRELGLTIVLITHEMEVVKRI-CDR 210

Query: 218 IHVLHNGKIIKTGD 231
           + V+  G++++ G 
Sbjct: 211 VAVMEKGEVVEEGT 224


>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
           central component of the secretion machinery that
           translocates the toxin, hemolysin A, in a
           Sec-independent fashion across both membranes of E.
           coli.  The hemolysin A (HlyA) transport machinery is
           composed of the ATP-binding cassette (ABC) transporter
           HlyB located in the inner membrane, hemolysin D (HlyD),
           also anchored in the inner membrane, and TolC, which
           resides in the outer membrane.  HlyD apparently forms a
           continuous channel that bridges the entire periplasm,
           interacting with TolC and HlyB.  This arrangement
           prevents the appearance of periplasmic intermediates of
           HlyA during substrate transport.  Little is known about
           the molecular details of HlyA transport, but it is
           evident that ATP-hydrolysis by the ABC-transporter HlyB
           is a necessary source of energy..
          Length = 237

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 34/241 (14%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
            I+  ++L+++P EVV I+G +GSGKSTL+ L+     Y    G +L  G    D ++ +
Sbjct: 16  VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGH---DLALAD 70

Query: 77  RAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP-----DFTRKVRK- 128
            A   + + +  Q  V     I      IAL +   +              DF  ++ + 
Sbjct: 71  PAWLRRQVGVVLQENVLFNRSIRDN---IALADPGMSMERVIEAAKLAGAHDFISELPEG 127

Query: 129 ---ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
              I  E G            G SGG+++   I +  +  P + I DE  S LD ++   
Sbjct: 128 YDTIVGEQGA-----------GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176

Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245
             + ++ +    R+ +II H  RL      D I V+  G+I++ G +   L  E   YA 
Sbjct: 177 IMRNMHDI-CAGRTVIIIAH--RLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAY 232

Query: 246 L 246
           L
Sbjct: 233 L 233


>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
           component/photorepair protein PhrA [Inorganic ion
           transport and metabolism].
          Length = 257

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 29/242 (11%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ++E+KN+   +     +I+  L+ +V P E  AI+GPNG+GK+TL  LL+G  ++  ++G
Sbjct: 31  LIELKNV--SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG--EHPPSSG 86

Query: 61  DILYKGESILDWSIVERASKGI-----FLAFQYPVEIPG---IIMMQFLKIALNEQRKAR 112
           D+   G        +    K I      L  ++ V       ++   F  I + ++    
Sbjct: 87  DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA 146

Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
            +            + +   LG    +  RP     S GE++   I +  + +P L ILD
Sbjct: 147 EDLA--------AAQWLLELLGA-KHLADRPF-GSLSQGEQRRVLIARALVKDPELLILD 196

Query: 173 ETDSGLDIDALKIAAQGVN--ALRSQDRSFLIITHYQRLLNYIKPDTIHVLH--NGKIIK 228
           E   GLD+ A +     +   A      + L +TH+      I P   H L    G+++ 
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH---AEEIPPCFTHRLLLKEGEVVA 253

Query: 229 TG 230
            G
Sbjct: 254 QG 255


>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
           [Energy production and conversion / Inorganic ion
           transport and metabolism].
          Length = 245

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 29/237 (12%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE+ +L  K   +  + +R ++ + E  E+  ++G NG+GK+TL  +++        +G
Sbjct: 1   MLEVTDL-TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSG 57

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE------ 114
            +   G   +                + P  +   I + F +  L  +  AR        
Sbjct: 58  KVTIDGVDTV----------------RDPSFVRRKIGVLFGERGLYARLTARENLKYFAR 101

Query: 115 -KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
              L   +   ++ +++  L +   + +R     FS G K+   I +  + +PS+ +LDE
Sbjct: 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVHDPSILVLDE 159

Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             SGLDI   +     +  L+++ R+ +  +H  + +  +  D + VLH G+++  G
Sbjct: 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL-CDRVIVLHKGEVVLEG 215


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
           ATPase component [Inorganic ion transport and
           metabolism].
          Length = 258

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 20/239 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+E+KNL +K      + ++ +NL++   E+VAI+GP+G+GKSTL   L+G  D   T+G
Sbjct: 3   MIEVKNL-SKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSG 59

Query: 61  DILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIA-LNEQRKARNEKEL 117
           +IL+ G  I  L    + +  + I + FQ    +P + +++ + +  L      R+    
Sbjct: 60  EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS---- 115

Query: 118 LIPDFTRKVRKIT----AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
           L   F+++ +         +GI     +R   L  SGG+++   I +  + +P + + DE
Sbjct: 116 LFGLFSKEDKAQALDALERVGILDKAYQRASTL--SGGQQQRVAIARALVQQPKIILADE 173

Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTG 230
             + LD ++ K     +  +  +D   +I+  +Q  ++  K   D I  L  G+I+  G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDG 230


>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
           lysophospholipase L1 biosynthesis, ATPase component
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 228

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 1   MLEIKNLRAKIVDTDTE--IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           ++E+ +L   +   + E  I++G+ L V+  E VAI+GP+GSGKSTL  +L+G  D   +
Sbjct: 6   IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PS 63

Query: 59  AGDILYKGESILDWSIVERA---SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
           +G++   G+ +       RA   ++ +   FQ    IP +  ++ + + L    + R E 
Sbjct: 64  SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL----ELRGES 119

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
                D     + +   +G+   +   P  L  SGGE++   + +     P +   DE  
Sbjct: 120 S---ADSRAGAKALLEAVGLGKRLTHYPAQL--SGGEQQRVALARAFAGRPDVLFADEPT 174

Query: 176 SGLDID-ALKIAAQGVNALRSQDRSFLIITHYQRL 209
             LD     KIA       R +  + +++TH  +L
Sbjct: 175 GNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209


>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
           [General function prediction only].
          Length = 614

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 28/222 (12%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
             +  I + LN  ++    VA++GPNG+GKSTL  L++G  D + T G +     + L  
Sbjct: 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG--DLQPTIGMVSRHSHNKL-- 455

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
                      LA Q  ++   +  M  +    +E+                ++R I   
Sbjct: 456 -----PRYNQHLAEQLDLDKSSLEFM--MPKFPDEKELE-------------EMRSILGR 495

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
            G+  D    P++   S G+++     ++ + +P L +LDE  + LDI+ +   A    A
Sbjct: 496 FGLTGDAQVVPMSQ-LSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA---EA 551

Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSI 234
           +       ++++H  RL++ +  +     +       GD  I
Sbjct: 552 INEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593



 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 28/249 (11%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
           E+I+ + L++       ++GPNGSGKST    ++G ++  I      Y     ++ S  +
Sbjct: 89  ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG-REVPIPEHIDFYLLSREIEPSEKQ 147

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-----------K 125
                +               +++L   L +    + EK+ L   + R           K
Sbjct: 148 AVQAVVMETDH------ERKRLEYLAEDLAQACDDK-EKDELDELYERLDEMDNDTFEAK 200

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
             KI   LG   +M  + +    SGG +  A + +    +P L +LDE  + LD++A+  
Sbjct: 201 AAKILHGLGFLSEMQDKKVK-DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVW 259

Query: 186 AAQGVNALRSQDRSFLIIT-HYQRLLNYIKPDTIHVLHNGKIIKTGDYSI----ALDLEE 240
             +    L   DR  L+I  H Q  LN +  + IH+ +   I   G+Y        +LEE
Sbjct: 260 LEE---YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEE 316

Query: 241 NGYAELIKE 249
           N      K+
Sbjct: 317 NQMKAYEKQ 325


>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
           system, ATPase component.  The biological function of
           this family is not well characterized, but display ABC
           domains similar to members of ABCA subfamily.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides, and more complex organic
           molecules.  The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 211

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 52/214 (24%), Positives = 102/214 (47%), Gaps = 18/214 (8%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            + G++L + P  +  ++GPNG+GK+TL  +L+       ++G I   G+ +L      R
Sbjct: 15  ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT--PPSSGTIRIDGQDVLKQPQKLR 71

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
              G +L  ++ V  P   + +FL  IA          K +   +   +V ++   + + 
Sbjct: 72  RRIG-YLPQEFGV-YPNFTVREFLDYIAW--------LKGIPSKEVKARVDEVLELVNLG 121

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D  K+ +    SGG ++   I Q  + +PS+ I+DE  +GLD    +I  + + +   +
Sbjct: 122 -DRAKKKIG-SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           DR  ++ TH    +  +  + + VL+ GK++  G
Sbjct: 179 DRIVILSTHIVEDVESLC-NQVAVLNKGKLVFEG 211


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
           transport system.  Phosphonates are a class of
           organophosphorus compounds characterized by a chemically
           stable carbon-to-phosphorus (C-P) bond.  Phosphonates
           are widespread among naturally occurring compounds in
           all kingdoms of wildlife, but only procaryotic
           microorganisms are able to cleave this bond.  Certain
           bacteria such as E. coli can use alkylphosphonates as a
           phosphorus source.  ABC transporters are a subset of
           nucleotide hydrolases that contain a signature motif,
           Q-loop, and H-loop/switch region, in addition to, the
           Walker A motif/P-loop and Walker B motif commonly found
           in a number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 241

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++NL +K      + ++ ++L + P E VA++GP+G+GKSTL   L+G    E T+G 
Sbjct: 1   IEVENL-SKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGS 57

Query: 62  ILYKGESILDWSIVE--RASKGIFLAFQYPVEIPGIIMMQ-FLKIALNEQRKARNEKELL 118
           +L  G  I         +  + I + FQ    I  + +++  L   L  +   R+   L 
Sbjct: 58  VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
             +  ++       +G+     +R   L  SGG+++   I +  + +P L + DE  + L
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQRADQL--SGGQQQRVAIARALMQQPKLILADEPVASL 175

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227
           D  + +     +  +  ++   +I++ +Q  L     D I  L +G+I+
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224


>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
           complex cysAWTP involved in sulfate import.  Responsible
           for energy coupling to the transport system.  The
           complex is composed of two ATP-binding proteins (cysA),
           two transmembrane proteins (cysT and cysW), and a
           solute-binding protein (cysP).  ABC transporters are a
           large family of proteins involved in the transport of a
           wide variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 239

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 26/220 (11%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  ++L +   E+VA++GP+GSGK+TL  L++G +     +G IL+ GE   D  + ER 
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQER- 74

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
              +   FQ+      + +   +   L  + ++    E  I     ++ K+     + +D
Sbjct: 75  --NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL-----VQLD 127

Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198
            L        SGG+++   + +   +EP + +LDE    LD       A+    LR   R
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD-------AKVRKELRRWLR 180

Query: 199 SF--------LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
                     + +TH Q     +  D + V++ G+I + G
Sbjct: 181 RLHDELHVTTVFVTHDQEEALEVA-DRVVVMNKGRIEQVG 219


>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 256

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 27/243 (11%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+++L  +    + E+++G++L+    +V++I+G +GSGKST    ++  +  + +AG 
Sbjct: 7   LEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGS 62

Query: 62  ILYKGESI------------LDWSIVERASKGIFLAFQYPVEIPGIIMMQ-FLKIALNEQ 108
           I   GE I             D   ++R    + + FQ+      + +++  ++  ++  
Sbjct: 63  IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122

Query: 109 RKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSL 168
             ++ E          +  K  A++GI       P +L  SGG+++   I +   +EP +
Sbjct: 123 GVSKAEA-------IERAEKYLAKVGIAEKADAYPAHL--SGGQQQRVAIARALAMEPEV 173

Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
            + DE  S LD + +    + +  L  + R+ +++TH       +    I  LH GKI +
Sbjct: 174 MLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF-LHQGKIEE 232

Query: 229 TGD 231
            G 
Sbjct: 233 EGP 235


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
             ++++G++  +   E VAI+G NGSGKST+  LL    DY    G IL  G+ I    +
Sbjct: 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYS---GSILIDGQDI--KEV 418

Query: 75  VERASKG-IFLAFQYPVEIPGIIMMQFL---KIALNEQRKARNEKELLIPDFTRKVRKIT 130
              + +  I +  Q  V     I+         A +E+     ++  L    +R      
Sbjct: 419 SLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQ 478

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
             +G    ML        SGGEK+   + +  L +  + +LDE  S LD +  +     +
Sbjct: 479 TLVGERGLML--------SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
             + S  R+ ++I H   LL     D I VL NG + + G +S  L
Sbjct: 531 MDVMS-GRTVIMIVHRLDLLK--DFDKIIVLDNGTVKEYGTHSELL 573


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide-binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 157

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
            SGG+++   + +  LL P L +LDE  SGLD  + +   + +  L  + R+ +I+TH  
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 208 RLLNYIKPDTIHVLHNGK 225
            L      D + VL +GK
Sbjct: 141 ELAELA-ADRVIVLKDGK 157



 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 3  EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
          EI+NL  +        +  ++L ++  E+VA++GPNGSGKSTL   ++G    + T+G+I
Sbjct: 1  EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEI 56

Query: 63 LYKGESILDWSIVERASKGIFLAFQ 87
          L  G+ I    + E   + I    Q
Sbjct: 57 LIDGKDIAKLPL-EELRRRIGYVPQ 80


>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter.  ABC transporters for a large
           family of proteins responsible for translocation of a
           variety of compounds across biological membranes. ABC
           transporters are the largest family of proteins in many
           completely sequenced bacteria. ABC transporters are
           composed of two copies of this domain and two copies of
           a transmembrane domain pfam00664. These four domains may
           belong to a single polypeptide or belong in different
           polypeptide chains.
          Length = 119

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 43  STLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK 102
           STL  L++G    + T+G IL  GE   D S  +   K I + FQ P   P + + + L 
Sbjct: 1   STLLKLITGL--LQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLF 58

Query: 103 IALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMR 162
             L ++                +  +    +G+   + + P+    SGG+K+   I +  
Sbjct: 59  FGLRDKE------------ADARAEEALERVGLPDFLDRSPVG-TLSGGQKQRVAIARAL 105

Query: 163 LLEPSLCILDE 173
           L +P L +LDE
Sbjct: 106 LKKPKLLLLDE 116


>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
           [Coenzyme metabolism].
          Length = 231

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 16/211 (7%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
            +L V   E+VAI+GP+G+GKSTL  L++G +     +G+IL  G         ER    
Sbjct: 18  FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE--TPASGEILINGVDHTASPPAERP--- 72

Query: 82  IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
           + + FQ       + + Q + + L+   K   E+         KV    A++G+   + +
Sbjct: 73  VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQR-------EKVEAAAAQVGLAGFLKR 125

Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSF 200
            P  L  SGG+++   + +  + E  + +LDE  S LD          V+ L  +   + 
Sbjct: 126 LPGEL--SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183

Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           L++TH+      I    +  L NG+I   G 
Sbjct: 184 LMVTHHPEDAARIADRVV-FLDNGRIAAQGS 213


>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter
           subfamily is involved in extracellular polysaccharide
           export.  Among the variety of membrane-linked or
           extracellular polysaccharides excreted by bacteria, only
           capsular polysaccharides, lipopolysaccharides, and
           teichoic acids have been shown to be exported by ABC
           transporters.  A typical system is made of a conserved
           integral membrane and an ABC.  In addition to these
           proteins, capsular polysaccharide exporter systems
           require two 'accessory' proteins to perform their
           function: a periplasmic (E.coli) or a lipid-anchored
           outer membrane protein called OMA (Neisseria
           meningitidis and Haemophilus influenzae) and a
           cytoplasmic membrane protein MPA2..
          Length = 224

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 39/220 (17%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            ++ ++ +V   E + ++G NG+GKSTL  LL+G   Y   +G +  +G          R
Sbjct: 37  ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRG----------R 84

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
            S  + L   +  E+ G   +      L   RK  +EK   I +F        +ELG   
Sbjct: 85  VSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF--------SELG--- 133

Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRL-------LEPSLCILDETDSGLDIDALKIAAQGV 190
           D +  P+   +S G       ++ RL       LEP + ++DE  +  D    +   + +
Sbjct: 134 DFIDLPVK-TYSSG-------MKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL 185

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             L  Q ++ ++++H    +  +  D   VL  GKI   G
Sbjct: 186 RELLKQGKTVILVSHDPSSIKRL-CDRALVLEKGKIRFDG 224


>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
           component [Coenzyme metabolism].
          Length = 248

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 30/218 (13%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
           L+ +V   E++ ++GPNG+GKSTL   ++G        G I + G+ +  WS  E A   
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS---GSIQFAGQPLEAWSATELARHR 74

Query: 82  IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
            +L+ Q   + P   M  +  + L++  K R          T  +  +   L ++ D L 
Sbjct: 75  AYLSQQ---QTPPFAMPVWHYLTLHQPDKTR----------TELLNDVAGALALD-DKLG 120

Query: 142 RPLNLGFSGGE----KKIAEILQMR-LLEPS--LCILDETDSGLDIDALKIAAQGVNALR 194
           R  N   SGGE    +  A +LQ+     P+  L +LDE  + LD+       + ++AL 
Sbjct: 121 RSTN-QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179

Query: 195 SQDRSFLIITHYQRLLNYI--KPDTIHVLHNGKIIKTG 230
            Q  + ++ +H    LN+         +L  GK++ +G
Sbjct: 180 QQGLAIVMSSHD---LNHTLRHAHRAWLLKRGKLLASG 214


>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
           transporter and the ATPase component of a molybdate
           transport system that also includes the periplasmic
           binding protein ModA and the membrane protein ModB. ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds,
           like sugars, ions, peptides and more complex organic
           molecules. The nucleotide binding domain shows the
           highest similarity between all members of the family.
           ABC transporters are a subset of nucleotide hydrolases
           that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 214

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 25/217 (11%)

Query: 22  LNLKVE-PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI---VER 77
           L +  +   EV  I G +G+GKSTL   ++G +  +   G I+  G  + D      +  
Sbjct: 15  LKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLE--KPDGGTIVLNGTVLFDSRKKINLPP 72

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
             + I L FQ     P + + + L   L  +RK   E  +        V ++   LG+  
Sbjct: 73  QQRKIGLVFQQYALFPHLNVRENLAFGL--KRKRNREDRIS-------VDELLDLLGL-- 121

Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
           D L        SGGEK+   + +    +P L +LDE  S LD  AL++       L+   
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLL--PELKQIK 178

Query: 198 RSF----LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           ++     + +TH      Y+  D I V+ +G++   G
Sbjct: 179 KNLNIPVIFVTHDLSEAEYLA-DRIVVMEDGRLQYIG 214


>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminus, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resistance lung cancer cell in
           which p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 221

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 18/232 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E KN+  +       +++ ++  ++P E V I+G  GSGKS+L  LL+  +  E+++G 
Sbjct: 3   IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGS 60

Query: 62  ILYKGESILDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           IL  G  I    + + R+   I    Q PV   G I          +     +++EL   
Sbjct: 61  ILIDGVDISKIGLHDLRSRISIIP--QDPVLFSGTIRSNL------DPFGEYSDEELWQA 112

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
                +++    L   +D +        S G++++  + +  L +  + +LDE  + +D 
Sbjct: 113 LERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172

Query: 181 DALKIAAQGVNALRSQ--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +   +  +    +R    D + L I H  RL   I  D I VL  G++++  
Sbjct: 173 ETDALIQK---TIREAFKDCTVLTIAH--RLDTIIDSDRILVLDKGRVVEFD 219


>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
           with duplicated ATPase domains/Translation elongation
           factor EF-3b [Amino acid transport and metabolism,
           Translation, ribosomal structure and biogenesis].
          Length = 582

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 33/220 (15%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHKDYEITAGDILYKGESILDWSIV 75
            ++   NL +       ++G NG GKSTL   + +G            +          V
Sbjct: 94  ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV-------SGFH----------V 136

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           E+  +G        V       + F  +A  ++  A    E +         KI A LG 
Sbjct: 137 EQEVRGDDTEALQSVLESDTERLDF--LAEEKELLAGLTLEEIY-------DKILAGLGF 187

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195
             +M  +P     SGG +    + +    +P L +LDE  + LD+ A+   A   N L++
Sbjct: 188 TPEMQLQPTK-SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV---AWLENYLQT 243

Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK-TGDYSI 234
              + LI++H +  LN +  D IH L N K+    G+YS 
Sbjct: 244 WKITSLIVSHDRNFLNTVCTDIIH-LENLKLDYYKGNYSQ 282



 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 32/210 (15%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
             + L L  E    ++ +G NG GKSTL  +L G  D   T G +              R
Sbjct: 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKG--DLTPTRGIV----------GRHPR 426

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK-VRKITAELGIN 136
                F   Q+ V+        FL   +N    A +  E   P  T + +R+     G++
Sbjct: 427 LRIKYF--AQHHVD--------FLDKNVN----AVDFMEKSFPGKTEEEIRRHLGSFGLS 472

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            ++  + +    SGG+K            P L +LDE  + LD D+L   A+ +      
Sbjct: 473 GELALQSIA-SLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG- 530

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
               ++++H +  ++ +  + + V+ +GK+
Sbjct: 531 --GVVLVSHDEEFISSLCKE-LWVVEDGKV 557


>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
           carbohydrate uptake proteins that transport only
           monosaccharides (Monos).  The Carb_Monos family is
           involved in the uptake of monosaccharides, such as
           pentoses (such as xylose, arabinose, and ribose) and
           hexoses (such as xylose, arabinose, and ribose), that
           cannot be broken down to simple sugars by hydrolysis.
           In members of Carb_Monos family the single hydrophobic
           gene product forms a homodimer, while the ABC protein
           represents a fusion of two nucleotide-binding domains.
           However, it is assumed that two copies of the ABC
           domains are present in the assembled transporter..
          Length = 182

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 49/227 (21%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE++ L  K        +R ++ +V   E+V I G  G+G++ L+  L G +     +G
Sbjct: 4   VLEVRGLSVKGA------VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR--PPASG 55

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +I   G+ +   S  +    GI         +P             E RK    +E L+ 
Sbjct: 56  EITLDGKPVTRRSPRDAIRAGIAY-------VP-------------EDRK----REGLVL 91

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           D +         +  N+      L+   SGG ++   + +    +P + ILDE   G+D+
Sbjct: 92  DLS---------VAENIA-----LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137

Query: 181 DALKIAAQGVNALRSQDRSFLII-THYQRLLNYIKPDTIHVLHNGKI 226
            A     + +  L    ++ L+I +    LL     D I V++ G+I
Sbjct: 138 GAKAEIYRLIRELADAGKAVLLISSELDELLG--LCDRILVMYEGRI 182


>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
           resistance, nodulation, lipid transport, and bacteriocin
           and lantibiotic immunity.  In eubacteria and archaea,
           the typical organization consists of one ABC and one or
           two IMs.  Eukaryote systems of the ABCA subfamily
           display ABC domains strongly similar to this family.
           ABC transporters are a large family of proteins involved
           in the transport of a wide variety of different
           compounds, like sugars, ions, peptides and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region in addition to the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 210

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 49/230 (21%), Positives = 104/230 (45%), Gaps = 21/230 (9%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE++N+  +        +  ++  VE  E+  ++GPNG+GK+T   ++ G       +G+
Sbjct: 1   LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGE 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-KELLIP 120
           +L+ G+  LD +   R          Y  E  G+    + K+ + +Q     + K L   
Sbjct: 57  VLFDGKP-LDIAARNR--------IGYLPEERGL----YPKMKVIDQLVYLAQLKGLKKE 103

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           +  R++ +    L +  +   + +    S G ++  + +   + +P L ILDE  SGLD 
Sbjct: 104 EARRRIDEWLERLEL-SEYANKRVE-ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             +++    +  L    ++ ++ TH   L+  +  D + +L+ G+ +  G
Sbjct: 162 VNVELLKDVIRELARAGKTVILSTHQMELVEEL-CDRVLLLNKGRAVLYG 210


>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
           ATPase component of a bacterial ABC-type Na+ transport
           system called NatAB, which catalyzes ATP-dependent
           electrogenic Na+ extrusion without mechanically coupled
           to proton or K+ uptake.  NatB possess six putative
           membrane spanning regions at its C-terminus.  In B.
           subtilis, NatAB is inducible by agents such as ethanol
           and protonophores, which lower the protonmotive force
           across the membrane.  The closest sequence similarity to
           NatA is exhibited by DrrA of the two-component
           daunomycin- and doxorubicin-efflux system.  Hence, the
           functional NatAB is presumably assembled with two copies
           of the single ATP-binding protein and the single
           intergral membrane protein..
          Length = 236

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 21/199 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           + E ++G++  +E  E+V  +GPNG+GK+T   +LSG    + T+G++   G  ++ W  
Sbjct: 33  EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAG--LVPWKR 88

Query: 75  VERASKGIFLAF----QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
            ++  + I + F    Q   ++P I     L  A+ +   AR         F +++ +++
Sbjct: 89  RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA-AIYDLPPAR---------FKKRLDELS 138

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA-LKIAAQG 189
             L +  ++L  P+    S G++  AEI    L EP +  LDE   GLD+ A   I    
Sbjct: 139 ELLDLE-ELLDTPVR-QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196

Query: 190 VNALRSQDRSFLIITHYQR 208
               R +  + L+ +HY +
Sbjct: 197 KEYNRERGTTVLLTSHYMK 215


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
          component of the protease secretion system PrtD, a
          60-kDa integral membrane protein sharing 37% identity
          with HlyB, the ABC component of the alpha-hemolysin
          secretion pathway, in the C-terminal domain.  They
          export degradative enzymes by using a type I protein
          secretion system and  lack an N-terminal signal
          peptide, but contain a C-terminal secretion signal.
          The Type I secretion apparatus is made up of three
          components, an ABC transporter, a membrane fusion
          protein (MFP), and an outer membrane protein (OMP).
          For the HlyA transporter complex, HlyB (ABC
          transporter) and HlyD (MFP) reside in the inner
          membrane of E. coli.  The OMP component is TolC, which
          is thought to interact with the MFP to form a
          continuous channel across the periplasm from the
          cytoplasm to the exterior.  HlyB belongs to the family
          of ABC transporters, which are ubiquitous,
          ATP-dependent transmembrane pumps or channels.  The
          spectrum of transport substrates ranges from inorganic
          ions, nutrients such as amino acids, sugars, or
          peptides, hydrophobic drugs, to large polypeptides,
          such as HlyA..
          Length = 173

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
          LE++N+  +    +  ++R ++  +EP E +AI+GP+GSGKSTL+ L+ G      T+G 
Sbjct: 1  LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGR 58

Query: 62 ILYKGESILDW 72
          +   G  I  W
Sbjct: 59 VRLDGADISQW 69



 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 148 FSGGEKKIAEILQMRLL--EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205
            SGG+++   +   R L   P + +LDE +S LD++  +   Q + AL++   + ++I H
Sbjct: 97  LSGGQRQ--RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154

Query: 206 YQRLLNYIKPDTIHVLHNGKI 226
               L     D I VL +G++
Sbjct: 155 RPETLASA--DRILVLEDGRV 173


>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
           superfamily) [Translation, ribosomal structure and
           biogenesis].
          Length = 807

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 125 KVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK 184
           + R+I A LG + +M +RP    FSGG +    + +   LEP+L +LDE  + LD++A+ 
Sbjct: 391 RARRILAGLGFSKEMQERPTT-KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449

Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYA 244
                 N L+   ++ LI++H Q  L+ +  D IH+ +       G+Y++   +      
Sbjct: 450 WLD---NYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQ 506

Query: 245 ELIKE 249
           E  K 
Sbjct: 507 EHEKN 511



 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 30/193 (15%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           + + L+  ++    +AI+GPNG GKSTL  LL G    ++   D   +    L     ++
Sbjct: 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG----KLDPNDGELRKNHRLRIGWFDQ 657

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
            +       + PVE     + +   +   E RK      L     T K++ +        
Sbjct: 658 HANEALNGEETPVEY----LQRKFNLPYQEARKQLGTFGLASHAHTIKIKDL-------- 705

Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
                      SGG+K    + ++ L  P + ILDE  + LDI+++   A+ +N      
Sbjct: 706 -----------SGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG-- 752

Query: 198 RSFLIITHYQRLL 210
              ++++H +RL+
Sbjct: 753 -GVIMVSHDERLI 764


>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
           family of ATP-binding cassette (ABC) transporters.  PDR
           is a well-described phenomenon occurring in fungi and
           shares several similarities with processes in bacteria
           and higher eukaryotes.  This PDR subfamily represents
           domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide-binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 202

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 38/218 (17%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD-YEITAGDILYKGESILDWSI 74
             I++  +  V+P E+V ++G  GSG STL   L+   +      GDI Y G    +   
Sbjct: 20  IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE--F 77

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
            E+    I    +  V  P + + + L  AL    + +        +F R          
Sbjct: 78  AEKYPGEIIYVSEEDVHFPTLTVRETLDFAL----RCKGN------EFVR---------- 117

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNAL 193
                       G SGGE+K   I +  +   S+   D +  GLD   AL+I  + +  +
Sbjct: 118 ------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTM 164

Query: 194 RSQDRSFLIITHYQRLLN-YIKPDTIHVLHNGKIIKTG 230
               ++   ++ YQ     Y   D + VL+ G+ I  G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202


>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
           ATPase components [Amino acid transport and metabolism].
          Length = 309

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 13/206 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+E +N+  +    + + +  +NL +E  E + ++GP+GSGK+T   +++     E T+G
Sbjct: 1   MIEFENVSKR--YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSG 56

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           +IL  GE I D   VE   + I    Q     P + + +   IA   +    +++ +   
Sbjct: 57  EILIDGEDISDLDPVE-LRRKIGYVIQQIGLFPHLTVAE--NIATVPKLLGWDKERI--- 110

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD- 179
              ++  ++   +G++            SGG+++   + +    +P + ++DE    LD 
Sbjct: 111 --KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168

Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205
           I   ++  +     +   ++ + +TH
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTH 194


>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 325

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 28/225 (12%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
           E ++ ++ ++   E+V  +G NG+GKST   +L+G                 +     V 
Sbjct: 38  EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG---------------LLLPTSGKVR 82

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKI--ALNEQRKARNEKELL-IPD--FTRKVRKITA 131
              K  F   +  +   G++M Q L++   L         K +  IPD  F  ++  +T 
Sbjct: 83  VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142

Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI---DALKIAAQ 188
            L +    LK P+    S G++  AE+    L  P +  LDE   GLD+     ++   +
Sbjct: 143 ILDLE-GFLKWPVR-KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200

Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYS 233
             N  R    + L+ TH    +  +  D + ++  G+++  G  +
Sbjct: 201 EYNEERQA--TVLLTTHIFDDIATL-CDRVLLIDQGQLVFDGTLA 242


>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
           [Inorganic ion transport and metabolism].
          Length = 259

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ML + +L           +  ++L +   E+V ++GP+G GK+TL  L++G         
Sbjct: 3   MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---- 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
               +G   L+   +E       + FQ    +P + ++  +   L  +   + ++     
Sbjct: 59  ----RGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR----- 109

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
                  ++ A +G+     K    L  SGG ++   I +   +EP L +LDE    L  
Sbjct: 110 --REIAHQMLALVGLEGAEHKYIWQL--SGGMRQRVGIARALAVEPQLLLLDEPFGAL-- 163

Query: 181 DAL---KIAAQGVNALRSQDRSFLIITH 205
           DAL   ++    ++  +   +  L+ITH
Sbjct: 164 DALTREQMQELLLDLWQETGKQVLLITH 191


>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
           biogenesis, ATPase component [Posttranslational
           modification, protein turnover, chaperones].
          Length = 209

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 18/179 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE +NL  +    +  +   L+  +   E + I GPNG+GK+TL  +L+G       AG
Sbjct: 2   MLEAENLSCE--RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAG 57

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
           ++ ++GE I      +   +    A  Y    PGI      K  L         +     
Sbjct: 58  EVYWQGEPI------QNVRESYHQALLYLGHQPGI------KTELTALENLHFWQRFHGS 105

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
                + +  A++G+   +   P+    S G+++   + ++ L    L ILDE  + LD
Sbjct: 106 GNAATIWEALAQVGL-AGLEDLPVG-QLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
           nucleotide-binding protein that binds FtsX to form a
           heterodimeric ATP-binding cassette (ABC)-type
           transporter that associates with the bacterial inner
           membrane.  The FtsE/X transporter is thought to be
           involved in cell division and is important for assembly
           or stability of the septal ring..
          Length = 214

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 14/214 (6%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDW 72
            T  + G+N+ +   E V ++GP+G+GKSTL  L+  +K+   T+G I   G+ +  L  
Sbjct: 13  GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLI--YKEELPTSGTIRVNGQDVSDLRG 70

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
             +    + I + FQ    +P   + + +  AL        E         ++V      
Sbjct: 71  RAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPRE-------IRKRVPAALEL 123

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
           +G++     R L    SGGE++   I +  +  P++ I DE    LD D        +  
Sbjct: 124 VGLSHK--HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181

Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           +     + ++ TH + L++  +   I  L  GK+
Sbjct: 182 INKAGTTVVVATHAKELVDTTRHRVI-ALERGKL 214


>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
            protein/mitoxantrone resistance protein, ABC superfamily
            [Secondary metabolites biosynthesis, transport and
            catabolism].
          Length = 1381

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 57/258 (22%), Positives = 115/258 (44%), Gaps = 32/258 (12%)

Query: 2    LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
            +E ++L  +       +++G++  ++P E V I+G  G+GKS+L   L   +  E   G+
Sbjct: 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL--FRLVEPAEGE 1196

Query: 62   ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMM------QFLKIALNEQRKARNEK 115
            IL  G  I    + +  S+ + +  Q PV   G +        ++    + E  +    K
Sbjct: 1197 ILIDGVDISKIGLHDLRSR-LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255

Query: 116  ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
            + ++      +    +E G N           FS G++++  + +  L +  + +LDE  
Sbjct: 1256 D-VVSSLPGGLDSEVSEGGEN-----------FSVGQRQLLCLARALLRKSKILVLDEAT 1303

Query: 176  SGLD--IDALKIAAQGVNALRSQ--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            + +D   DAL    Q    +R +  D + L I H  RL   +  D + VL  G++++   
Sbjct: 1304 ASVDPETDAL---IQ--KTIREEFKDCTVLTIAH--RLNTVMDSDRVLVLDAGRVVEFDS 1356

Query: 232  YSIALDLEENGYAELIKE 249
             +  L  +++ ++ L+KE
Sbjct: 1357 PAELLSDKDSLFSSLLKE 1374



 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 57/254 (22%), Positives = 105/254 (41%), Gaps = 59/254 (23%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYK 65
           ++    ++ +N +++  ++VA++GP GSGKS+L          LSG        G + Y 
Sbjct: 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV---AVNGSVAYV 587

Query: 66  GES--ILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN-EKELLIPD- 121
            +   I + ++ E       + F  P                +E+R  +  +   L  D 
Sbjct: 588 PQQPWIQNGTVREN------ILFGSP---------------YDEERYDKVIKACALKKDL 626

Query: 122 --FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSG 177
                       E GIN+           SGG+K    I   R +  +  + +LD+  S 
Sbjct: 627 EILPFGDLTEIGERGINL-----------SGGQK--QRISLARAVYQDADIYLLDDPLSA 673

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237
           +D    K   +       + ++ +++TH  + L +   D I VL +GKI+++G Y    +
Sbjct: 674 VDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHA--DQIIVLKDGKIVESGTYE---E 728

Query: 238 LEENG--YAELIKE 249
           L ++G  +AEL  E
Sbjct: 729 LLKSGGDFAELAHE 742


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE+ N R ++ +   +     N  +    + A+ GP+GSGK++L  +++G     +T  
Sbjct: 1   MLEL-NFRQRLGNFALDA----NFTLPARGITALFGPSGSGKTSLINMIAG-----LTRP 50

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLI 119
           D   +G   L+  ++  A KGIFL    P E   I  + F    L      R N +  + 
Sbjct: 51  D---EGRIELNGRVLVDAEKGIFL----PPEKRRIGYV-FQDARLFPHYTVRGNLRYGMW 102

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
                +  ++ A LGI   + + P  L  SGGEK+   I +  L  P L ++DE  + LD
Sbjct: 103 KSMRAQFDQLVALLGIEHLLDRYPGTL--SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160

Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH-NGKIIKTGDYSIALD 237
           +                 R   I+ + +RL + I    ++V H   ++++  D  + L+
Sbjct: 161 L----------------PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLE 203


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 223

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+  +N+ +K      E +R ++  +   E V + GP+G+GKSTL  L+ G  +   T G
Sbjct: 1   MIRFENV-SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRG 57

Query: 61  DILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
            IL  G  +  L    +    + I + FQ    +P   + + + + L    K   E    
Sbjct: 58  KILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
           + +    V      L      L  P  L  SGGE++   I +  + +P++ + DE    L
Sbjct: 118 VSEVLDLVG-----LKHKARAL--PSQL--SGGEQQRVAIARAIVNQPAVLLADEPTGNL 168

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
           D D      +    +     + L+ TH   L+N ++   +  L +G++++
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA-LEDGRLVR 217


>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea.  This transport system
           belong to the larger ATP-Binding Cassette (ABC)
           transporter superfamily.  The characteristic feature of
           these transporters is the obligatory coupling of ATP
           hydrolysis to substrate translocation.  ABC transporters
           are a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition to, the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 269

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 18/217 (8%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IV 75
           +  ++L V   E+  IMG +GSGKSTL   ++     E T+G +L  G+ I   S   + 
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELR 97

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           E   K I + FQ    +P   +++ +   L  Q   R E+E        +  +    +G+
Sbjct: 98  ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-------ERAAEALELVGL 150

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALR 194
                K P  L  SGG ++   + +   ++P + ++DE  S LD +   ++  + +    
Sbjct: 151 EGWEHKYPDEL--SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208

Query: 195 SQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
              ++ + ITH   L   ++  D I ++ +G++++ G
Sbjct: 209 ELQKTIVFITH--DLDEALRLGDRIAIMKDGRLVQVG 243


>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 252

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 50/235 (21%), Positives = 105/235 (44%), Gaps = 22/235 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+ I+N+          ++  ++L +    + +I+GPNG+GKSTL  ++S  +  +  +G
Sbjct: 1   MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSG 56

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGII--MMQFLKIALNEQRKARNEKELL 118
           +I   G  +      E A K   L  +  +     +  ++ F +   ++ R  + ++   
Sbjct: 57  EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR--- 113

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
                R + +    L +  D+  R L+   SGG+++ A I  +   +    +LDE  + L
Sbjct: 114 -----RIINEAIEYLHL-EDLSDRYLD-ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166

Query: 179 DI-DALKIAAQGVNALRSQDRSFLIITHYQRLLNY--IKPDTIHVLHNGKIIKTG 230
           D+  +++I            ++ +++ H    +N+     D I  L NGK++K G
Sbjct: 167 DMKHSVQIMKILRRLADELGKTIVVVLHD---INFASCYSDHIVALKNGKVVKQG 218


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
           ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IV 75
           +   +L VE  E+  IMG +GSGKSTL  LL+     E T G+IL  G+ I   S   + 
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEPTRGEILVDGKDIAKLSAAELR 101

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           E   K I + FQ    +P   +++ +   L  Q   + E+E        +  +    +G+
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAERE-------ERALEALELVGL 154

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
                K P  L  SGG ++   + +    +P + ++DE  S LD
Sbjct: 155 EGYADKYPNEL--SGGMQQRVGLARALANDPDILLMDEAFSALD 196


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK-GESILD----- 71
           ++R ++L V   E V + GP+GSGKSTL   L    +Y    G IL +     +D     
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA--NYLPDEGQILVRHEGEWVDLVTAE 83

Query: 72  -WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
              ++E     I    Q+   IP +  +  +   L  +   R            K   + 
Sbjct: 84  PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARA-------KAADLL 136

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
             L +   +        FSGGE++   I +  +++  + +LDE  + LD     +  + +
Sbjct: 137 TRLNLPERLWSLAPAT-FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195

Query: 191 NALRSQDRSFLIITH 205
              +++  + + I H
Sbjct: 196 REAKARGAALVGIFH 210


>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
           implicated in the metabolism of DNA ends. They cleave
           ends sealed by hairpin structures and are thought to
           play a role in removing protein bound to DNA termini..
          Length = 213

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 47/202 (23%)

Query: 25  KVEPSEVVAIMGPNGSGKSTL----SYLLSGH---KDYEITAGDILYKGESILDWSIVER 77
            ++ + +  I GP G+GKST+    +Y L G       +     +   GE   + S   +
Sbjct: 24  GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQ 83

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
                +   +      G+   QF +I L  Q +                           
Sbjct: 84  LGGKKYRVERSR----GLDYDQFTRIVLLPQGEFD------------------------- 114

Query: 138 DMLKRPLNLGFSGGEKKIA---------EILQMRLLEP-SLCILDETDSGLDIDALKIAA 187
             L RP++   SGGE  +A         E+LQ R         +DE    LD +AL+  A
Sbjct: 115 RFLARPVS-TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA 173

Query: 188 QGVNALRSQDRSFLIITHYQRL 209
             +  +R+++R   +I+H + L
Sbjct: 174 TALELIRTENRMVGVISHVEEL 195


>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 258

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)

Query: 20  RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY--KGESILDWSIVER 77
           R ++  + P EV+ I+G +GSGK+TL   +SG       AG + Y  +     D   +  
Sbjct: 23  RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTMSE 80

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAELGIN 136
           A +   L  ++        + Q  +  L  Q  A  N  E L+    R    I AE    
Sbjct: 81  AERRRLLRTEWG------FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDW 134

Query: 137 MDMLKRPLN------LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
           ++ ++  L+        FSGG ++  +I +  +  P L  +DE   GLD+    + A+ +
Sbjct: 135 LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLL 191

Query: 191 NALRSQDRSF----LIITH---YQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243
           + LR   R      +I+TH     RLL     D + V+  G+++++G     LD   + Y
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLA----DRLMVMKQGQVVESGLTDRVLDDPHHPY 247

Query: 244 AELI 247
            +L+
Sbjct: 248 TQLL 251


>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
           component [General function prediction only].
          Length = 300

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 49/238 (20%), Positives = 99/238 (41%), Gaps = 33/238 (13%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            LEI+ +       D + +  ++ +V P E+  ++GPNG+GK+T   ++ G    E T G
Sbjct: 2   ALEIEGVTKSF--GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEG 57

Query: 61  DILYKGESILDWSIVERASKGIFLAFQ---YPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
           +I + G  +    I  R     +L  +   YP       +    ++    + + + + + 
Sbjct: 58  EITWNGGPL-SQEIKNRIG---YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA 113

Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
            +        +I  +    +  L +       G ++KI  I  + + EP L ILDE  SG
Sbjct: 114 WLERL-----EIVGKKTKKIKELSK-------GNQQKIQFISAV-IHEPELLILDEPFSG 160

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKIIKTGD 231
           LD   +++    +  L+ +  + +  +H     + L      D + +L  G+ +  G 
Sbjct: 161 LDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC-----DRLLMLKKGQTVLYGT 213


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
           L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI),
           is a key enzyme in ribosomal biogenesis, formation of
           translation preinitiation complexes, and assembly of HIV
           capsids.  RLI s are not transport proteins and thus
           cluster with a group of soluble proteins that lack the
           transmembrane components commonly found in other members
           of the family.  Structurally, RLIs have an N-terminal
           Fe-S domain and two nucleotide binding domains which are
           arranged to form two composite active sites in their
           interface cleft.  RLI is one of the most conserved
           enzymes between archaea and eukaryotes with a sequence
           identity more than 48%.  The high degree of evolutionary
           conservation suggests that RLI performs a central role
           in archaeal and eukaryotic physiology..
          Length = 255

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 14/201 (6%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG---- 81
               +V+ ++GPNG GKST   +L+G    ++     L K +   DW  +    +G    
Sbjct: 23  PREGQVLGLVGPNGIGKSTALKILAG----KLKPN--LGKFDDPPDWDEILDEFRGSELQ 76

Query: 82  IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
            +       ++  I+  Q++ + + +  K +  + L   D   K+ ++  +L +   +L 
Sbjct: 77  NYFTKLLEGDVKVIVKPQYVDL-IPKAVKGKVGELLKKKDERGKLDELVDQLELR-HVLD 134

Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFL 201
           R ++   SGGE +   I      +      DE  S LDI     AA+ +  L   D   L
Sbjct: 135 RNID-QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVL 193

Query: 202 IITHYQRLLNYIKPDTIHVLH 222
           ++ H   +L+Y+  D IH L+
Sbjct: 194 VVEHDLAVLDYLS-DYIHCLY 213


>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
           (PDR) family of ATP-binding cassette (ABC) transporters.
           PDR is a well-described phenomenon occurring in fungi
           and shares several similarities with processes in
           bacteria and higher eukaryotes.  This PDR subfamily
           represents domain I of its (ABC-IM)2 organization.  ABC
           transporters are a large family of proteins involved in
           the transport of a wide variety of different compounds
           including sugars, ions, peptides, and more complex
           organic molecules.  The nucleotide binding domain shows
           the highest similarity between all members of the
           family.  ABC transporters are a subset of nucleotide
           hydrolases that contain a signature motif, Q-loop, and
           H-loop/switch region, in addition to, the Walker A
           motif/P-loop and Walker B motif commonly found in a
           number of ATP- and GTP-binding and hydrolyzing
           proteins..
          Length = 192

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 45/222 (20%)

Query: 5   KNLRAKIVD--TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
           KNL   +       +++  ++  V+P  + A+MG +G+GK+TL  +L+G K   +  G+I
Sbjct: 7   KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66

Query: 63  LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF 122
           L  G       + +   +      Q  V  P + + + L+                   F
Sbjct: 67  LINGR-----PLDKNFQRSTGYVEQQDVHSPNLTVREALR-------------------F 102

Query: 123 TRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182
           +  +R ++ E                   ++K   I      +PS+  LDE  SGLD  A
Sbjct: 103 SALLRGLSVE-------------------QRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143

Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224
                + +  L    ++ L   H      + K D + +L  G
Sbjct: 144 AYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185


>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3  Elongation factor 3 (EF-3) is a
           cytosolic protein required by fungal ribosomes for in
           vitro protein synthesis and for in vivo growth.  EF-3
           stimulates the binding of the EF-1: GTP: aa-tRNA ternary
           complex to the ribosomal A site by facilitated release
           of the deacylated tRNA from the E site.  The reaction
           requires ATP hydrolysis.  EF-3 contains two ATP
           nucleotide binding sequence (NBS) motifs.  NBSI is
           sufficient for the intrinsic ATPase activity. NBSII is
           essential for the ribosome-stimulated functions..
          Length = 144

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
            SGGEK    + ++ L  P+L +LDE  + LD+++++       AL+    + ++++H +
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE---EALKEYPGTVILVSHDR 127

Query: 208 RLLNYIKPDTIHVLHNGK 225
             L+ +    I  L +GK
Sbjct: 128 YFLDQVATKIIE-LEDGK 144



 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
          +E++NL          +++ ++L + P + + ++G NG+GKSTL  L++G  + E   G 
Sbjct: 1  IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG--ELEPDEGI 56

Query: 62 I 62
          +
Sbjct: 57 V 57


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 38/213 (17%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG---- 81
             P +VV I+GPNG GKST   +L+G    E+     L + E    W  V +  +G    
Sbjct: 97  PRPGKVVGILGPNGIGKSTALKILAG----ELKPN--LGRYEDPPSWDEVIKRFRGTELQ 150

Query: 82  ------------IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
                            QY   IP     + +K  + E  K  +E+         K  ++
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIP-----KVVKGKVGELLKKVDERG--------KFDEV 197

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
              LG+  ++L R ++   SGGE +   I    L +  +   DE  S LDI     AA+ 
Sbjct: 198 VERLGLE-NVLDRDVS-ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH 222
           +  L    +  +++ H   +L+Y+  D +H+L+
Sbjct: 256 IRELAEDGKYVIVVEHDLAVLDYLS-DFVHILY 287



 Score = 37.9 bits (88), Expect = 0.003
 Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 42/202 (20%)

Query: 21  GLNLKVEP-----SEVVAIMGPNGSGKSTLSYLLSGH-KDYEITAGD--ILYKGESILDW 72
              L+VE       EV+ I+GPNG GK+T   LL+G  K  E +  D  + YK + I   
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP- 412

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
                             +  G +         +    +  + E++ P            
Sbjct: 413 ------------------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKP------------ 442

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
           L +  D+L+RP++   SGGE +   I      E  L +LDE  + LD++   I A+ +  
Sbjct: 443 LNLE-DLLERPVD-ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500

Query: 193 L-RSQDRSFLIITHYQRLLNYI 213
              + +++ L++ H   +++Y+
Sbjct: 501 FIENNEKTALVVDHDIYMIDYV 522


>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
           component of a bacterial solute transporter that serves
           a protective role to cells growing in a hyperosmolar
           environment.  ABC (ATP-binding cassette) transporter
           nucleotide-binding domain; ABC transporters are a large
           family of proteins involved in the transport of a wide
           variety of different compounds, like sugars, ions,
           peptides, and more complex organic molecules.  The
           nucleotide binding domain shows the highest similarity
           between all members of the family.  ABC transporters are
           a subset of nucleotide hydrolases that contain a
           signature motif, Q-loop, and H-loop/switch region, in
           addition, to the Walker A motif/P-loop and Walker B
           motif commonly found in a number of ATP- and GTP-binding
           and hydrolyzing proteins..
          Length = 242

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 44/214 (20%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  LNL++   E + ++GP+GSGK+T   +++  +  E T+G+I   GE I +   VE  
Sbjct: 17  VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN--RLIEPTSGEIFIDGEDIREQDPVELR 74

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
            K I    Q     P + + + + +     +  + +          +  ++ A +G++  
Sbjct: 75  RK-IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-------ERADELLALVGLDPA 126

Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRSQD 197
                     SGG+++   + +    +P L ++DE    LD I   ++  +     +   
Sbjct: 127 EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186

Query: 198 RSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
           ++ + +TH   +    +  D I ++ NG+I++ G
Sbjct: 187 KTIVFVTH--DIDEAFRLADRIAIMKNGEIVQVG 218


>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
           transporter 1).  NFT1 belongs to the MRP (mulrtidrug
           resisitance-associated protein) family of ABC
           transporters.  Some of the MRP members have five
           additional transmembrane segments in their N-terminas,
           but the function of these additional membrane-spanning
           domains is not clear.  The MRP was found in the
           multidrug-resisting lung cancer cell in which
           p-glycoprotein was not overexpressed.  MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions such as
           glutathione, glucuronate, and sulfate..
          Length = 207

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 34/231 (14%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++NL  +       +++ ++ KV+  E + I+G  G+GKSTL  +L+  +  E   G 
Sbjct: 7   IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGK 64

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   G  I    + E     + +  Q P      +    ++  L+   +  +E+      
Sbjct: 65  IEIDGIDISTIPL-EDLRSSLTIIPQDPT-----LFSGTIRSNLDPFDEYSDEE------ 112

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI- 180
                 +++ E G+N            S G++++  + +  L  P + +LDE  + +D  
Sbjct: 113 -IYGALRVS-EGGLN-----------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159

Query: 181 -DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            DAL    Q        + + L I H  RL   I  D I V+  G++ +  
Sbjct: 160 TDAL---IQKTIREEFTNSTILTIAH--RLRTIIDYDKILVMDAGEVKEYD 205


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
           the bacterial CcmAB transporter.  The CCM family is
           involved in bacterial cytochrome c biogenesis.
           Cytochrome c maturation in E. coli requires the ccm
           operon, which encodes eight membrane proteins
           (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
           that binds heme covalently and transfers it onto
           apocytochrome c in the presence of CcmF, CcmG, and CcmH.
            The CcmAB proteins represent an ABC transporter and the
           CcmCD proteins participate in heme transfer to CcmE..
          Length = 201

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           +  GL+  +   E + + GPNGSGK+TL  +L+G       AG +L  G   LD+     
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGP-LDFQRDSI 71

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF-TRKVRKITAELGIN 136
           A   ++L        PGI      K  L+              D    +V +  A +G+N
Sbjct: 72  ARGLLYLGHA-----PGI------KTTLS----VLENLRFWHADHSDEQVEEALARVGLN 116

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
                RP+    S G+++   + ++ L    L ILDE  + LD   +   A+ +    ++
Sbjct: 117 -GFEDRPVA-QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174

Query: 197 DRSFLIITH 205
               ++ TH
Sbjct: 175 GGMVVLTTH 183


>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
           protein expressed in rat epithelial cells which is
           thought to have an important regulatory role in tight
           junction barrier function.  Barmotin belongs to the SMC
           protein family.  SMC proteins are large (approximately
           110 to 170 kDa), and each is arranged into five
           recognizable domains.  Amino-acid sequence homology of
           SMC proteins between species is largely confined to the
           amino- and carboxy-terminal globular domains. The
           amino-terminal domain contains a 'Walker A'
           nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 197

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 70/201 (34%)

Query: 28  PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQ 87
           P  + AI+GPNGSGKS +                     ++I  W + E+++K +     
Sbjct: 21  PPGLTAIVGPNGSGKSNI--------------------IDAIR-WVLGEQSAKSLRGE-- 57

Query: 88  YPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPDFTR---------KVRKITAELGINM 137
                     M  +  A +E RK  N  E+ L  D +           V +I    G   
Sbjct: 58  ---------KMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEAPG--- 105

Query: 138 DMLKRPLNLG-FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNA 192
              K+   L   SGGEK    +A +  +  + PS  C+LDE D+ LD           N 
Sbjct: 106 ---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD---------DANV 153

Query: 193 LR--------SQDRSFLIITH 205
            R        S++  F++ITH
Sbjct: 154 ERFARLLKEFSKETQFIVITH 174


>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
           cellular processes other than transport.  These families
           are characterised by the fact that the ABC subunit is
           made up of duplicated, fused ABC modules (ABC2).  No
           known transmembrane proteins or domains are associated
           with these proteins..
          Length = 162

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 146 LGFSGGEK---KIAEILQMRLLEP-SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFL 201
           L  SGGEK    +A IL +  L+P  L ILDE D GLD    +  A+ +     +    +
Sbjct: 76  LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135

Query: 202 IITHYQRLLN 211
           +ITH   L  
Sbjct: 136 VITHLPELAE 145



 Score = 28.0 bits (62), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 28 PSEVVAIMGPNGSGKSTL 45
             +  I GPNGSGKST+
Sbjct: 20 EGSLTIITGPNGSGKSTI 37


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
           [Amino acid transport and metabolism].
          Length = 242

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 28/229 (12%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS-- 73
            + +  + L     E + ++GP+G+GKS+L  +L+     E+     L    +  D+S  
Sbjct: 15  HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN---LLEMPRSGTLNIAGNHFDFSKT 71

Query: 74  ----IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
                +    + + + FQ     P + + + L  A         ++ L       +  K+
Sbjct: 72  PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL------ARAEKL 125

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
              L +     + PL+L  SGG+++   I +  ++EP + + DE  + LD +   I AQ 
Sbjct: 126 LKRLRLKPYADRYPLHL--SGGQQQRVAIARALMMEPQVLLFDEPTAALDPE---ITAQI 180

Query: 190 VNALRSQDRSFL---IITHYQRLLNYIKPDTIHVLH--NGKIIKTGDYS 233
           V+ ++    + +   I+TH    +   +     V++  NG I++ GD S
Sbjct: 181 VSIIKELAETGITQVIVTHE---VEVARKTASRVVYMENGHIVEQGDAS 226


>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2.  The sulfonylurea receptor
           SUR is an ATP binding cassette (ABC) protein of the
           ABCC/MRP family.  Unlike other ABC proteins, it has no
           intrinsic transport function, neither active nor
           passive, but associates with the potassium channel
           proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
           potassium (K(ATP)) channel.  Within the channel complex,
           SUR serves as a regulatory subunit that fine-tunes the
           gating of Kir6.x in response to alterations in cellular
           metabolism.  It constitutes a major pharmaceutical
           target as it binds numerous drugs, K(ATP) channel
           openers and blockers, capable of up- or down-regulating
           channel activity..
          Length = 257

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 20/251 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           ++I +L  +  +    +++ +   ++P + V I G  GSGKS+LS  L+  +  +I  G 
Sbjct: 20  IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGK 77

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK---ELL 118
           I+  G  I    +    S+ + +  Q P+   G I     +  L+ + K  +++    L 
Sbjct: 78  IVIDGIDISKLPLHTLRSR-LSIILQDPILFSGSI-----RFNLDPECKCTDDRLWEALE 131

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
           I      V+ +   L    D +       FS G++++  + +  + + S+ I+DE  + +
Sbjct: 132 IAQLKNMVKSLPGGL----DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASI 187

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDL 238
           D+    I  Q V      DR+ + I H  R+   +  D + VL  G +++  D    L  
Sbjct: 188 DMATENI-LQKVVMTAFADRTVVTIAH--RVSTILDADLVLVLSRGILVEC-DTPENLLA 243

Query: 239 EENG-YAELIK 248
           +E+G +A L++
Sbjct: 244 QEDGVFASLVR 254


>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
           superfamily (involved in peroxisome organization and
           biogenesis) [Lipid transport and metabolism, General
           function prediction only].
          Length = 659

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 32/205 (15%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           +I  L+L+V   + + I GP+G GK++L  +L G   +  T G +             + 
Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL--WPSTGGKLTKPT---------DG 498

Query: 78  ASKGIFLAFQYPVEIPGIIMMQF---LKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
             K +F   Q P    G +  Q    LK    + + A +E  L I +  +    +  E G
Sbjct: 499 GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGG 558

Query: 135 IN-------MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
           ++       MD+L        S GE++     ++   +P   ILDE  S +  D   +  
Sbjct: 559 LDQQVDWDWMDVL--------SPGEQQRLAFARLFYHKPKFAILDECTSAVTED---VEG 607

Query: 188 QGVNALRSQDRSFLIITHYQRLLNY 212
                 R    +F+ + H + L  +
Sbjct: 608 ALYRKCREMGITFISVGHRKSLWKF 632


>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
           permease components [Secondary metabolites biosynthesis,
           transport, and catabolism / Inorganic ion transport and
           metabolism].
          Length = 546

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE++N+R    D    +   +NL ++  E+V ++G NGSGKSTL+ LL+G   Y+  +G+
Sbjct: 323 LELRNVRFAYQDNAFHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL--YQPQSGE 379

Query: 62  ILYKGESI 69
           IL  G+ +
Sbjct: 380 ILLDGKPV 387


>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
           permease and ATPase components [General function
           prediction only].
          Length = 604

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 28/214 (13%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            + ++NL  +  D  T ++  LN +V P E + I G +G+GK++L   L+G   +   +G
Sbjct: 392 GITLENLSLRTPDGQT-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SG 448

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            I    +S L           +FL  Q P    G +      +         ++ EL+  
Sbjct: 449 RISMPADSAL-----------LFLP-QRPYLPQGTLREA---LCYPNAAPDFSDAELV-- 491

Query: 121 DFTRKVRKITAELGINMDMLKR--PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
               KV      LG   + L      +   SGGE++     ++ L +P    LDE  S L
Sbjct: 492 AVLHKVG-----LGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNY 212
           D +      Q +      D + + + H   L N+
Sbjct: 547 DEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF 579


>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1.  The cystic
           fibrosis transmembrane regulator (CFTR), the product of
           the gene mutated in patients with cystic fibrosis, has
           adapted the ABC transporter structural motif to form a
           tightly regulated anion channel at the apical surface of
           many epithelia.  Use of the term assembly of a
           functional ion channel implies the coming together of
           subunits, or at least smaller not-yet functional
           components of the active whole.  In fact, on the basis
           of current knowledge only the CFTR polypeptide itself is
           required to form an ATP- and protein kinase A-dependent
           low-conductance chloride channel of the type present in
           the apical membrane of many epithelial cells.  CFTR
           displays the typical organization (IM-ABC)2 and carries
           a characteristic hydrophilic R-domain that separates
           IM1-ABC1 from IM2-ABC2..
          Length = 282

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
             +++ +NLK+E  E++AI G  GSGK++L  L+ G  + E + G I + G         
Sbjct: 50  APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG--ELEPSEGKIKHSGR-------- 99

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEK----ELLIPDFTRKVRKIT 130
                 I  + Q+   +PG I    +  ++ +E R     K    E  I  F  K   + 
Sbjct: 100 ------ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVL 153

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK-IAAQG 189
            E GI +           SGG++    + +    +  L +LD     LD+   K I    
Sbjct: 154 GEGGITL-----------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
           V  L +     L+ +  + L    K D I +LH G     G +S    L  +  ++L+
Sbjct: 203 VCKLMANKTRILVTSKMEHLK---KADKILILHEGSSYFYGTFSELQSLRPDFSSKLM 257


>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2.  The cystic
          fibrosis transmembrane regulator (CFTR), the product of
          the gene mutated in patients with cystic fibrosis, has
          adapted the ABC transporter structural motif to form a
          tightly regulated anion channel at the apical surface
          of many epithelia.  Use of the term assembly of a
          functional ion channel implies the coming together of
          subunits or at least smaller not-yet functional
          components of the active whole.  In fact, on the basis
          of current knowledge only the CFTR polypeptide itself
          is required to form an ATP- and protein kinase
          A-dependent low-conductance chloride channel of the
          type present in the apical membrane of many epithelial
          cells.  CFTR displays the typical organization
          (IM-ABC)2 and carries a characteristic hydrophilic
          R-domain that separates IM1-ABC1 from IM2-ABC2..
          Length = 275

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
          + +K+L AK  +    ++  ++  + P + V ++G  GSGKST   LLS       T GD
Sbjct: 3  MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKST---LLSAFLRLLNTEGD 59

Query: 62 ILYKGES 68
          I   G S
Sbjct: 60 IQIDGVS 66


>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C.  This
           family is also known as MRP (mulrtidrug
           resisitance-associated protein).  Some of the MRP
           members have five additional transmembrane segments in
           their N-terminas, but the function of these additional
           membrane-spanning domains is not clear.  The MRP was
           found in the multidrug-resisting lung cancer cell in
           which p-glycoprotein was not overexpressed. MRP exports
           glutathione by drug stimulation, as well as, certain
           substrates in conjugated forms with anions, such as
           glutathione, glucuronate, and sulfate..
          Length = 204

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 35/214 (16%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            ++ +NL+V   E+VAI+GP GSGKS+L   L G  + E  +G +   G           
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEKLSGSVSVPG----------- 66

Query: 78  ASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQR-KARNEKELLIPDFTRKVRKITAELG 134
               I    Q P    G I   + F K   +E+R +   +   L PD          E+G
Sbjct: 67  ---SIAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIG 122

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGLDID-ALKIAAQGVN 191
                 ++ +NL  SGG+K    I   R +  +  + +LD+  S +D      I    + 
Sbjct: 123 ------EKGINL--SGGQK--QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172

Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
            L   +++ +++TH  +LL +   D I VL NG+
Sbjct: 173 GLLLNNKTRILVTHQLQLLPHA--DQIVVLDNGR 204


>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
           transporter (Pat) is involved in the import of very
           long-chain fatty acids (VLCFA) into the peroxisome.  The
           peroxisomal membrane forms a permeability barrier for a
           wide variety of metabolites required for and formed
           during fatty acid beta-oxidation.  To communicate with
           the cytoplasm and mitochondria, peroxisomes need
           dedicated proteins to transport such hydrophilic
           molecules across their membranes.  X-linked
           adrenoleukodystrophy (X-ALD) is caused by mutations in
           the ALD gene, which encodes ALDP (adrenoleukodystrophy
           protein ), a peroxisomal integral membrane protein that
           is a member of the ATP-binding cassette (ABC)
           transporter protein family.  The disease is
           characterized by a striking and unpredictable variation
           in phenotypic expression.  Phenotypes include the
           rapidly progressive childhood cerebral form (CCALD), the
           milder adult form, adrenomyeloneuropathy (AMN), and
           variants without neurologic involvement (i.e.
           asymptomatic)..
          Length = 166

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 57/200 (28%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
                +++ L+ +++P + + I GP+G+GKS+   L                        
Sbjct: 11  PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSS---LF----------------------- 44

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
               RA  G++      + +P    + FL      QR          P            
Sbjct: 45  ----RALAGLWPWGSGRIGMPEGEDLLFLP-----QR----------PYLPL-------- 77

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
            G   + L  P +   SGGE++     ++ L +P    LDE  S LD ++     Q    
Sbjct: 78  -GTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ---L 133

Query: 193 LRSQDRSFLIITHYQRLLNY 212
           L+    + + + H   L  +
Sbjct: 134 LKELGITVISVGHRPSLWKF 153


>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
           (SMC) proteins are essential for successful chromosome
           transmission during replication and segregation of the
           genome in all organisms.  SMCs are generally present as
           single proteins in bacteria, and as at least six
           distinct proteins in eukaryotes.  The proteins range in
           size from approximately 110 to 170 kDa, and each has
           five distinct domains: amino- and carboxy-terminal
           globular domains, which contain sequences characteristic
           of ATPases, two coiled-coil regions separating the
           terminal domains , and a central flexible hinge.  SMC
           proteins function together with other proteins in a
           range of chromosomal transactions, including chromosome
           condensation, sister-chromatid cohesion, recombination,
           DNA repair, and epigenetic silencing of gene
           expression..
          Length = 178

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 149 SGGEKKI---AEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
           SGGEK +   A I  ++ ++PS   +LDE D+ LD    +  +  +  +      F++IT
Sbjct: 96  SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVIT 155

Query: 205 HYQRLLN 211
             + +  
Sbjct: 156 LKKEMFE 162



 Score = 27.1 bits (60), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 28 PSEVVAIMGPNGSGKSTL 45
           +   AI+GPNGSGKS +
Sbjct: 21 SNSFNAIVGPNGSGKSNI 38


>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of
          RNase L inhibitor.  The ABC ATPase, RNase L inhibitor
          (RLI), is a key enzyme in ribosomal biogenesis,
          formation of translation preinitiation complexes, and
          assembly of HIV capsids.  RLI's are not transport
          proteins and thus cluster with a group of soluble
          proteins that lack the transmembrane components
          commonly found in other members of the family.
          Structurally, RLI's have an N-terminal Fe-S domain and
          two nucleotide-binding domains which are arranged to
          form two composite active sites in their interface
          cleft.  RLI is one of the most conserved enzymes
          between archaea and eukaryotes with a sequence identity
          of more than 48%.  The high degree of evolutionary
          conservation suggests that RLI performs a central role
          in archaeal and eukaryotic physiology..
          Length = 246

 Score = 36.8 bits (85), Expect = 0.006
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 21 GLNLKVEP-----SEVVAIMGPNGSGKSTLSYLLSG-----HKDYEITAGDILYKGESI 69
             L+VE      SEV+ I+GPNG GK+T   +L+G       D EI    + YK + I
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYI 70


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 36.1 bits (83), Expect = 0.010
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 19/196 (9%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           ++  L  ++EP   + I GPNG GKS+L  +L G   + +  G +L              
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL--WPVYNG-LLSI-----------P 542

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVR-KITAELGIN 136
               IF   Q P    G +  Q +    +EQ K +   +  +      V  +   +    
Sbjct: 543 RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGG 602

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D ++   ++  SGGEK+   + +M    P   +LDE  S + ID   +  +   A +  
Sbjct: 603 WDAVRDWKDV-LSGGEKQRMGMARMFYHRPKYALLDECTSAVSID---VEGKIFQAAKDA 658

Query: 197 DRSFLIITHYQRLLNY 212
             S L ITH   L  Y
Sbjct: 659 GISLLSITHRPSLWKY 674


>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
           excision repair in eubacteria is a process that repairs
           DNA damage by the removal of a 12-13-mer oligonucleotide
           containing the lesion.  Recognition and cleavage of the
           damaged DNA is a multistep ATP-dependent reaction that
           requires the UvrA, UvrB, and UvrC proteins.  Both UvrA
           and UvrB are ATPases, with UvrA having two ATP binding
           sites, which have the characteristic signature of the
           family of ABC proteins, and UvrB having one ATP binding
           site that is structurally related to that of helicases..
          Length = 176

 Score = 36.0 bits (83), Expect = 0.011
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 132 ELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
           ++G+    L + L+   SGGE    K+A  L       +L ILDE  +GL    +    +
Sbjct: 73  DVGLGYLTLGQKLS-TLSGGELQRVKLASELFSEP-PGTLFILDEPSTGLHQQDINQLLE 130

Query: 189 GVNALRSQDRSFLIITHYQRLLNY 212
            +  L     + ++I H   +L+ 
Sbjct: 131 VIKGLIDLGNTVILIEHNLDVLSS 154


>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
           processing and modification].
          Length = 592

 Score = 35.7 bits (82), Expect = 0.012
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 28/206 (13%)

Query: 28  PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW-----------SIVE 76
           P +V+ ++G NG GKST   +L+G +   +   D     + IL +            I+E
Sbjct: 99  PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
              K I +  QY  +IP     + +K  +      ++E++           ++  +L +N
Sbjct: 159 DNLKAI-IKPQYVDQIP-----RAVKGTVGSLLDRKDERDNK--------EEVCDQLDLN 204

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            ++L R +    SGGE +   I  + + +  + + DE  S LD+     AA  + +L + 
Sbjct: 205 -NLLDREVE-QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP 262

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLH 222
           DR  +++ H   +L+Y+  D I  L+
Sbjct: 263 DRYIIVVEHDLSVLDYLS-DFICCLY 287



 Score = 28.3 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 29  SEVVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKGESI 69
           SE++ ++G NG+GK+T   +L+G        EI   ++ YK + I
Sbjct: 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKI 411


>gnl|CDD|73039 cd03280, ABC_MutS2, MutS2 homologs in bacteria and eukaryotes.  The
           MutS protein initiates DNA mismatch repair by
           recognizing mispaired and unpaired bases embedded in
           duplex DNA and activating endo- and exonucleases to
           remove the mismatch.  Members of the MutS family also
           possess a conserved ATPase activity that belongs to the
           ATP binding cassette (ABC) superfamily.  MutS homologs
           (MSH) have been identified in most prokaryotic and all
           eukaryotic organisms examined. Prokaryotes have two
           homologs (MutS1 and MutS2), whereas seven MSH proteins
           (MSH1 to MSH7) have been identified in eukaryotes.  The
           homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6
           are primarily involved in mitotic mismatch repair,
           whereas MSH4-MSH5 is involved in resolution of Holliday
           junctions during meiosis.  All members of the MutS
           family contain the highly conserved Walker A/B ATPase
           domain, and many share a common mechanism of action.
           MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
           form sliding clamps, and recognition of specific DNA
           structures or lesions results in ADP/ATP exchange..
          Length = 200

 Score = 34.8 bits (80), Expect = 0.023
 Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDID---ALKIAAQGVNALRSQDRSFLIIT 204
           FS   K IA ILQ      SL +LDE  SG D     AL IA   +  L  +    +  T
Sbjct: 92  FSSHMKNIARILQ-HADPDSLVLLDELGSGTDPVEGAALAIAI--LEELLERGALVIATT 148

Query: 205 HYQRLLNY 212
           HY  L  Y
Sbjct: 149 HYGELKAY 156


>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
           the ATP-binding cassette of ABC transporters, but are
           not associated with membrane-spanning domains.  The
           conserved ATP-binding motifs common to Rad50 and the ABC
           transporter family include the Walker A and Walker B
           motifs, the Q loop, a histidine residue in the switch
           region, a D-loop, and a conserved LSGG sequence.  This
           conserved sequence, LSGG, is the most specific and
           characteristic motif of this family and is thus known as
           the ABC signature sequence..
          Length = 204

 Score = 34.0 bits (78), Expect = 0.039
 Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 58/228 (25%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEI 57
           L I+N+R+    ++ E    L L         I+G NG+GK+T    L Y L+G      
Sbjct: 4   LSIRNIRSFHERSEIEFFSPLTL---------IVGQNGAGKTTIIEALKYALTGELPPN- 53

Query: 58  TAGDILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
                  KG +     I E   +  + LAF                       +  N K+
Sbjct: 54  ------SKGGAHDPKLIREGEVRAQVKLAF-----------------------ENANGKK 84

Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPL--NLGF-SGGEKKIAEILQMRLLEPSLC---- 169
             I   TR +  +   +  +      PL    G  SGGEK +A ++    L  +      
Sbjct: 85  YTI---TRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCG 141

Query: 170 --ILDETDSGLDIDALKIAAQGVNALRSQDRSF--LIITHYQRLLNYI 213
              LDE  + LD + ++ +   +   R   ++F  ++ITH + L++  
Sbjct: 142 ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189


>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
           recombination, and repair].
          Length = 935

 Score = 34.0 bits (78), Expect = 0.042
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 22/121 (18%)

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETD 175
           IP   RK++ +  ++G+    L +P     SGGE    K+A+ L  R    +L ILDE  
Sbjct: 796 IPKIARKLQTLV-DVGLGYIKLGQPATT-LSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853

Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIA 235
           +GL  D +K   + ++ L  +  + ++I                  HN  +IKT D+ I 
Sbjct: 854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIE-----------------HNLDVIKTADWIID 896

Query: 236 L 236
           L
Sbjct: 897 L 897



 Score = 27.4 bits (61), Expect = 3.7
 Identities = 10/29 (34%), Positives = 23/29 (79%)

Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSY 47
          ++ ++L++  +++V I G +GSGKS+L++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLAF 44



 Score = 26.3 bits (58), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL 45
           ++ +++++       + G +GSGKSTL
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTL 643


>gnl|CDD|36598 KOG1384, KOG1384, KOG1384, tRNA delta(2)-isopentenylpyrophosphate
          transferase [Translation, ribosomal structure and
          biogenesis].
          Length = 348

 Score = 33.8 bits (77), Expect = 0.044
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKGESILDWSIVERASKGI 82
          VV IMG  G+GKS L+  L+     EI   D   +YKG  I+   I  +  KG+
Sbjct: 9  VVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGV 62


>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
           Nucleotide excision repair in eubacteria is a process
           that repairs DNA damage by the removal of a 12-13-mer
           oligonucleotide containing the lesion.  Recognition and
           cleavage of the damaged DNA is a multistep ATP-dependent
           reaction that requires the UvrA, UvrB, and UvrC
           proteins.  Both UvrA and UvrB are ATPases, with UvrA
           having two ATP binding sites, which have the
           characteristic signature of the family of ABC proteins
           and UvrB having one ATP binding site that is
           structurally related to that of helicases..
          Length = 261

 Score = 33.6 bits (77), Expect = 0.050
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 22/121 (18%)

Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETD 175
           IP   RK++    ++G+    L +P     SGGE    K+A+ L  R    +L ILDE  
Sbjct: 143 IPKIARKLQ-TLCDVGLGYIKLGQPATT-LSGGEAQRIKLAKELSKRSTGKTLYILDEPT 200

Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIA 235
           +GL    +K   + +  L  +  + ++I                  HN  +IK  D+ I 
Sbjct: 201 TGLHFHDVKKLLEVLQRLVDKGNTVVVIE-----------------HNLDVIKCADWIID 243

Query: 236 L 236
           L
Sbjct: 244 L 244



 Score = 26.7 bits (59), Expect = 6.3
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          ++ +++ +    +  + G +GSGKS+L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL 37


>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
          transfer from ATP to gluconate. The resulting product
          gluconate-6-phoshate is an important precursor of
          gluconate metabolism. GntK acts as a dimmer composed of
          two identical subunits..
          Length = 150

 Score = 32.9 bits (75), Expect = 0.082
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
          ++ +MG +GSGKST+   L+         GD L+   +I   +
Sbjct: 1  IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMA 43


>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
          (RLI) is a key enzyme in ribosomal biogenesis,
          formation of translation preinitiation complexes, and
          assembly of HIV capsids.  RLI's are not transport
          proteins, and thus cluster with a group of soluble
          proteins that lack the transmembrane components
          commonly found in other members of the family.
          Structurally, RLI's have an N-terminal Fe-S domain and
          two nucleotide-binding domains, which are arranged to
          form two composite active sites in their interface
          cleft.  RLI is one of the most conserved enzymes
          between archaea and eukaryotes with a sequence identity
          more than 48%.  The high degree of evolutionary
          conservation suggests that RLI performs a central role
          in archaeal and eukaryotic physiology..
          Length = 177

 Score = 32.7 bits (74), Expect = 0.091
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSG 51
          V+  EV+ I+GPNG+GK+T   +L+G
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAG 47



 Score = 29.2 bits (65), Expect = 1.1
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSF 200
           +P  +  SGGE +   I    L   +  + DE  + LDI+    AA+ +  L  +  ++ 
Sbjct: 66  KPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTA 125

Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
           L++ H   +L+Y+  D IHV       + G Y IA 
Sbjct: 126 LVVEHDLAVLDYLS-DRIHVFEG----EPGVYGIAS 156


>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
          reversible phosphorylation of cytidine monophosphate
          (CMP) to produce cytidine diphosphate (CDP), using ATP
          as the preferred phosphoryl donor..
          Length = 147

 Score = 32.8 bits (75), Expect = 0.091
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
          ++AI GP GSGKST++ LL+       +  G I
Sbjct: 1  IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33


>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
          ATPase component [Defense mechanisms].
          Length = 330

 Score = 32.7 bits (74), Expect = 0.098
 Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 1  MLEIKNLRAKIVDTD--TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYE 56
          +L+I+NL  +   +    + +  +++ +   E+  ++G +GSGKS ++  + G    ++ 
Sbjct: 3  LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62

Query: 57 ITAGDILYKGESILDWSIVER---ASKGIFLAFQYP 89
          +TA  + +    +L  S  ER       + + FQ P
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98


>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
          component/CCR4 associated factor [General function
          prediction only, Transcription].
          Length = 291

 Score = 31.5 bits (71), Expect = 0.20
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
          +E+  L+ K   +D  I    NL +       ++G NG+GK+TL  +LSG
Sbjct: 14 IEVSGLQFKYKVSDP-IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG 62


>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
           recombination, and repair].
          Length = 908

 Score = 31.6 bits (71), Expect = 0.21
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 149 SGGEK---------KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
           SGGE+          ++++LQ R     L  LDE    LD + L+  A+ +  L S  R 
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARLELL-FLDEPFGTLDEERLEKLAEILEELLSDGRQ 875

Query: 200 FLIITHYQRLLNYIK 214
            +II+H + L     
Sbjct: 876 IIIISHVEELKERAD 890



 Score = 27.3 bits (60), Expect = 4.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 8/44 (18%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          L +KN R+   D D E +         S +  I+GPNG+GKS++
Sbjct: 6  LRLKNFRS-FKDIDIEKLFD-------SGIFLIVGPNGAGKSSI 41


>gnl|CDD|37414 KOG2203, KOG2203, KOG2203, GTP-binding protein [General function
          prediction only].
          Length = 772

 Score = 31.5 bits (71), Expect = 0.23
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPV 90
          VVA+MG   SGKSTL   L G    E+ A    +KG          + +KGI+LA    +
Sbjct: 39 VVAVMGSQSSGKSTLLNHLFGTNFREMDA----FKGRQ--------QTTKGIWLARCAGI 86

Query: 91 EIPGIIMM 98
          E P I++M
Sbjct: 87 E-PCILVM 93


>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 179

 Score = 31.4 bits (71), Expect = 0.24
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
          V+ I G  GSGK+T++  L+ H   + ++AG I
Sbjct: 2  VITISGLPGSGKTTVARELAEHLGLKLVSAGTI 34


>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
            chromosome partitioning].
          Length = 1163

 Score = 31.2 bits (70), Expect = 0.29
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 149  SGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
            SGGEK    +A +  ++   P+   +LDE D+ LD   ++  A+ +  +  + + F++IT
Sbjct: 1068 SGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQ-FIVIT 1126

Query: 205  H 205
            H
Sbjct: 1127 H 1127



 Score = 26.1 bits (57), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 28 PSEVVAIMGPNGSGKSTL 45
               AI+GPNGSGKS +
Sbjct: 23 SPGFTAIVGPNGSGKSNI 40


>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 222

 Score = 30.9 bits (70), Expect = 0.29
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDY 55
          ++AI GP GSGKST++ +L+    +
Sbjct: 6  IIAIDGPAGSGKSTVAKILAEKLGF 30


>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains. The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 213

 Score = 30.9 bits (70), Expect = 0.37
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 36/208 (17%)

Query: 34  IMGPNGSGKSTL----SYLLSGHKDYEITA---GDILYKGESILDWSIVERASKGIFLAF 86
           I+GPNGSGKS++       L G       A   G+ + +G    D   +E    G     
Sbjct: 28  IIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGC---DEGTIEIELYG----- 79

Query: 87  QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL 146
             P  I    + QFL      +    +  ELL+     K R+        +  L      
Sbjct: 80  -NPGNIQVDNLCQFLPQDRVGEFAKLSPIELLV-----KFREGE-----QLQELDPHHQ- 127

Query: 147 GFSGGEKKIAEILQ-MRLLEPSLC---ILDETDSGLDIDALKIAAQGVNALRSQDRS--- 199
             SGGE+ ++ +L  + L E + C   ++DE + G+D    +     +     ++ +   
Sbjct: 128 --SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQY 185

Query: 200 FLIITHYQRLLNYIKPDTIHVLHNGKII 227
           FLI       LNY +  T+  ++NG  I
Sbjct: 186 FLITPKLLPGLNYHEKMTVLCVYNGPHI 213


>gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate
          transport and metabolism].
          Length = 191

 Score = 30.8 bits (69), Expect = 0.41
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84
          V+ +MG +GSGKST+   LS     +   GD L+   +      VE+ ++GI L
Sbjct: 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN------VEKMTQGIPL 61


>gnl|CDD|133282 cd01882, BMS1, Bms1.  Bms1 is an essential, evolutionarily
          conserved, nucleolar protein.  Its depletion interferes
          with processing of the 35S pre-rRNA at sites A0, A1,
          and A2, and the formation of 40S subunits.  Bms1, the
          putative endonuclease Rc11, and the essential U3 small
          nucleolar RNA form a stable subcomplex that is believed
          to control an early step in the formation of the 40S
          subumit.  The C-terminal domain of Bms1 contains a
          GTPase-activating protein (GAP) that functions
          intramolecularly.  It is believed that Rc11 activates
          Bms1 by acting as a guanine-nucleotide exchange factor
          (GEF) to promote GDP/GTP exchange, and that activated
          (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
          Length = 225

 Score = 30.7 bits (70), Expect = 0.41
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 26 VEPSEVVAIMGPNGSGKSTL 45
            P  VVA++GP G GK+TL
Sbjct: 36 EPPPLVVAVVGPPGVGKTTL 55


>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
          phosphoryl transfer from adenosine triphosphates (ATP)
          to adenosine monophosphates (AMP) and to yield
          adenosine diphosphates (ADP). This enzyme is required
          for the biosynthesis of ADP and is essential for
          homeostasis of adenosine phosphates..
          Length = 194

 Score = 30.2 bits (68), Expect = 0.52
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDIL 63
           + ++GP GSGK T +  L+       I+ GD+L
Sbjct: 1  RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLL 34


>gnl|CDD|133260 cd01851, GBP, Guanylate-binding protein (GBP), N-terminal domain.
          Guanylate-binding proteins (GBPs) define a group of
          proteins that are synthesized after activation of the
          cell by interferons.  The biochemical properties of
          GBPs are clearly different from those of Ras-like and
          heterotrimeric GTP-binding proteins.  They bind guanine
          nucleotides with low affinity (micromolar range), are
          stable in their absence and have a high turnover
          GTPase.  In addition to binding GDP/GTP, they have the
          unique ability to bind GMP with equal affinity and
          hydrolyze GTP not only to GDP, but also to GMP.
          Furthermore, two unique regions around the base and the
          phosphate-binding areas, the guanine and the phosphate
          caps, respectively, give the nucleotide-binding site a
          unique appearance not found in the canonical
          GTP-binding proteins.  The phosphate cap, which
          constitutes the region analogous to switch I,
          completely shields the phosphate-binding site from
          solvent such that a potential GTPase-activating protein
          (GAP) cannot approach.
          Length = 224

 Score = 30.4 bits (69), Expect = 0.54
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 31 VVAIMGPNGSGKSTL 45
          VV++ GP  SGKS L
Sbjct: 9  VVSVFGPQSSGKSFL 23


>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
           only].
          Length = 733

 Score = 30.1 bits (67), Expect = 0.56
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD---ILYKGESILDWS 73
           + +  +    + S +V +  P G GK+  S +L+     E        I       +   
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIED 261

Query: 74  IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL 133
           +  RA K IF  F     + G  +    K  L  +        L   D  +K+      L
Sbjct: 262 MYRRA-KEIFGLF----SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKL-----LL 311

Query: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
            + +    + L     G      +   + LL  SL ILDE     D   L      + AL
Sbjct: 312 ALIVVTPIQILIFSVKGF-----KFEFLALLLTSLVILDEVHLYADETMLAALLALLEAL 366

Query: 194 RSQDRSFLIIT 204
                  L+++
Sbjct: 367 AEAGVPVLLMS 377


>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
           [Function unknown].
          Length = 491

 Score = 30.1 bits (67), Expect = 0.60
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 31  VVAIMGPNGSGKSTLSYLLSG 51
           V+ ++G  GSGKSTL  LL+ 
Sbjct: 190 VIGVLGGQGSGKSTLLSLLAA 210


>gnl|CDD|30191 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
          phosphorylation of deoxyribonucleosides to yield
          corresponding monophosphates (dNMPs). This family
          consists of various deoxynucleoside kinases including
          deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
          2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
          2.7.1.21) kinases. They are key enzymes in the salvage
          of deoxyribonucleosides originating from extra- or
          intracellular breakdown of DNA..
          Length = 193

 Score = 29.8 bits (67), Expect = 0.69
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEI 57
          V+ + G  G+GKSTL+  L+ H  YE+
Sbjct: 1  VIVVEGNIGAGKSTLAKELAEHLGYEV 27


>gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and
          related GTPases of G3E family [Amino acid transport and
          metabolism].
          Length = 323

 Score = 29.9 bits (67), Expect = 0.77
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 4  IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          +++ R        E++R L  +   + V+ I G  G+GKSTL
Sbjct: 26 VESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTL 67


>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
          only].
          Length = 300

 Score = 29.6 bits (66), Expect = 0.84
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52
          +V I GP GSGKSTLS L+   
Sbjct: 52 IVGISGPQGSGKSTLSALIVRL 73


>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
          transport and metabolism].
          Length = 178

 Score = 29.5 bits (66), Expect = 0.85
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEIT---AGDIL 63
          + I+GP G+GKSTL+  L+  K   +     GDIL
Sbjct: 3  ILILGPPGAGKSTLAKKLA--KKLGLPHLDTGDIL 35


>gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved
           in the butanol and ethanol formation pathway in
           bacteria.  NADPH-dependent butanol dehydrogenase (BDH)
           is involved in the butanol and ethanol formation pathway
           of some bacteria. The fermentation process is
           characterized by an acid producing growth phase,
           followed by a solvent producing phase. The latter phase
           is associated with the induction of solventogenic
           enzymes such as butanol dehydrogenase. The activity of
           the enzymes require NADPH as cofactor, as well as
           divalent ions zinc or iron. This family is a member of
           the iron-containing alcohol dehydrogenase superfamily.
           Protein structure has a dehydroquinate synthase-like
           fold.
          Length = 375

 Score = 29.5 bits (67), Expect = 0.85
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           K A  ++R A   KE  + D    VR++  +LGI
Sbjct: 289 KDAEAKKRYAGLAKEEGVEDLIEAVRELNKKLGI 322


>gnl|CDD|33076 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
          metabolism].
          Length = 161

 Score = 29.5 bits (66), Expect = 0.91
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 35 MGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84
          MG +GSGKST+   L+     +   GD L+   +I      E+ S GI L
Sbjct: 1  MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANI------EKMSAGIPL 44


>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
          biogenesis [Translation, ribosomal structure and
          biogenesis].
          Length = 1077

 Score = 29.4 bits (65), Expect = 0.96
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 28 PSEVVAIMGPNGSGKSTL 45
          P  +VA++GP G+GKSTL
Sbjct: 68 PPFIVAVVGPPGTGKSTL 85


>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains. The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 247

 Score = 29.4 bits (66), Expect = 0.96
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 49/219 (22%)

Query: 33  AIMGPNGSGKSTL----SYLLSGHKDYEI---TAGDILYKGESILDWSIVERASKGIFLA 85
            I+GPNGSGKS L    S++L G K   +      D++Y+        + +  S   ++ 
Sbjct: 26  CIIGPNGSGKSNLMDAISFVL-GEKSSHLRSKNLKDLIYRA------RVGKPDSNSAYVT 78

Query: 86  FQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLIPDFTRKVRKI--------------- 129
             Y  E        F +I        R N K + + ++  ++ KI               
Sbjct: 79  AVY--EDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGD 136

Query: 130 TAELGINMDMLKR--PLNLGFSGGEKKIAE---ILQMRLLEPS-LCILDETDSGLD-IDA 182
              +       KR   ++   SGGEK +A    +  +   +P+   +LDE D+ LD  + 
Sbjct: 137 VESIASKNPPGKRFRDMDN-LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNV 195

Query: 183 LKIAAQGVNALRSQDRS---FLIITHYQRLLNYIKPDTI 218
            K+A    + +R Q      F++I+  +    + K D +
Sbjct: 196 GKVA----SYIREQAGPNFQFIVISLKEEF--FSKADAL 228


>gnl|CDD|32701 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
           flagella [Cell motility and secretion / Intracellular
           trafficking and secretion].
          Length = 235

 Score = 29.4 bits (66), Expect = 0.98
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 9   AKIVDTDT-EIIRGLNLKVEPSEVVAIMGPNGSGKSTLS------YLLSGHKDY----EI 57
            KI+ +   E+ + L   +    ++ I G NG+GKS LS      +L++G++      E+
Sbjct: 7   KKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQ---YPVEIPGIIMMQFLKIALNEQRKARNE 114
           T  + + + ES L + + +    G  L F     PV        + L + L   +  R E
Sbjct: 67  TVREFIKQMES-LSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIK--RWE 123

Query: 115 KELLIPD 121
           K+++I D
Sbjct: 124 KDVIIID 130


>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 802

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 24  LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEITAGDIL--YKGES 68
           L V P   V + GP G GK++L+  ++G        I+A +I+    GES
Sbjct: 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267


>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain.  This domain is
            found at the N terminus of SMC proteins. The SMC
            (structural maintenance of chromosomes) superfamily
            proteins have ATP-binding domains at the N- and
            C-termini, and two extended coiled-coil domains separated
            by a hinge in the middle. The eukaryotic SMC proteins
            form two kind of heterodimers: the SMC1/SMC3 and the
            SMC2/SMC4 types. These heterodimers constitute an
            essential part of higher order complexes, which are
            involved in chromatin and DNA dynamics. This family also
            includes the RecF and RecN proteins that are involved in
            DNA metabolism and recombination.
          Length = 1162

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 148  FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLII 203
             SGGEK    +A I  ++   P+   +LDE D+ LD   +   A  +    S++  F++I
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKE-LSKNAQFIVI 1137

Query: 204  THYQRLLN 211
            +  + +L 
Sbjct: 1138 SLREEMLE 1145



 Score = 26.1 bits (57), Expect = 9.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 33 AIMGPNGSGKS 43
          AI+GPNGSGKS
Sbjct: 27 AIVGPNGSGKS 37


>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
          virulence [General function prediction only].
          Length = 440

 Score = 29.2 bits (65), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          KI   +      L++    SE   I+GPNGSGK+T+
Sbjct: 5  KISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTV 40


>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
          Nucleotide excision repair in eubacteria is a process
          that repairs DNA damage by the removal of a 12-13-mer
          oligonucleotide containing the lesion.  Recognition and
          cleavage of the damaged DNA is a multistep
          ATP-dependent reaction that requires the UvrA, UvrB,
          and UvrC proteins.  Both UvrA and UvrB are ATPases,
          with UvrA having two ATP binding sites, which have the
          characteristic signature of the family of ABC proteins,
          and UvrB having one ATP binding site that is
          structurally related to that of helicases..
          Length = 226

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 9/29 (31%), Positives = 22/29 (75%)

Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSY 47
          ++ +++ +  +++V I G +GSGKS+L++
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAF 39


>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
          Translocation is mediated by EF-G (also called
          translocase).  The structure of EF-G closely resembles
          that of the complex between EF-Tu and tRNA.  This is an
          example of molecular mimicry; a protein domain evolved
          so that it mimics the shape of a tRNA molecule.  EF-G
          in the GTP form binds to the ribosome, primarily
          through the interaction of its EF-Tu-like domain with
          the 50S subunit.  The binding of EF-G to the ribosome
          in this manner stimulates the GTPase activity of EF-G. 
          On GTP hydrolysis, EF-G undergoes a conformational
          change that forces its arm deeper into the A site on
          the 30S subunit.  To accommodate this domain, the
          peptidyl-tRNA in the A site moves to the P site,
          carrying the mRNA and the deacylated tRNA with it.  The
          ribosome may be prepared for these rearrangements by
          the initial binding of EF-G as well.  The dissociation
          of EF-G leaves the ribosome ready to accept the next
          aminoacyl-tRNA into the A site.  This group contains
          only bacterial members.
          Length = 268

 Score = 29.1 bits (66), Expect = 1.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)

Query: 32 VAIMGPNGSGKSTL 45
          +A++G +GSGK+TL
Sbjct: 2  IALVGHSGSGKTTL 15


>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 243

 Score = 28.3 bits (63), Expect = 1.9
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 34  IMGPNGSGKS----TLSYLLSGHKDY--EITAGDILYKGESILDWS----IVERASKGIF 83
           ++G NGSGKS     + ++LS    +  E     +L++G      S    I+   S   F
Sbjct: 28  VVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRF 87

Query: 84  LAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI---------PDFTRKVRKITAELG 134
              +  V +   I ++  +  L+++   +N+   L+         P +     KI +   
Sbjct: 88  PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTN 147

Query: 135 INMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPS-LCILDETDSGLD 179
           +  D  +    L  SGG+K    +A I  ++  +P+   + DE D+ LD
Sbjct: 148 MKQDEQQEMQQL--SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALD 194


>gnl|CDD|144640 pfam01121, CoaE, Dephospho-CoA kinase.  This family catalyses the
          phosphorylation of the 3'-hydroxyl group of
          dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24.
          This enzyme uses ATP in its reaction.
          Length = 179

 Score = 28.4 bits (64), Expect = 2.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKGESILDWSIVERASKGIFLA 85
          +V + G  GSGKST++ L +       D ++ A  ++  G   L  +IV+     I LA
Sbjct: 2  IVGLTGGIGSGKSTVANLFADLGVPIVDADVIARQVVEPGSPALA-AIVDHFGPDILLA 59


>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 375

 Score = 28.4 bits (63), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 23  NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD 54
           +L +    +V I+G  GSGKST    + G+++
Sbjct: 121 DLALAKRGLVIIVGATGSGKSTTMAAMIGYRN 152


>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
           replication, recombination, and repair].
          Length = 843

 Score = 28.3 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 167 SLCILDETDSGLDI-DALKIAAQGVNALRSQDRSF-LIITHYQRL 209
           SL ILDE   G    D L IA   +  L  +     L  THY  L
Sbjct: 688 SLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHEL 732


>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
          [Translation, ribosomal structure and biogenesis].
          Length = 308

 Score = 28.3 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGD--ILYKGESI 69
          ++ I GP  SGK+ L+  L+     EI + D   +Y+G  I
Sbjct: 5  LIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDI 45


>gnl|CDD|33754 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
           function prediction only].
          Length = 747

 Score = 28.1 bits (62), Expect = 2.3
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 4   IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST-----LSYLLSGHKDYEIT 58
           ++++   I     EIIR      E ++++ + G  GSGK+T     ++YLL G++   + 
Sbjct: 206 MRDIVETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-PLQ 259

Query: 59  AGDIL 63
           A  +L
Sbjct: 260 AKPVL 264


>gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases)
          [Translation, ribosomal structure and biogenesis].
          Length = 697

 Score = 27.9 bits (62), Expect = 2.4
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82
          + I+    +GK+TL+  +  +       G++   G + +DW   E+  +GI
Sbjct: 13 IGIVAHIDAGKTTLTERILFYTGIISKIGEVH-DGAATMDWMEQEQE-RGI 61


>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
          [Coenzyme metabolism].
          Length = 187

 Score = 28.0 bits (62), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 29 SEVVAIMGPNGSGKSTL 45
           + VAI+G   SGKSTL
Sbjct: 8  VKTVAILGGESSGKSTL 24


>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein.  IVa2 protein can
           interact with the adenoviral packaging signal and that
           this interaction involves DNA sequences that have
           previously been demonstrated to be required for
           packaging. During the course of lytic infection, the
           adenovirus major late promoter (MLP) is induced to high
           levels after replication of viral DNA has started. IVa2
           is a transcriptional activator of the major late
           promoter.
          Length = 370

 Score = 27.7 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHK 53
           LN  ++P  +  + GP G GKS L   LLS   
Sbjct: 81  LNYGLQPV-IGVVYGPTGCGKSQLLRNLLSCQL 112


>gnl|CDD|73237 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a
          critical gluconeogenic enzyme, catalyzes the first
          committed step in the diversion of tricarboxylic acid
          cycle intermediates toward gluconeogenesis. It
          catalyzes the reversible decarboxylation and
          phosphorylation of oxaloacetate to yield
          phosphoenolpyruvate and carbon dioxide, using a
          nucleotide molecule (ATP  or GTP) for the phosphoryl
          transfer, and has a strict requirement for divalent
          metal ions for activity.  PEPCK's separate into two
          phylogenetic groups based on their nucleotide substrate
          specificity (the ATP-, and GTP-dependent
          groups).HprK/P, the bifunctional histidine-containing
          protein kinase/phosphatase, controls the
          phosphorylation state of the phosphocarrier protein HPr
          and regulates the utilization of carbon sources by
          gram-positive bacteria. It catalyzes both the
          ATP-dependent phosphorylation of HPr and its
          dephosphorylation by phosphorolysis. PEPCK and the
          C-terminal catalytic domain of HprK/P are structurally
          similar with conserved active site residues suggesting
          that these two phosphotransferases have related
          functions..
          Length = 107

 Score = 27.7 bits (61), Expect = 2.9
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE---- 76
          G+ + V     V I G +G GK+ L+  L   K + +   D +   E   D  I      
Sbjct: 7  GVLVDVYGKVGVLITGDSGIGKTELALELIKRK-HRLVGDDNVEIREDSKDELIGRNPEL 65

Query: 77 ----RASKGIFLAFQYPV 90
              R    IFL  +  V
Sbjct: 66 GLEIRLRLNIFLITKKTV 83


>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein
          [General function prediction only].
          Length = 398

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 5  KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49
               +I DT                VV ++GP  SGKSTL+  L
Sbjct: 53 SEPLEEIADTWESKSESAGKV----GVVMVVGPVDSGKSTLTTYL 93


>gnl|CDD|147726 pfam05729, NACHT, NACHT domain.  This NTPase domain is found in
          apoptosis proteins as well as those involved in MHC
          transcription activation. This family is closely
          related to pfam00931.
          Length = 165

 Score = 27.7 bits (62), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 31 VVAIMGPNGSGKSTL 45
           V + G  GSGK+TL
Sbjct: 2  TVILQGEAGSGKTTL 16


>gnl|CDD|35440 KOG0219, KOG0219, KOG0219, Mismatch repair ATPase MSH2 (MutS
           family) [Replication, recombination and repair].
          Length = 902

 Score = 27.6 bits (61), Expect = 3.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 1   MLEIKNLRAKIVDTDTE---IIRGLNLKVEPSEVVAIMGPNGSGKST 44
            LE+K  R  +++   E   I   + L+     ++ I GPN  GKST
Sbjct: 614 RLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKST 660


>gnl|CDD|133296 cd01896, DRG, The developmentally regulated GTP-binding protein
          (DRG) subfamily is an uncharacterized member of the Obg
          family, an evolutionary branch of GTPase superfamily
          proteins.  GTPases act as molecular switches regulating
          diverse cellular processes.  DRG2 and DRG1 comprise the
          DRG subfamily in eukaryotes.  In view of their
          widespread expression in various tissues and high
          conservation among distantly related species in
          eukaryotes and archaea, DRG proteins may regulate
          fundamental cellular processes.  It is proposed that
          the DRG subfamily proteins play their physiological
          roles through RNA binding.
          Length = 233

 Score = 27.5 bits (62), Expect = 3.4
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHK----DYEIT-----AGDILYKGESI--LDW-SIVERAS 79
          VA++G    GKSTL   L+  K     YE T      G + YKG  I  LD   I+E A+
Sbjct: 3  VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAA 62

Query: 80 KG 81
           G
Sbjct: 63 DG 64


>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
           CHL12/CTF18 [Energy production and conversion,
           Replication, recombination and repair].
          Length = 877

 Score = 27.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 28  PSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGD 61
           P +++ + GP G GK+TL+++++    Y   EI A D
Sbjct: 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361


>gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
          involved in the metabolism of nicotinamide adenine
          dinucleotide (NAD+). This enzyme catalyzes the
          phosphorylation of nicotinamide riboside (NR) to form
          nicotinamide mononucleotide (NMN). It defines the NR
          salvage pathway of NAD+ biosynthesis in addition to the
          pathways through nicotinic acid mononucleotide (NaMN).
          This enzyme can also phosphorylate the anticancer drug
          tiazofurin, which is an analog of nicotinamide
          riboside..
          Length = 187

 Score = 27.6 bits (61), Expect = 3.5
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGH---------KDYEITAGDILYKGESILDWSIVE 76
          +V I G   SGK+TL+ LL             D+     +I         W ++E
Sbjct: 1  IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLE 55


>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
          metabolism [Inorganic ion transport and metabolism].
          Length = 192

 Score = 27.6 bits (61), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 25 KVEPSEVVAIMGPNGSGKSTL 45
          +     ++A++GP+G+GK TL
Sbjct: 1  RTFMGRLIAVVGPSGAGKDTL 21


>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 212

 Score = 27.5 bits (61), Expect = 3.7
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 39/185 (21%)

Query: 33  AIMGPNGSGKSTL--SYLLS-GHKDYEITAG---DILYKGES--ILDWSIVERASKGIFL 84
           AI+GPNGSGKS +  S L   G +  ++      D+++       LD   VE       +
Sbjct: 29  AIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE-------V 81

Query: 85  AFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPDFTRKVRKITAELGINMDMLKRP 143
            FQ  ++ P   +++   I L+  R    + E+  I    +K  K  + L          
Sbjct: 82  HFQEIIDKP---LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNL---------- 128

Query: 144 LNLGFSGGEK---KIAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
                SGGEK    +A +  +   +P+ L ++DE D+ LD   + I A  +   R+++  
Sbjct: 129 -----SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQ 182

Query: 200 FLIIT 204
           F++I+
Sbjct: 183 FIVIS 187


>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes.  The
          MutS protein initiates DNA mismatch repair by
          recognizing mispaired and unpaired bases embedded in
          duplex DNA and activating endo- and exonucleases to
          remove the mismatch.  Members of the MutS family
          possess C-terminal domain with a conserved ATPase
          activity that belongs to the ATP binding cassette (ABC)
          superfamily.  MutS homologs (MSH) have been identified
          in most prokaryotic and all eukaryotic organisms
          examined.  Prokaryotes have two homologs (MutS1 and
          MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
          been identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 199

 Score = 27.5 bits (61), Expect = 3.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 3  EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          E KNL   ++  +  +   +++  E    + I G N SGKST 
Sbjct: 1  EAKNLGHPLIGREKRVANDIDM--EKKNGILITGSNMSGKSTF 41


>gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing
          and modification].
          Length = 674

 Score = 27.5 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 25 KVEPSEVVAIMGPNGSGKST 44
           VE ++V+ ++G  GSGKST
Sbjct: 62 AVEDNQVLIVIGETGSGKST 81


>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 457

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 36  GPNGSGKSTLSYLLSGHKDYEI 57
           GP G+GKS+    ++ + +Y+I
Sbjct: 242 GPPGTGKSSFIAAMANYLNYDI 263


>gnl|CDD|133356 cd04156, ARLTS1, ARLTS1 subfamily.  ARLTS1 (Arf-like tumor
          suppressor gene 1), also known as Arl11, is a member of
          the Arf family of small GTPases that is believed to
          play a major role in apoptotic signaling.  ARLTS1 is
          widely expressed and functions as a tumor suppressor
          gene in several human cancers.  ARLTS1 is a
          low-penetrance suppressor that accounts for a small
          percentage of familial melanoma or familial chronic
          lymphocytic leukemia (CLL).  ARLTS1 inactivation seems
          to occur most frequently through biallelic
          down-regulation by hypermethylation of the promoter.
          In breast cancer, ARLTS1 alterations were typically a
          combination of a hypomorphic polymorphism plus loss of
          heterozygosity.  In a case of thyroid adenoma, ARLTS1
          alterations were polymorphism plus promoter
          hypermethylation.  The nonsense polymorphism Trp149Stop
          occurs with significantly greater frequency in familial
          cancer cases than in sporadic cancer cases, and the
          Cys148Arg polymorphism is associated with an increase
          in high-risk familial breast cancer.
          Length = 160

 Score = 27.4 bits (61), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYE 56
          V ++G + +GKSTL Y L   +   
Sbjct: 2  VLLLGLDSAGKSTLLYKLKHAELVT 26


>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
          only].
          Length = 233

 Score = 27.2 bits (60), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 18 IIRGLNLKVE-PSEVVAIMGPNGSGKSTL 45
            R L  ++E  + +  I G NGSGKSTL
Sbjct: 25 AFRHLEERLEFRAPITFITGENGSGKSTL 53


>gnl|CDD|38289 KOG3079, KOG3079, KOG3079, Uridylate kinase/adenylate kinase
          [Nucleotide transport and metabolism].
          Length = 195

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY-EITAGDIL 63
          K++   ++ ++G  GSGK T    +     +  ++AGD+L
Sbjct: 4  KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLL 43


>gnl|CDD|144704 pfam01204, Trehalase, Trehalase.  Trehalase (EC:3.2.1.28) is known
           to recycle trehalose to glucose. Trehalose is a
           physiological hallmark of heat-shock response in yeast
           and protects of proteins and membranes against a variety
           of stresses. This family is found in conjunction with
           pfam07492 in fungi.
          Length = 509

 Score = 27.3 bits (61), Expect = 4.5
 Identities = 12/45 (26%), Positives = 14/45 (31%)

Query: 99  QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRP 143
              KI     R        L P   RKV+K    L     +L  P
Sbjct: 70  FLAKIEDPSLRLWAEHLHALWPALVRKVKKKVGLLPEASSLLPVP 114


>gnl|CDD|35441 KOG0220, KOG0220, KOG0220, Mismatch repair ATPase MSH4 (MutS
           family) [Replication, recombination and repair].
          Length = 867

 Score = 26.9 bits (59), Expect = 4.8
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 5   KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST 44
           K    K +  +T +  G N  +       I GPN SGKST
Sbjct: 604 KISAEKPIANNTYVTEGSNFLI-------ITGPNMSGKST 636


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
          also known as guanylate kinase (GKase), catalyzes the
          reversible phosphoryl transfer from adenosine
          triphosphate (ATP) to guanosine monophosphate (GMP) to
          yield adenosine diphosphate (ADP) and guanosine
          diphosphate (GDP). It plays an essential role in the
          biosynthesis of guanosine triphosphate (GTP). This
          enzyme is also important for the activation of some
          antiviral and anticancer agents, such as acyclovir,
          ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score = 27.0 bits (60), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 31 VVAIMGPNGSGKSTL-SYLLSGHKDY 55
          ++ + GP+G GKSTL   LL      
Sbjct: 1  LIVLSGPSGVGKSTLLKRLLEEFDPN 26


>gnl|CDD|38230 KOG3020, KOG3020, KOG3020, TatD-related DNase [Replication,
           recombination and repair].
          Length = 296

 Score = 26.8 bits (59), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 140 LKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
           LK  L +GF+G   K  E L++    P   +L ETDS
Sbjct: 193 LKLGLYIGFTGCSLKTEENLEVLRSIPLERLLLETDS 229


>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
            protein 1 (sister chromatid cohesion complex Cohesin,
            subunit SMC1) [Cell cycle control, cell division,
            chromosome partitioning].
          Length = 1141

 Score = 26.8 bits (59), Expect = 5.2
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 10/68 (14%)

Query: 142  RPLNLGFSGGEKKIAEI---LQMRLLEPS-LCILDETDSGLD-IDALKIAAQGVNALRSQ 196
            RP++   SGGEK +A +     +   +P+   +LDE D+ LD  +  K+A    + +RS 
Sbjct: 1047 RPMDN-LSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVA----SYIRSS 1101

Query: 197  DRSFLIIT 204
            +  F++I+
Sbjct: 1102 NFQFIVIS 1109



 Score = 26.8 bits (59), Expect = 6.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 31 VVAIMGPNGSGKSTL 45
            AI+GPNGSGKS L
Sbjct: 27 FTAIIGPNGSGKSNL 41


>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains.  The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 251

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAE---ILQMRLLEPS-LCILDETDSGLDI 180
           +IT  L +   + K  L    SGG++ +     IL + L +P+ + ILDE D+ LD+
Sbjct: 149 RITKVLNMG-GVWKESLT-ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203


>gnl|CDD|36580 KOG1366, KOG1366, KOG1366, Alpha-macroglobulin [Posttranslational
           modification, protein turnover, chaperones].
          Length = 1436

 Score = 26.9 bits (59), Expect = 5.5
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 22/133 (16%)

Query: 90  VEIPGIIMMQFLKIALNEQRKARNEKELLIP-DFTRKVRKITA-----ELGINMDMLKRP 143
           VE  GI   +   + ++    A  E  L +P D      +         LG +M+ L   
Sbjct: 871 VEPEGITQERNFSVLIDLSVSASKELSLGVPNDVVPGSERARISVVGDVLGPSMNNLSNL 930

Query: 144 LNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLII 203
           L L +  GE+       M    P++ +L           L    Q    L+ +   FL  
Sbjct: 931 LRLPYGCGEQ------NMINFAPNIYVLKY---------LPKTNQLTPELKRKALKFLEQ 975

Query: 204 THYQRLLNYIKPD 216
             YQR L Y + D
Sbjct: 976 G-YQRQLTYKRAD 987


>gnl|CDD|38089 KOG2878, KOG2878, KOG2878, Predicted kinase [General function
          prediction only].
          Length = 282

 Score = 26.9 bits (59), Expect = 5.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
          V+   GP GSGKSTL + L    DY++T
Sbjct: 33 VIGFSGPQGSGKSTLVFAL----DYKLT 56


>gnl|CDD|31270 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
          Length = 283

 Score = 26.8 bits (59), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 17  EIIRGLNLKVEPSE-VVAIMGPNGSGKSTLSYLL 49
           E++R L    +    ++ I G    GKST + +L
Sbjct: 69  ELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARIL 102


>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
           secretion].
          Length = 407

 Score = 26.8 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 23  NLKVEPSEVVAIMGPNGSGKST 44
           NL VE   V+A++GP G GK+T
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTT 218


>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1.  The sulfonylurea receptor
           SUR is an ATP transporter of the ABCC/MRP family with
           tandem ATPase binding domains.  Unlike other ABC
           proteins, it has no intrinsic transport function,
           neither active nor passive, but associates with the
           potassium channel proteins Kir6.1 or Kir6.2 to form the
           ATP-sensitive potassium (K(ATP)) channel.  Within the
           channel complex, SUR serves as a regulatory subunit that
           fine-tunes the gating of Kir6.x in response to
           alterations in cellular metabolism.  It constitutes a
           major pharmaceutical target as it binds numerous drugs,
           K(ATP) channel openers and blockers, capable of up- or
           down-regulating channel activity..
          Length = 218

 Score = 26.6 bits (58), Expect = 5.9
 Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 19/200 (9%)

Query: 14  TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
           +    +  +N+++   ++  I+G  G GKS+L  LL+   + +   G + +  ++  + S
Sbjct: 12  SGLATLSNINIRIPTGQLTMIVGQVGCGKSSL--LLAILGEMQTLEGKVHWSNKNESEPS 69

Query: 74  IVERASKGIFLAFQYPVEIPGIIMMQF-----LKIALNEQR-KARNEKELLIPDFTRKVR 127
                S+  + +  Y  + P ++              N+QR KA  +   L PD      
Sbjct: 70  FEATRSRNRY-SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPF 128

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID-ALKIA 186
               E+G      +R +NL  SGG+++   + +      ++  LD+  S LDI  +  + 
Sbjct: 129 GDQTEIG------ERGINL--SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180

Query: 187 AQGV-NALRSQDRSFLIITH 205
            +G+   L+   R+ +++TH
Sbjct: 181 QEGILKFLQDDKRTLVLVTH 200


>gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC).  This
          family consists of several eukaryotic dynein light
          intermediate chain proteins. The light intermediate
          chains (LICs) of cytoplasmic dynein consist of multiple
          isoforms, which undergo post-translational modification
          to produce a large number of species. DLIC1 is known to
          be involved in assembly, organisation, and function of
          centrosomes and mitotic spindles when bound to
          pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
          that may play a role in maintaining Golgi organisation
          by binding cytoplasmic dynein 2 to its Golgi-associated
          cargo.
          Length = 490

 Score = 26.7 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHKDY 55
          V ++G +GSGK+TL   L G +  
Sbjct: 48 VLVLGEDGSGKTTLIAKLQGVEHP 71


>gnl|CDD|30727 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
          expression and maturation of urease and hydrogenase
          [Posttranslational modification, protein turnover,
          chaperones / Transcription].
          Length = 202

 Score = 26.7 bits (59), Expect = 6.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH--KDYEIT--AGDILYK 65
            L  K  P   + + GP GSGK+ L          +Y+I    GDI  K
Sbjct: 4  DRLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53


>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and
          metabolism].
          Length = 218

 Score = 26.7 bits (59), Expect = 6.5
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLS---GHKDYEITAGDILYKGESIL 70
          K E   ++ I G +GSGK+T++  LS   G +   + + D  YK +S L
Sbjct: 4  KPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHL 52


>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. 
          Length = 161

 Score = 26.8 bits (60), Expect = 6.5
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
             + G +G GKSTL   L    D     G+I
Sbjct: 37 TSVLAGQSGVGKSTLLNALLPELDLRT--GEI 66


>gnl|CDD|147074 pfam04730, Agro_virD5, Agrobacterium VirD5 protein.  The virD
           operon in Agrobacterium encodes a site-specific
           endonuclease, and a number of other poorly characterized
           products. This family represents the VirD5 protein.
          Length = 645

 Score = 26.4 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
           L+PS  I DE D   D +AL   +Q   A +S 
Sbjct: 224 LDPSAWIPDEHDPFEDGEALGPPSQASTANKSN 256


>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
           protein 4 (chromosome condensation complex Condensin,
           subunit C) [Chromatin structure and dynamics, Cell cycle
           control, cell division, chromosome partitioning].
          Length = 1293

 Score = 26.5 bits (58), Expect = 7.1
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 33  AIMGPNGSGKSTL 45
           AI+GPNGSGKS +
Sbjct: 112 AIVGPNGSGKSNV 124


>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
          is a family of proteins highly similar to the uridine
          monophosphate kinase (UMPK, EC 2.7.1.48), also known as
          uridine kinase or uridine-cytidine kinase (UCK)..
          Length = 179

 Score = 26.4 bits (58), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52
          VV I GP+GSGK+T +  LS  
Sbjct: 1  VVGIAGPSGSGKTTFAKKLSNQ 22


>gnl|CDD|146108 pfam03306, AAL_decarboxy, Alpha-acetolactate decarboxylase. 
          Length = 221

 Score = 26.3 bits (59), Expect = 7.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 43 STLSYLLSGHKDYEITAGDILYKG 66
          STLS L+ G  D  IT G++L  G
Sbjct: 5  STLSALMDGVYDGTITIGELLKHG 28


>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
          protein SMC5/Spr18, SMC superfamily [Chromatin
          structure and dynamics, Cell cycle control, cell
          division, chromosome partitioning, Replication,
          recombination and repair].
          Length = 1072

 Score = 26.5 bits (58), Expect = 7.4
 Identities = 9/12 (75%), Positives = 12/12 (100%)

Query: 34 IMGPNGSGKSTL 45
          I+GPNGSGKS++
Sbjct: 47 IIGPNGSGKSSI 58


>gnl|CDD|112137 pfam03308, ArgK, ArgK protein.  The ArgK protein acts as an
          ATPase enzyme and as a kinase, and phosphorylates
          periplasmic binding proteins involved in the LAO
          (lysine, arginine, ornithine)/AO transport systems.
          Length = 267

 Score = 26.6 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
           E++R L      +  V I G  G+GKSTL
Sbjct: 16 RELLRRLMPLTGRAHRVGITGVPGAGKSTL 45


>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
          subunit (SR-beta).  SR-beta and SR-alpha form the
          heterodimeric signal recognition particle (SRP or SR)
          receptor that binds SRP to regulate protein
          translocation across the ER membrane.  Nascent
          polypeptide chains are synthesized with an N-terminal
          hydrophobic signal sequence that binds SRP54, a
          component of the SRP.  SRP directs targeting of the
          ribosome-nascent chain complex (RNC) to the ER membrane
          via interaction with the SR, which is localized to the
          ER membrane.  The RNC is then transferred to the
          protein-conducting channel, or translocon, which
          facilitates polypeptide translation across the ER
          membrane or integration into the ER membrane.  SR-beta
          is found only in eukaryotes; it is believed to control
          the release of the signal sequence from SRP54 upon
          binding of the ribosome to the translocon.  High
          expression of SR-beta has been observed in human colon
          cancer, suggesting it may play a role in the
          development of this type of cancer.
          Length = 203

 Score = 26.5 bits (59), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 31 VVAIMGPNGSGKSTLSYLL 49
           V ++GP+ SGK+ L   L
Sbjct: 2  TVLLLGPSDSGKTALFTKL 20


>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase.  Enzyme that
          catalyses the phosphorylation of adenylylsulphate to
          3'-phosphoadenylylsulfate. This domain contains an ATP
          binding P-loop motif.
          Length = 157

 Score = 26.5 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 31 VVAIMGPNGSGKSTLSYLL 49
           V   G +GSGKST++  L
Sbjct: 4  TVWFTGLSGSGKSTIANAL 22


>gnl|CDD|73035 cd03276, ABC_SMC6_euk, Eukaryotic SMC6 proteins; SMC proteins are
           large (approximately 110 to 170 kDa), and each is
           arranged into five recognizable domains.  Amino-acid
           sequence homology of SMC proteins between species is
           largely confined to the amino- and carboxy-terminal
           globular domains. The amino-terminal domain contains a
           'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
           single-letter amino-acid code), which by mutational
           studies has been shown to be essential in several
           proteins.  The carboxy-terminal domain contains a
           sequence (the DA-box) that resembles a 'Walker B' motif,
           and a motif with homology to the signature sequence of
           the ATP-binding cassette (ABC) family of ATPases.  The
           sequence homology within the carboxy-terminal domain is
           relatively high within the SMC1-SMC4 group, whereas SMC5
           and SMC6 show some divergence in both of these
           sequences.  In eukaryotic cells, the proteins are found
           as heterodimers of SMC1 paired with SMC3, SMC2 with
           SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
          Length = 198

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 40/179 (22%)

Query: 34  IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS--KGIFLAFQYPVE 91
           I+G NGSGKS +           +TA  I   G++    S   R S  K +    +   +
Sbjct: 26  IVGNNGSGKSAI-----------LTALTIGLGGKA----SDTNRGSSLKDLIKDGESSAK 70

Query: 92  IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGG 151
           I          + L  Q    N   +L  D  R           ++  L        SGG
Sbjct: 71  I---------TVTLKNQGLDANPLCVLSQDMARSFLTSNKAAVRDVKTL--------SGG 113

Query: 152 EKKIAEI-LQMRLLEPSLC---ILDETDSGLDIDALKIAAQGV--NALRSQDRSFLIIT 204
           E+  + + L + L E        LDE D  +D+   KI+   +   A +   R F+ IT
Sbjct: 114 ERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172


>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA
          mismatch repair by recognizing mispaired and unpaired
          bases embedded in duplex DNA and activating endo- and
          exonucleases to remove the mismatch.  Members of the
          MutS family also possess a conserved ATPase activity
          that belongs to the ATP binding cassette (ABC)
          superfamily.  MutS homologs (MSH) have been identified
          in most prokaryotic and all eukaryotic organisms
          examined.  Prokaryotes have two homologs (MutS1 and
          MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
          been identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 202

 Score = 26.3 bits (58), Expect = 7.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 23 NLKVEPSEVVAIMGPNGSGKSTL 45
          ++ +    ++ I GPN  GKST 
Sbjct: 23 DINLGSGRLLLITGPNMGGKSTY 45


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 26.3 bits (58), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 30  EVVAIMGPNGSGKSTLSYLLSGHKD 54
           +   ++G +G GKSTL   L    D
Sbjct: 162 KTSVLVGQSGVGKSTLINALLPDLD 186


>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase.  This family includes RNA
          helicases thought to be involved in duplex unwinding
          during viral RNA replication. Members of this family
          are found in a variety of single stranded RNA viruses.
          Length = 105

 Score = 26.4 bits (59), Expect = 8.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 36 GPNGSGKSTLSYLLS 50
          GP G GKSTL+  L+
Sbjct: 5  GPPGCGKSTLAKYLA 19


>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
           trafficking and secretion].
          Length = 340

 Score = 26.4 bits (58), Expect = 8.6
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 4   IKNLRAKIVDTDTEIIRGLNLKVEPS-EVVAIMGPNGSGKST-----LSYLLSGHKDYEI 57
           ++    +I+    ++   L +  E    V+  +G NG GK+T       YL    K   +
Sbjct: 113 LREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172

Query: 58  TAGD 61
            AGD
Sbjct: 173 AAGD 176


>gnl|CDD|29833 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
          protein kinase/phosphatase, controls the
          phosphorylation state of the phosphocarrier protein HPr
          and regulates the utilization of carbon sources by
          gram-positive bacteria. It catalyzes both the
          ATP-dependent phosphorylation of Ser-46 of HPr and its
          dephosphorylation by phosphorolysis. The latter
          reaction uses inorganic phosphate as substrate and
          produces pyrophosphate. Phosphoenolpyruvate
          carboxykinase (PEPCK) and the C-terminal catalytic
          domain of HprK/P are structurally similar with
          conserved active site residues suggesting these two
          phosphotransferases have related functions.  The HprK/P
          N-terminal domain is structurally similar to the
          N-terminal domains of the MurE and MurF amino acid
          ligases..
          Length = 149

 Score = 26.4 bits (58), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 32 VAIMGPNGSGKSTLS 46
          V I GP+G GKS L+
Sbjct: 17 VLITGPSGIGKSELA 31


>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
           unknown].
          Length = 374

 Score = 26.2 bits (57), Expect = 9.1
 Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 25/120 (20%)

Query: 23  NLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEITAGDILYKG------ESILDW 72
           N K+    +   +GPN SGKST    L  + SG             +       E  L W
Sbjct: 15  NGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEEYLQW 74

Query: 73  ---SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
                V    KG    F         + +Q L      +  +  E  L +     +V+ I
Sbjct: 75  LQLRAVNVVEKGFRRVFG--------LNLQDLTT----RGASGEELILTVKHRRERVKYI 122


>gnl|CDD|73045 cd03286, ABC_MSH6_euk, MutS6 homolog in eukaryotes.  The MutS
          protein initiates DNA mismatch repair by recognizing
          mispaired and unpaired bases embedded in duplex DNA and
          activating endo- and exonucleases to remove the
          mismatch.  Members of the MutS family possess
          C-terminal domain with a conserved ATPase activity that
          belongs to the ATP binding cassette (ABC) superfamily. 
          MutS homologs (MSH) have been identified in most
          prokaryotic and all eukaryotic organisms examined.
          Prokaryotes have two homologs (MutS1 and MutS2),
          whereas seven MSH proteins (MSH1 to MSH7) have been
          identified in eukaryotes.  The homodimer MutS1 and
          heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
          involved in mitotic mismatch repair, whereas MSH4-MSH5
          is involved in resolution of Holliday junctions during
          meiosis.  All members of the MutS family contain the
          highly conserved Walker A/B ATPase domain, and many
          share a common mechanism of action.  MutS1, MSH2-MSH3,
          MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
          clamps, and recognition of specific DNA structures or
          lesions results in ADP/ATP exchange..
          Length = 218

 Score = 26.0 bits (57), Expect = 9.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 9  AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
                 + +   ++L      ++ + GPN  GKSTL
Sbjct: 10 LNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTL 46


>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
          [Inorganic ion transport and metabolism].
          Length = 197

 Score = 26.0 bits (57), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLL 49
          LK +   V+   G +GSGKST++  L
Sbjct: 18 LKGQKGAVIWFTGLSGSGKSTIANAL 43


>gnl|CDD|36637 KOG1423, KOG1423, KOG1423, Ras-like GTPase ERA [Cell cycle
          control, cell division, chromosome partitioning, Signal
          transduction mechanisms].
          Length = 379

 Score = 26.1 bits (57), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHK 53
          VA++G    GKSTL+  + G K
Sbjct: 75 VAVIGAPNVGKSTLTNQMIGQK 96


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,930,214
Number of extensions: 155618
Number of successful extensions: 1120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 374
Length of query: 249
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,297,318
Effective search space: 678976244
Effective search space used: 678976244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)