RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (249 letters) >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 338 bits (870), Expect = 6e-94 Identities = 142/245 (57%), Positives = 183/245 (74%), Gaps = 2/245 (0%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 L+IK+L + D EI++G+NL V+ E+ AIMGPNGSGKSTLS ++GH YE+T+G Sbjct: 1 LKIKDLHVSV--EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT 58 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 IL+KG+ +L+ ERA G+FLAFQYP EIPG+ ++FL+ ALN +R AR E+ L + D Sbjct: 59 ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118 Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181 F + ++ A LG++ + L R +N GFSGGEKK EILQM LLEP L ILDE DSGLDID Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178 Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241 ALKI A+G+N LR DRSFLIITHYQRLLNYIKPD +HVL +G+I+K+GD +A +LEE Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEK 238 Query: 242 GYAEL 246 GY + Sbjct: 239 GYDWV 243 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 309 bits (793), Expect = 4e-85 Identities = 139/249 (55%), Positives = 182/249 (73%), Gaps = 2/249 (0%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 ML IK+L + D I+RGLNL+V P EV AIMGPNGSGKSTLS L+G +DYE+T G Sbjct: 1 MLSIKDLHVSV--EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120 + +KG+ +L+ S +RA +GIF+AFQYPVEIPG+ FL+ ALN R R ++ L Sbjct: 59 TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF 118 Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180 DF + + A L + D+L R +N+GFSGGEKK +ILQM +LEP LCILDE+DSGLDI Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178 Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240 DALKI A GVN+LR RSF+I+THYQR+L+YIKPD +HVL+ G+I+K+GD+++ LEE Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE 238 Query: 241 NGYAELIKE 249 GY L ++ Sbjct: 239 QGYGWLTEQ 247 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 81.7 bits (202), Expect = 2e-16 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 31/202 (15%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 E+++GLN E EV+A++G NG+GKSTL L+G +G +L GE LD+S Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG--LLRPQSGAVLIDGEP-LDYSR 60 Query: 75 --VERASKGIFLAFQYP------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126 + + + L FQ P ++ + L + L+E R+V Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAE------------VERRV 108 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDAL 183 R+ +G + + +RP + SGGEKK IA + MR P + +LDE +GLD Sbjct: 109 REALTAVGAS-GLRERPTHC-LSGGEKKRVAIAGAVAMR---PDVLLLDEPTAGLDPAGR 163 Query: 184 KIAAQGVNALRSQDRSFLIITH 205 + + LR++ + +I TH Sbjct: 164 EQMLAILRRLRAEGMTVVISTH 185 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 81.3 bits (201), Expect = 2e-16 Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 33/241 (13%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 +LE ++L+ D TE ++G+N K E E+VA++GPNG+GKSTL +G + T+G Sbjct: 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG--ILKPTSG 57 Query: 61 DILYKGESI-LDWSIVERASKGIFLAFQYP---VEIPGI---IMMQFLKIALNEQRKARN 113 ++L KGE I D + K + + FQ P + P + + L + L+++ + Sbjct: 58 EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR 117 Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCI 170 KE L +G+ K P +L SGG+KK IA IL M+ P + + Sbjct: 118 VKEAL------------KAVGMEGFENKPPHHL--SGGQKKRVAIAGILAMK---PEIIV 160 Query: 171 LDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229 LDE SGLD + A +I + + L + + +I TH L+ + D ++V+ +GKIIK Sbjct: 161 LDEPTSGLDPMGASQI-MKLLYDLNKEGITIIISTHDVDLVP-VYADKVYVMSDGKIIKE 218 Query: 230 G 230 G Sbjct: 219 G 219 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 75.5 bits (186), Expect = 1e-14 Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 36/245 (14%) Query: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73 D + GLNL V P E VA++GP+G+GKSTL LL + Y+ +G IL G + Sbjct: 351 PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLD 408 Query: 74 IVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 E RA + L Q PV F + R R PD T + + A Sbjct: 409 PAELRAR--MALVPQDPV--------LFAASVMENIRYGR-------PDATDEEVEAAAR 451 Query: 133 LGINMDMLKR-------PLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182 + + L + SGG+++ I + L + + +LDE S LD ++ Sbjct: 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG 242 ++ Q + L + R+ LII H RL +K D I V+ G+I+ G ++ L + + G Sbjct: 512 EQLVQQALETL-MKGRTTLIIAH--RLATVLKADRIVVMDQGRIVAQGTHA-EL-IAKGG 566 Query: 243 -YAEL 246 YA L Sbjct: 567 LYARL 571 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 75.5 bits (186), Expect = 1e-14 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 21/250 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E +N+ + D + ++L +EP E VA++G +GSGKSTL L+ + YE +G Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQ 388 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118 IL G + D+++ + + L Q V I + +A E+ L Sbjct: 389 ILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAY 447 Query: 119 IPDFTRKVRK-ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177 DF K+ + +G N +L SGG+++ I + L + + ILDE S Sbjct: 448 AQDFVDKLPLGLDTPIGENGVLL--------SGGQRQRLAIARALLKDAPILILDEATSA 499 Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237 LD ++ ++ + L Q R+ L+I H RL K D I V+ +G+I++ G ++ L Sbjct: 500 LDNESERLVQAALERLM-QGRTTLVIAH--RLSTIEKADRIVVMDDGRIVERGTHNELLA 556 Query: 238 LEENG-YAEL 246 NG YA+L Sbjct: 557 --RNGLYAQL 564 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 73.9 bits (182), Expect = 4e-14 Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 22/236 (9%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 M++++N+ +++ ++ ++ ++ E VAI+G NGSGKST+S +L+G + +G Sbjct: 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSG 64 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNEKELLI 119 +I G +I ++ E K I + FQ P + G + + L ++ + + +I Sbjct: 65 EIKIDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123 Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDS 176 D +KV G+ + K P NL SGG+K+ IA +L L P + I DE+ S Sbjct: 124 DDLAKKV-------GMEDYLDKEPQNL--SGGQKQRVAIASVLA---LNPEIIIFDESTS 171 Query: 177 GLDIDALKIAAQGVNALRSQDRSFLI-ITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 LD + + + LR + LI ITH + I D + V GK+I G Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITH--DMDEAILADKVIVFSEGKLIAQGK 225 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 71.8 bits (176), Expect = 1e-13 Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 25/242 (10%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEI 57 +LE+K + + + G++L+V P E V + G NG+GKSTL +LSG H ++ Sbjct: 1 LLEMKGIVKTF--GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWD- 57 Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQ--FL--KIALNEQRKARN 113 G+I + G + +I + GI + Q +P + + + FL +I L R A N Sbjct: 58 --GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYN 115 Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173 + + + EL ++ D + RP+ + GG++++ EI + + L ILDE Sbjct: 116 A-------MYLRAKNLLRELQLDADNVTRPVG-DYGGGQQQLVEIAKALNKQARLLILDE 167 Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGD 231 S L +I + L++ + + I+H LN +K DTI V+ +G+ + T D Sbjct: 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHK---LNEVKAVCDTICVIRDGQHVATKD 224 Query: 232 YS 233 S Sbjct: 225 MS 226 Score = 32.9 bits (75), Expect = 0.074 Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 147 GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204 SGG ++ A + +M L P + ILDE G+D+ A + +N L + + ++++ Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 71.4 bits (176), Expect = 2e-13 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 25/243 (10%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E +N+ +T + ++L + P E VAI+G GSGKSTL LL G Y+ T G Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--YQPTEGS 521 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118 +L G I + + I Q P G + IAL +++E+L Sbjct: 522 VLLDGVDIRQIDPADL-RRNIGYVPQDPRLFYGTLRDN---IALG--APYADDEEILRAA 575 Query: 119 ----IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174 + +F R+ G++M + +R +L SGG+++ + + L +P + +LDE Sbjct: 576 ELAGVTEFVRRHPD-----GLDMQIGERGRSL--SGGQRQAVALARALLRDPPILLLDEP 628 Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSI 234 S +D + + + ++ +++TH LL+ + D I V+ NG+I+ G Sbjct: 629 TSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLLDLV--DRIIVMDNGRIVADGPKDQ 685 Query: 235 ALD 237 L+ Sbjct: 686 VLE 688 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 70.7 bits (173), Expect = 3e-13 Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 21/237 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEI 57 +EI++L+ E++ G+NL++ + + A+MGP+GSGKSTL + L+ + + + Sbjct: 4 IEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61 Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117 +G++ G+ I ++E + + + FQ P IP + + + + + L R +++KEL Sbjct: 62 -SGEVYLDGQDIFKMDVIE-LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119 Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLCILDET 174 +VR E D +K L+ SGG+++ I + +P + + DE Sbjct: 120 -----QERVRW-ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173 Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + LD + KI + + +D + +++TH+ + I D + L+ G+I++ G Sbjct: 174 TANLDPENTAKIESLFLEL--KKDMTIVLVTHFPQQAARIS-DYVAFLYKGQIVEWG 227 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 70.8 bits (174), Expect = 3e-13 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 53/234 (22%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 DT +++G++L + E+VAI+G +GSGKSTL +LL G + T+G++L+ G+S+ S Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSS 74 Query: 75 VERAS-KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFT---------- 123 ERA + L F Y QF L+PDFT Sbjct: 75 NERAKLRNKKLGFIY----------QF---------------HHLLPDFTALENVAMPLL 109 Query: 124 ----------RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173 + ++ ++G+ + RP L SGGE++ I + + +PSL + DE Sbjct: 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--SGGERQRVAIARALVNQPSLVLADE 167 Query: 174 TDSGLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226 LD + KI + L R + SFL++TH L K D + + +G++ Sbjct: 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK--KLDRVLEMKDGQL 219 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 70.3 bits (173), Expect = 4e-13 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 26/218 (11%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81 L+ +V E++ ++GPNG+GKSTL ++G G I + G+ + WS E A Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71 Query: 82 IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141 +L+ Q P M F + L++ K R E + ++ LG+ D L Sbjct: 72 AYLSQQQT---PPFAMPVFQYLTLHQPDKTRTEA------VASALNEVAEALGL-DDKLG 121 Query: 142 RPLNLGFSGGE----KKIAEILQM-RLLEPS--LCILDETDSGLDIDALKIAAQGVNALR 194 R +N SGGE + A +LQ+ + P+ L +LDE + LD+ + ++ L Sbjct: 122 RSVN-QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180 Query: 195 SQDRSFLIITHYQRLLN--YIKPDTIHVLHNGKIIKTG 230 Q + ++ +H LN D + +L GK++ +G Sbjct: 181 QQGIAVVMSSHD---LNHTLRHADRVWLLKQGKLLASG 215 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 70.2 bits (173), Expect = 5e-13 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 MLE +NL ++ ++ ++L + P EVVAI+GPNG+GKSTL LSG + +G Sbjct: 2 MLEARNLSVRL--GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG--ELSPDSG 57 Query: 61 DILYKGESILDWSIVERA 78 ++ G + DWS E A Sbjct: 58 EVRLNGRPLADWSPAELA 75 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 70.1 bits (172), Expect = 6e-13 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 26/239 (10%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D +++GL + P EVVA++GP+GSGKST++ LL Y+ T G +L G ++ + Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDH 550 Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-----KELLIPDFTRKVRKI 129 + + L Q PV G + IA E K DF + Sbjct: 551 HYLHRQ-VALVGQEPVLFSGSVREN---IAYGLTDTPDEEIMAAAKAANAHDFIMEFPN- 605 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189 G + ++ ++ L SGG+K+ I + + +P + ILDE S LD + Q Sbjct: 606 ----GYDTEVGEKGSQL--SGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655 Query: 190 VNALRS-QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247 + RS R+ L+I H RL + D I VL G +++ G + L ++ Y L+ Sbjct: 656 LQESRSRASRTVLLIAH--RLSTVERADQILVLKKGSVVEMGTHK-QLMEDQGCYKHLV 711 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 68.7 bits (168), Expect = 1e-12 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 27/225 (12%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIV 75 ++ ++L +E E V ++G +G GKSTL+ LL G + + G + ++G+ + LD Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE--KPAQGTVSFRGQDLYQLDRKQR 83 Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-----KELLIPDFTRKVRKIT 130 + + L FQ + P A+N + R + L D + + +I Sbjct: 84 RAFRRDVQLVFQ---DSPS---------AVNPRMTVRQIIGEPLRHLTSLDESEQKARIA 131 Query: 131 A---ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 +G+ + + L SGG+ + I + ++P L +LDE S LD+ + Sbjct: 132 ELLDMVGLRSEDADK-LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190 Query: 188 QGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + + L+ ++L ITH RL+ + V+ G+I++ D Sbjct: 191 ELLRKLQQAFGTAYLFITHDLRLVQSFC-QRVAVMDKGQIVEECD 234 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 68.9 bits (168), Expect = 1e-12 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 14/217 (6%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75 T + +NL ++ E + I+G NGSGKSTL+ L+G + G +L G D+S + Sbjct: 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKL 72 Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK-VRKITAELG 134 + K + + FQ P QF+ + E E L P RK V + AE+G Sbjct: 73 QGIRKLVGIVFQNP-------ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG 125 Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194 + + P L SGG+ + + + +EP I DE S LD D+ + + L Sbjct: 126 LEKYRHRSPKTL--SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183 Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + ++ + ITH L+ D I V+ GKI+ G+ Sbjct: 184 EKGKTIVYITHNLEELH--DADRIIVMDRGKIVLEGE 218 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 68.1 bits (167), Expect = 2e-12 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 40/245 (16%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 + ++ + +P + VAI+GP G+GKSTL LL + ++ +G IL G I V RA Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRT---VTRA 405 Query: 79 S--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 S + I + FQ F R + + PD T + + AE Sbjct: 406 SLRRNIAVVFQDA--------GLF-------NRSIEDNIRVGRPDATDEEMRAAAERAQA 450 Query: 137 MD-MLKRPLNLGF---------SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 D + ++P SGGE++ I + L +P + ILDE S LD++ Sbjct: 451 HDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510 Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG--YA 244 ++ L + R+ II H RL D I V NG+++++G + +L G +A Sbjct: 511 KAALDELM-KGRTTFIIAH--RLSTVRNADRILVFDNGRVVESGSFD---ELVARGGRFA 564 Query: 245 ELIKE 249 L++ Sbjct: 565 ALLRA 569 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 67.6 bits (166), Expect = 3e-12 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 31/221 (14%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEITAGDILYKGESILDWSIVER 77 ++LKV E+V++ G NG+GKSTL +LSG H YE G+I+++GE + +I + Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIRDT 79 Query: 78 ASKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135 GI + Q + + +++ FL NE + + +K+ A+L + Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLG---NEITPG---GIMDYDAMYLRAQKLLAQLKL 133 Query: 136 NMDMLKRPLNLGFSGGEKKIAEIL-----QMRLLEPSLCILDETDSGLDIDALKIAAQGV 190 +++ NLG G++++ EI Q RLL ILDE + L + + Sbjct: 134 DINPATPVGNLG--LGQQQLVEIAKALNKQARLL-----ILDEPTASLTESETAVLLDII 186 Query: 191 NALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKT 229 L++ + + I+H LN +K DTI V+ +G+ I T Sbjct: 187 RDLKAHGIACIYISHK---LNEVKAISDTICVIRDGRHIGT 224 Score = 29.9 bits (68), Expect = 0.70 Identities = 14/34 (41%), Positives = 21/34 (61%) Query: 149 SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182 SGG ++ A + + LL P + ILDE G+D+ A Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 67.6 bits (166), Expect = 3e-12 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 23/176 (13%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 LE+ NL + I+RG++L+V EV ++G NG GK+TL L G + +G Sbjct: 1 LEVSNLNVYY--GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGS 56 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 I GE I ERA GI Q P + + + L L R ++ IPD Sbjct: 57 IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL--AALPRRSRK--IPD 112 Query: 122 FTRKVRKITAELGINMDMLKRPL-NLGFSGGEKK---IAEILQMRLLEPSLCILDE 173 I + +ML R +L SGG+++ IA L R P L +LDE Sbjct: 113 E------IYELFPVLKEMLGRRGGDL--SGGQQQQLAIARALVTR---PKLLLLDE 157 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 66.8 bits (163), Expect = 5e-12 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 19/196 (9%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75 T+++ ++ + E++AI+G +GSGKSTL +LL G T+GD+++ G+ + S Sbjct: 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQPMSKLSSA 79 Query: 76 ERA---SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 +A ++ + +Q+ +P ++ + + L +K E + ++ A Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-------SRALEMLAA 132 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI---DALKIAAQG 189 +G+ RP L SGGE++ I + + P L + DE LD D++ Sbjct: 133 VGLEHRANHRPSEL--SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190 Query: 190 VNALRSQDRSFLIITH 205 +N R Q +FL++TH Sbjct: 191 LN--RLQGTAFLVVTH 204 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 64.8 bits (158), Expect = 2e-11 Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 34/242 (14%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76 I+ ++L ++ + I+G +GSGKSTL+ LL G ++ +G+IL G S+ D Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHT 545 Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 +L Q P G I+ L L + ++ + AE I Sbjct: 546 LRQFINYLP-QEPYIFSGSILENLL---LGAKENVSQDEIWAACEI--------AE--IK 591 Query: 137 MDMLKRPLNLG---------FSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIA 186 D+ PL SGG+K+ + + L + + ILDE+ S LD I KI Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651 Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG-YAE 245 N L QD++ + + H RL + D I VL +GKII+ G + LD NG YA Sbjct: 652 N---NLLNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQGSHDELLD--RNGFYAS 704 Query: 246 LI 247 LI Sbjct: 705 LI 706 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 63.5 bits (155), Expect = 4e-11 Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 23/211 (10%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 LE L +R ++ V P E VA++GP+G+GKSTL LL G D T G Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGS 378 Query: 62 ILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-KELL 118 I G + D S I Q+P G I R AR + + Sbjct: 379 IAVNGVPLADAD---ADSWRDQIAWVPQHPFLFAGTI--------AENIRLARPDASDAE 427 Query: 119 IPDFTRKV--RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176 I + + A L +D L G SGG+ + + + L + L +LDE + Sbjct: 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487 Query: 177 GLDIDALKIAAQGVNALR--SQDRSFLIITH 205 LD + A ALR +Q R+ L++TH Sbjct: 488 HLDAET---EALVTEALRALAQGRTVLLVTH 515 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 63.5 bits (155), Expect = 4e-11 Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 40/225 (17%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 + ++ V P E VA++GPNG+GKSTL LL+ Y G I G + R Sbjct: 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDL-------RR 67 Query: 79 SKGIFLA-----FQYPVEIPGIIMMQFLKI--ALN----EQRKARNEKELLIPDFTRKVR 127 + LA FQ P + + Q L+ AL+ + + R L + Sbjct: 68 APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD 127 Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 EL +GG ++ EI + L P+L +LDE GLD + Sbjct: 128 DKVREL---------------NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 Query: 188 QGVNAL-RSQDRSFLIITHYQRLLNYIKP-DTIHVLHNGKIIKTG 230 V AL R Q S L TH L++ I+ D + VLH G+++ G Sbjct: 173 AHVRALCRDQGLSVLWATH---LVDEIEADDRLVVLHRGRVLADG 214 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 63.0 bits (154), Expect = 8e-11 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 17/219 (7%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 + L+L V+P E+ I+GPNG+GK+T+ +++G G +L+ G + + A Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT--RPDEGSVLFGGTDLTGLPEHQIA 75 Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG--IN 136 GI FQ P + + + L++AL + L + + + E+ I Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFA---SLFFRLSAEEKDRIEEVLETIG 132 Query: 137 M-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195 + D R L S G+K+ EI + + +P L +LDE +G+ + + A+ + +L + Sbjct: 133 LADEADRLAGL-LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-A 190 Query: 196 QDRSFLIITH---YQRLLNYIKPDTIHVLHNGKIIKTGD 231 S +++ H + R + D + VLH G ++ G Sbjct: 191 GKHSVVVVEHDMEFVRSIA----DKVTVLHQGSVLAEGS 225 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 62.8 bits (153), Expect = 9e-11 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 35/227 (15%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++ ++L ++ E VA++G +G GKSTL+ LL G + + G++ ++GE + + + R Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE--SPSQGNVSWRGEPL---AKLNR 81 Query: 78 ASKGIF-----LAFQYPV-------EIPGIIM--MQFLKIALNEQRKARNEKELLIPDFT 123 A + F + FQ + + II ++ L ++L++ + E+L Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKAERLARASEML----- 135 Query: 124 RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183 R V + + KRP L SGG+ + + + +EP L ILDE S LD+ Sbjct: 136 RAV-DLDDS-----VLDKRPPQL--SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187 Query: 184 KIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229 + + L+ Q + L ITH RL+ + V+ NG+I++T Sbjct: 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM-VMDNGQIVET 233 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 62.1 bits (151), Expect = 1e-10 Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 26/237 (10%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 ++E ++L E + +N + +A++GPNG+GKSTL +G + T+G Sbjct: 3 LIETRDL-CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG--ILKPTSG 59 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120 +L +GE I +I E K + L FQ P + Q + EQ A L + Sbjct: 60 SVLIRGEPITKENIRE-VRKFVGLVFQNPDD-------QIFSPTV-EQDIAFGPINLGLD 110 Query: 121 DFT--RKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETD 175 + T +V LG+ + P +L SGGEKK IA ++ M EP + +LDE Sbjct: 111 EETVAHRVSSALHMLGLEELRDRVPHHL--SGGEKKRVAIAGVIAM---EPQVLVLDEPT 165 Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLII--THYQRLLNYIKPDTIHVLHNGKIIKTG 230 +GLD +K +N L + +I TH L+ + D I+V+ G+I+ G Sbjct: 166 AGLDPQGVKELIDFLNDL-PETYGMTVIFSTHQLDLVPEMA-DYIYVMDKGRIVAYG 220 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 62.2 bits (151), Expect = 1e-10 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 14/223 (6%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 I+ G+ P E++A++GP+GSGKSTL L+G G IL I++R Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKR 141 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 F+ Q + P + + + L +L R K L + + +ELG+ Sbjct: 142 TG---FVT-QDDILYPHLTVRETLVFCSL-----LRLPKSLTKQEKILVAESVISELGLT 192 Query: 137 M---DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193 ++ G SGGE+K I L+ PSL ILDE SGLD A + +L Sbjct: 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252 Query: 194 RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236 + ++ + H Y D++ VL G+ + G S A+ Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 62.1 bits (151), Expect = 1e-10 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 20/249 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 + +N+R + E++ LNL ++P E + I+GP+GSGKSTL+ LL + Y G Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQ 513 Query: 62 ILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKEL 117 +L G +D +I + A + + + Q V I + + K Sbjct: 514 VLVDG---VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLA 570 Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177 DF ++ + G N ++ ++ NL SGG+++ I + + P + I DE S Sbjct: 571 GAHDFISELPQ-----GYNTEVGEKGANL--SGGQRQRIAIARALVGNPRILIFDEATSA 623 Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237 LD ++ + + + + + R+ +II H RL D I VL G+I ++G + L Sbjct: 624 LDYESEALIMRNMREI-CRGRTVIIIAH--RLSTVRACDRIIVLEKGQIAESGRHEELLA 680 Query: 238 LEENGYAEL 246 L+ YA L Sbjct: 681 LQGL-YARL 688 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 61.5 bits (149), Expect = 2e-10 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 21/237 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT--- 58 +E++NL D I++ +NL + + V A++GP+G GKST L+ D Sbjct: 4 IEVENLNTYF--DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61 Query: 59 AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117 G I G I D ++ V K + + FQ P P I F +A + +++ Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSI---FDNVAYGLRIHGEDDE-- 116 Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDET 174 DF + + + + D +K L+ LG SGG+++ I + + P + ++DE Sbjct: 117 ---DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173 Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 S LD I KI ++ L+ +D + +I+TH + + T L+ G+II++G Sbjct: 174 CSALDPISTTKIEDL-IHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLN-GEIIESG 227 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 61.2 bits (149), Expect = 3e-10 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 28/226 (12%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80 +NL+V E+V+++GPNG+GK+T+ L+G Y+ T G IL +G+ I + A Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIARM 80 Query: 81 GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL-IPDFTRKVRKITA-------E 132 G+ FQ+ + +++ L +A ++Q K LL P F R + Sbjct: 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER 140 Query: 133 LGINMDMLKRPL-NLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL------DIDALKI 185 +G+ ++ R NL + G+++ EI + + +P + +LDE +GL ++D L Sbjct: 141 VGL-LEHANRQAGNLAY--GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL-- 195 Query: 186 AAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + LR++ + + L+I H +L+ I D I+V++ G + G Sbjct: 196 ----IAELRNEHNVTVLLIEHDMKLVMGIS-DRIYVVNQGTPLANG 236 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 59.6 bits (145), Expect = 7e-10 Identities = 69/263 (26%), Positives = 127/263 (48%), Gaps = 47/263 (17%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E +N+ + +R +N K+ + VA++G +GSGKST++ LL+ + Y+I G+ Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGE 399 Query: 62 ILYKGESILDWSI------VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 IL G + D+++ V S+ + L F N AR E+ Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHL---------------FNDTIANNIAYARTEQ 444 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGF-----------SGGEKKIAEILQMRLL 164 ++R+ + A + MD + + ++ G SGG+++ I + L Sbjct: 445 ------YSREQIEEAARMAYAMDFINK-MDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224 + + ILDE S LD ++ + ++ L+ ++R+ L+I H RL K D I V+ +G Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAH--RLSTIEKADEILVVEDG 554 Query: 225 KIIKTGDYSIALDLEENG-YAEL 246 +I++ G ++ L L +NG YA+L Sbjct: 555 EIVERGTHA-EL-LAQNGVYAQL 575 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 59.5 bits (144), Expect = 8e-10 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 22/201 (10%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESI 69 + ++ +NL + +EV AI+GP+G GKST Y+ + ++ E+ T G ILY+ ++I Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKST--YIKTLNRMVELVPSVKTTGKILYRDQNI 93 Query: 70 LDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 D S VE + + FQ P P I + + + +K+ L + +R Sbjct: 94 FDKSYSVEELRTNVGMVFQKPNPFPKSI---YDNVTYGPKIHGIKDKKTLDEIVEKSLRG 150 Query: 129 ITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALK 184 D LK L+ G SGG+++ I + +EP + ++DE S LD I LK Sbjct: 151 AAI-----WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205 Query: 185 IAAQGVNALRSQDRSFLIITH 205 + + V L+ +D S +I+TH Sbjct: 206 V-EELVQELK-KDYSIIIVTH 224 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 58.2 bits (141), Expect = 2e-09 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 26/225 (11%) Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72 D +++ +NL V VA++G GSGKSTL+ LL G+ Y +T G+I G + Sbjct: 351 RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSL 408 Query: 73 S-IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131 S V R +G+ + Q PV + + L R+ E + V+ A Sbjct: 409 SHSVLR--QGVAMVQQDPVVLADTF---LANVTL-----GRDISEEQVWQALETVQ--LA 456 Query: 132 EL------GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185 EL G+ + ++ NL S G+K++ + ++ + P + ILDE + +D + Sbjct: 457 ELARSLPDGLYTPLGEQGNNL--SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514 Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 Q + A+R + ++I H RL ++ DTI VLH G+ ++ G Sbjct: 515 IQQALAAVREHT-TLVVIAH--RLSTIVEADTILVLHRGQAVEQG 556 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 57.9 bits (140), Expect = 3e-09 Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEI 57 +E NLR + +I+G++LK+ + V A+MGP+G GKSTL + LL +++ + Sbjct: 5 IETVNLR--VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62 Query: 58 TAGDILYKGESILDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116 G++ G +I + + + + FQYP P + + + I + +++KE Sbjct: 63 -EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121 Query: 117 LLIPDFTRKVRKITAELGINMDMLK-RPLNLGFSGGEKK---IAEILQMRLLEPSLCILD 172 L + K A D L P NL SGG+++ IA L M+ P + ++D Sbjct: 122 L--DERVEWALKKAALWDEVKDRLNDYPSNL--SGGQRQRLVIARALAMK---PKILLMD 174 Query: 173 ETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 E + +D + + L+ ++ + +++TH + D + L+ GK+I+ G Sbjct: 175 EPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVS-DYVAFLYLGKLIEVG 230 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 57.6 bits (139), Expect = 3e-09 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 15/216 (6%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 + ++ + + + VAI+GP G+GK+TL LL + Y+ T G IL G +D + V R Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG---IDINTVTRE 405 Query: 79 S--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 S K I FQ + + ++ + R+ ++E+ + Sbjct: 406 SLRKSIATVFQ-----DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNG 460 Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196 D L SGGE++ I + L + +LDE S LD++ ++ALR + Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K 519 Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232 +R+ II H RL D + L G++I+ G + Sbjct: 520 NRTTFIIAH--RLSTVRNADLVLFLDQGRLIEKGSF 553 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 57.4 bits (139), Expect = 4e-09 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 48/228 (21%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 +RG++ +++ E +AI+GP+GSGKSTL+ L+ G T+G + G + W +R Sbjct: 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQW---DR 387 Query: 78 ASKGIFLAFQYPVEI---PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV--RKITA- 131 + G + + P ++ PG + A N I F KI Sbjct: 388 ETFGKHIGY-LPQDVELFPGTV--------------AEN-----IARFGENADPEKIIEA 427 Query: 132 -------ELGINM----DMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGL 178 EL + + D + P SGG+++ I R L +P L +LDE +S L Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ--RIALARALYGDPKLVVLDEPNSNL 485 Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226 D + + A + AL+++ + ++ITH LL + D I VL +G+I Sbjct: 486 DEEGEQALANAIKALKARGITVVVITHRPSLLGCV--DKILVLQDGRI 531 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 57.3 bits (138), Expect = 4e-09 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 16/198 (8%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILD 71 D ++G+++++E VVA +GP+G GKST L + D G+I G +I D Sbjct: 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 Query: 72 WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 + V+ K + + FQ P P I F +A + + F R+ + T Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPKSI---FENVAYGLRVNGVKDNA-----FIRQRVEET 126 Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 + D +K L SGG+++ I + + PS+ ++DE S LD + Sbjct: 127 LKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE 186 Query: 188 QGVNALRSQDRSFLIITH 205 + ++ L+ +D + +I+TH Sbjct: 187 ELIHELK-KDYTIVIVTH 203 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 57.1 bits (138), Expect = 5e-09 Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 33/219 (15%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSY---LLSGHKDYEI 57 +E+KNL K ++ G++L+V+P EVVAI+GP+GSGK+TL LL + I Sbjct: 3 AIEVKNLVKKF--HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60 Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE--- 114 GDI +D + KG+ + V G + F L R Sbjct: 61 RVGDI------TIDTARSLSQQKGLIRQLRQHV---GFVFQNF---NLFPHRTVLENIIE 108 Query: 115 -----KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEP 166 K + T + R++ A++G+ P L SGG+++ IA L MR P Sbjct: 109 GPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRL--SGGQQQRVAIARALAMR---P 163 Query: 167 SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205 + + DE S LD + + + L + R+ +I+TH Sbjct: 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 56.5 bits (137), Expect = 6e-09 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 34/219 (15%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT--- 58 +EI+NL + + E ++ +NL + ++V A++GP+G GKSTL L S ++ ++ Sbjct: 2 IEIENL--NLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTL--LRSLNRMNDLVPGV 57 Query: 59 --AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 G +L+ G+ I D I V + + + FQ P P M + IA + +K Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP---MSIYDNIAYGPRLHGIKDK 114 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLC 169 + + V + + + D +K L+ LG SGG+++ IA L + EP + Sbjct: 115 K----ELDEIVEESLKKAAL-WDEVKDRLHDSALGLSGGQQQRLCIARALAV---EPEVL 166 Query: 170 ILDETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITH 205 +LDE S LD IA + L + + +I+TH Sbjct: 167 LLDEPTSALD----PIATGKIEELIQELKKKYTIVIVTH 201 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 56.5 bits (136), Expect = 6e-09 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 27/241 (11%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEI 57 +LE+K+L I + + +++ +E V A++GP+G GKST ++ D Sbjct: 21 ILEVKDL--SIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78 Query: 58 TAGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGII---MMQFLKIALNEQRKARN 113 + G+ILY+G +ILD +I V + I + FQ P P I + LK A E+RK+ Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA-GERRKS-- 135 Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCI 170 ++ + + A D L L SGG+++ IA L M+ P++ + Sbjct: 136 ----VLDEIVEESLTKAALWDEVKDRLHSSA-LSLSGGQQQRLCIARTLAMK---PAVLL 187 Query: 171 LDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229 LDE S LD I KI + L+ ++ S +I+TH + + T L NG +++ Sbjct: 188 LDEPASALDPISNAKIEEL-ITELK-EEYSIIIVTHNMQQALRVSDRTAFFL-NGDLVEY 244 Query: 230 G 230 Sbjct: 245 D 245 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 56.4 bits (136), Expect = 7e-09 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%) Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82 +L V E+VAIMGP+G+GKSTL L++G E +G I +S + +R + Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFI--EPASGSIKVNDQSHTGLAPYQRP---V 72 Query: 83 FLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR 142 + FQ + + Q + + L+ K E++ KV ++GI + + Sbjct: 73 SMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQ-------EKVVDAAQQVGIADYLDRL 125 Query: 143 PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD----IDALKIAAQGVNALRSQDR 198 P L SGG+++ + + + + +LDE S LD + L + Q + R Sbjct: 126 PEQL--SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ---LCSERQR 180 Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + L++TH+ I I V+ GKI D Sbjct: 181 TLLMVTHHLSDARAIA-SQIAVVSQGKIKVVSD 212 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 56.3 bits (136), Expect = 7e-09 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 M+E KN+ T+++ ++L ++ EVV I+GP+GSGKSTL L +K EIT+G Sbjct: 1 MIEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTL--LRCINKLEEITSG 56 Query: 61 DILYKGESILDWSIVER 77 D++ G + D + ER Sbjct: 57 DLIVDGLKVNDPKVDER 73 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 56.2 bits (136), Expect = 8e-09 Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 51/249 (20%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 L+I ++ DT T + +L + + A +G NGSGKS L+ L+G E+ Sbjct: 3 SLQISQGTFRLSDTKTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAG----EL--- 53 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120 L GE +S + R L+F+ Q K+ RN ++L P Sbjct: 54 -PLLSGERQSQFSHITR------LSFE-----------QLQKLV--SDEWQRNNTDMLSP 93 Query: 121 ---DFTRKVRKI--------------TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRL 163 D R +I + GI +L R S GE + + Q + Sbjct: 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGI-TALLDRRFKY-LSTGETRKTLLCQALM 151 Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF-LIITHYQRLLNYIKPDTIHVLH 222 EP L ILDE GLD+ + + A+ + +L + L++ + + +++ VL Sbjct: 152 SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFV--QFAGVLA 209 Query: 223 NGKIIKTGD 231 + + +TG+ Sbjct: 210 DCTLAETGE 218 Score = 43.1 bits (102), Expect = 7e-05 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 21/174 (12%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY-----KGESI 69 D I+ L+ +V P E I+GPNG+GKSTL L++G + L+ GE+I Sbjct: 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 Query: 70 LDWSIVER---ASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEKELLIPDFTRK 125 W I + S + L ++ + +I+ F I + + R +K Sbjct: 332 --WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQK---------L 380 Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 ++ LGI+ P + S G++++A I++ + P+L ILDE GLD Sbjct: 381 AQQWLDILGIDKRTADAPFH-SLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 55.7 bits (134), Expect = 1e-08 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 29/245 (11%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA- 59 ++EI+N A + + ++ + +K+ +++ AI+GP+G GK+TL ++ D I Sbjct: 3 IIEIENFSAYY--GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND-HIPGF 59 Query: 60 ---GDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 G I +KG+ I D + V K + + FQ P P M + +A + K Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP---MSIYDNVAFGPRIHGVKSK 116 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILD 172 L R V + + + D +K LN SGG+++ I + +EP + +LD Sbjct: 117 HKL----DRIVEESLKKAAL-WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171 Query: 173 ETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIK 228 E S LD IA Q + L S++ + +I+TH + I+ D I ++ G++I+ Sbjct: 172 EPTSALD----PIATQRIEKLLEELSENYTIVIVTH--NIGQAIRIADYIAFMYRGELIE 225 Query: 229 TGDYS 233 G Sbjct: 226 YGPTR 230 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 55.4 bits (134), Expect = 1e-08 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 42/244 (17%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---IT 58 + ++++ + D T ++ ++ V E VAI+G NGSGKSTL+ LL+G E IT Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65 Query: 59 AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQF--------LKIALNEQRK 110 G ++ E++ W + + + + FQ P QF + L Sbjct: 66 VGGMVLSEETV--WDVRRQ----VGMVFQNPDN-------QFVGATVQDDVAFGLENIGV 112 Query: 111 ARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPS 167 R E +V + ++G+ + + P L SGG+K+ IA +L ++ P Sbjct: 113 PREE-------MVERVDQALRQVGMEDFLNREPHRL--SGGQKQRVAIAGVLALQ---PD 160 Query: 168 LCILDETDSGLDIDALKIAAQGVNALRSQDR-SFLIITHYQRLLNYIKPDTIHVLHNGKI 226 + ILDE S LD + + V L+ Q + L ITH L + D + V++ G+I Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH--DLDEAAQADRVIVMNKGEI 218 Query: 227 IKTG 230 ++ G Sbjct: 219 LEEG 222 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 55.4 bits (133), Expect = 1e-08 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 10/194 (5%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---ITAGDILYKGESILDW 72 ++ I G+++ + ++V AI+GP+G GKST L+ + E G + + G++I D Sbjct: 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 Query: 73 SI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131 I + R + I + FQ P P M + +A + A+ + + + K A Sbjct: 80 RININRLRRQIGMVFQRPNPFP---MSIYENVAYGVRISAKLPQ-ADLDEIVESALKGAA 135 Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191 D L + LG SGG+++ I + ++P + ++DE S LD A + ++ Sbjct: 136 LWQEVKDKLNKSA-LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH 194 Query: 192 ALRSQDRSFLIITH 205 +LRS+ + I+TH Sbjct: 195 SLRSE-LTIAIVTH 207 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 55.2 bits (134), Expect = 2e-08 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 MLE +NL A D + + GL+ + E+V I GPNG+GK++L +L+G + AG Sbjct: 1 MLEARNL-ACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AG 56 Query: 61 DILYKGESI 69 ++L++GE I Sbjct: 57 EVLWQGEPI 65 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 54.7 bits (131), Expect = 2e-08 Identities = 55/224 (24%), Positives = 111/224 (49%), Gaps = 19/224 (8%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEITAGDILYKGESIL 70 D I++ + +K+ + + IMGP+GSGKST L+ L+ + G +LY G+ I Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 Query: 71 DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKELLIPDFTRKVRKI 129 + + K + + FQ P P + + + L K + E + ++ + RKV + Sbjct: 82 QIDAI-KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV-GL 139 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189 E+ D L P + SGG+++ I + L+P + ++DE S +DI + +Q Sbjct: 140 WKEV---YDRLNSPAS-QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI----VNSQA 191 Query: 190 VNALRSQ---DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + L ++ + + +I++H + + + D + L+NG++++ G Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVA-DYVAFLYNGELVEWG 234 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 54.9 bits (133), Expect = 2e-08 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 18/206 (8%) Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL 63 +KN+ K D I+ LNL +E ++ AI+G +GSGKSTL ++ + ++ +G + Sbjct: 1 LKNISKKF--GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVY 56 Query: 64 YKGESILDWSIVE----RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI 119 G+ + + R K +L FQ I + + L + L ++ ++ EK Sbjct: 57 LNGKETPPLNSKKASKFRREKLGYL-FQNFALIENETVEENLDLGLKYKKLSKKEKR--- 112 Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 K ++ ++G+N+ + ++ L SGGE++ + + L +P L + DE LD Sbjct: 113 ----EKKKEALEKVGLNLKLKQKIYEL--SGGEQQRVALARAILKDPPLILADEPTGSLD 166 Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205 + L + ++ +I+TH Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTH 192 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 54.6 bits (132), Expect = 2e-08 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 3/69 (4%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 MLE++NL +K+ + ++ +NL + P E VAI+GP+G+GKSTL L ++ E ++G Sbjct: 1 MLEVENL-SKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTL--LRCINRLVEPSSG 57 Query: 61 DILYKGESI 69 IL +G I Sbjct: 58 SILLEGTDI 66 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 54.3 bits (131), Expect = 3e-08 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 36/227 (15%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D + + G+N KV EV +GPNG+GK+T +L+ Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT----------------------- 41 Query: 75 VERASKGIFLAFQY-----PVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRKVR 127 + R + G Y P ++ I + +++E R E++ + + Sbjct: 42 LLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEA 101 Query: 128 KITAELGINM----DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183 + AE + + + RP+ +SGG ++ +I + +P + LDE +GLD Sbjct: 102 EERAEELLELFELGEAADRPVG-TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + + AL+ + + L+ THY + + D I ++ +G+II G Sbjct: 161 RAIWDYIRALKEEGVTILLTTHYMEEADKLC-DRIAIIDHGRIIAEG 206 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 54.3 bits (131), Expect = 3e-08 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 29/225 (12%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWS 73 E+++G++ + EV A++G NG+GKSTL +++G I G + G + Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG-----IVPPDSGTLEIGGNPCARLT 79 Query: 74 IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL 133 + GI+L Q P+ P + + + I ++ + +K++++ A L Sbjct: 80 PAKAHQLGIYLVPQEPLLFPNLSVKE--NILFGLPKRQASM---------QKMKQLLAAL 128 Query: 134 G--INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191 G +++D L + +++I EIL+ + + + ILDE + L + + Sbjct: 129 GCQLDLDSSAGSLEV----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184 Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII---KTGDYS 233 L +Q + I+H + + D I V+ +G I KT D S Sbjct: 185 ELLAQGVGIVFISHKLPEIRQLA-DRISVMRDGTIALSGKTADLS 228 Score = 30.8 bits (70), Expect = 0.37 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 36/197 (18%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76 E R ++L+V E++ + G G+G++ L+ L G + G I+ G+ I S + Sbjct: 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALSTAQ 334 Query: 77 RASKGIFLAFQYPVEIP------GIIMMQFLKIAL--NEQRKARNEKELLI-PDFTRKV- 126 R ++G+ V +P G+ +L L N N + I P V Sbjct: 335 RLARGL-------VYLPEDRQSSGL----YLDAPLAWNVCALTHNRRGFWIKPARENAVL 383 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLE--PSLCILDETDSGLDIDAL- 183 + L I + ++ SGG ++ ++L + LE P L I+DE G+D+ A Sbjct: 384 ERYRRALNIKFNHAEQAAR-TLSGGNQQ--KVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 Query: 184 -------KIAAQGVNAL 193 IAAQ V L Sbjct: 441 DIYQLIRSIAAQNVAVL 457 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 54.3 bits (131), Expect = 3e-08 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 15/162 (9%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI-VERASK 80 +N+++E E V ++G GSGKSTL L+G + T+G I+ G I D + + K Sbjct: 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLSDIRK 83 Query: 81 GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDML 140 + L FQYP E IA +E+E+ +V++ +G++ + Sbjct: 84 KVGLVFQYP-EYQLFEETIEKDIAFGPINLGLSEEEI-----ENRVKRAMNIVGLDYEDY 137 Query: 141 KRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD 179 K SGG+K+ IA ++ M EP + ILDE +GLD Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAM---EPKILILDEPTAGLD 176 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 54.3 bits (131), Expect = 3e-08 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 33/188 (17%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D I + +NL + E V +GP+G GKSTL +++G +D IT+GD+ + + D Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMND--- 69 Query: 75 VERASKGIFLAFQYPVEIPGIIM---MQF-LKIALNEQRKARNEKELLIPDFTRKVRKIT 130 V A +G+ + FQ P + + M F LK+A + E ++V ++ Sbjct: 70 VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA----GAKKEEIN-------QRVNQVA 118 Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190 L + + ++P L SGG+++ I + + EPS+ +LDE S LD Sbjct: 119 EVLQLAHLLDRKPKAL--SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA---------- 166 Query: 191 NALRSQDR 198 ALR Q R Sbjct: 167 -ALRVQMR 173 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 54.2 bits (130), Expect = 3e-08 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++ L+L++E E++A++G +G GK+TL ++G G I D + Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR---DLTHAPP 76 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137 +G+ L FQ P + + + L Q+ + D +V +G+ Sbjct: 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-------ADIAERVADALKLVGLGD 129 Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL--RS 195 P L SGG ++ I + +EP + +LDE S LD + + + AL Sbjct: 130 AAAHLPAQL--SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187 Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYA 244 + + L +TH + D ++ +G++ G+ D +G+A Sbjct: 188 PELTILCVTH-DQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFA 235 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 54.1 bits (130), Expect = 4e-08 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 40/206 (19%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++ ++L V E+V ++GPNG+GK+T Y++ G + AG+I+ E I + R Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHAR 75 Query: 78 ASKGIFLAFQYPVEIPGII--------MMQFLKIALN---EQRKARNEKELLIPDFTRKV 126 A +GI Y + I +M L+I + EQR+ R + L+ +F Sbjct: 76 ARRGI----GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE--LMEEF---- 125 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD----IDA 182 +++ L+ + SGGE++ EI + P +LDE +G+D ID Sbjct: 126 ---------HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176 Query: 183 LKIAAQGVNALRSQDRSFLIITHYQR 208 +I + LR LI H R Sbjct: 177 KRI----IEHLRDSGLGVLITDHNVR 198 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 54.0 bits (130), Expect = 4e-08 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 24/204 (11%) Query: 33 AIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPV-E 91 +I+G NGSGKST++ L+ G + +G+I Y ++I D + + K I + FQ P + Sbjct: 39 SIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEK-LRKHIGIVFQNPDNQ 95 Query: 92 IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR----PLNLG 147 G I+ + L +P ++ + +E +DML+R P L Sbjct: 96 FVGSIVKYDVAFGLENH---------AVP--YDEMHRRVSEALKQVDMLERADYEPNAL- 143 Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLI-ITHY 206 SGG+K+ I + L PS+ ILDE S LD DA + V ++S+ +I ITH Sbjct: 144 -SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201 Query: 207 QRLLNYIKPDTIHVLHNGKIIKTG 230 L ++ D + V++ G + K G Sbjct: 202 -DLSEAMEADHVIVMNKGTVYKEG 224 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 53.7 bits (130), Expect = 4e-08 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 L + N+ D +++GL+L+++ E VA++G G GKSTL LL+ + ++ G+ Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGE 396 Query: 62 ILYKGESILDWS 73 IL G+ I D+S Sbjct: 397 ILLNGQPIADYS 408 Score = 48.7 bits (117), Expect = 1e-06 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 20/112 (17%) Query: 142 RPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL---RS 195 R L SGGE++ IA L L + L +LDE GLD + + L + Sbjct: 474 RQL----SGGEQRRLGIARAL---LHDAPLLLLDEPTEGLD----AETERQILELLAEHA 522 Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247 Q+++ L+ITH RL + D I V+ NG+II+ G + L ++ Y +L Sbjct: 523 QNKTVLMITH--RLTGLEQFDRICVMDNGQIIEQGTHQ-ELLAQQGRYYQLK 571 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 53.7 bits (129), Expect = 5e-08 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 M EI+ EI++ +++K E + I+GP+G+GKSTL L++ + + T G Sbjct: 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEG 58 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120 IL G I +++ K I + FQ P G + K + + EK + + Sbjct: 59 SILIDGVDIKTIDVIDLRRK-IGMVFQQPHLFEGTV-----KDNIEYGPMLKGEKNVDVE 112 Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180 + V G+N + R + SGGE + I + P + +LDE S LD Sbjct: 113 YYLSIV-------GLNKEYATRDVK-NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164 Query: 181 DALKIAAQGVNALRSQ-DRSFLIITH 205 + +I + + L+++ + + + ITH Sbjct: 165 TSTEIIEELIVKLKNKMNLTVIWITH 190 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 53.2 bits (128), Expect = 6e-08 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 26/249 (10%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E+++L + D T+ ++GL+L + A++GPNG+GKSTL LL + Y G Sbjct: 5 IEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTL--LLHLNGIYLPQRGR 61 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 + G + + SK + L FQ P + + +A ++ E+ Sbjct: 62 VKVMGREVNAENEKWVRSK-VGLVFQDP-DDQVFSSTVWDDVAFGPVNMGLDKDEVE--- 116 Query: 122 FTRKVRKITAELGINMDML--KRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDS 176 R+V A + M K P +L + G+KK IA +L M +P + +LDE + Sbjct: 117 --RRVE--EALKAVRMWDFRDKPPYHLSY--GQKKRVAIAGVLAM---DPDVIVLDEPMA 167 Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236 LD + + ++ L +Q ++ ++ TH L D + VL G+++ GD S+ Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA-DQVIVLKEGRVLAEGDKSLLT 226 Query: 237 D---LEENG 242 D +E+ G Sbjct: 227 DEDIVEQAG 235 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 52.8 bits (127), Expect = 8e-08 Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 55/259 (21%) Query: 1 MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS--TLSYL-LSGHKDY 55 +L I+NL T ++ ++L++E E +A++G +GSGKS LS L L Sbjct: 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPV 64 Query: 56 EITAGDILYKGESILDWSIVERASKG-----IFLAFQYPVEIPGIIMMQFLKIALNEQRK 110 +GDI + GES+L S E+ +G I + FQ P+ ++LN Sbjct: 65 VYPSGDIRFHGESLLHAS--EQTLRGVRGNKIAMIFQEPM------------VSLNPLHT 110 Query: 111 ARNEKELL-IPDFTRKVRKITAELGINMDMLKR-------------PLNLGFSGGEKKIA 156 EK+L + R +R+ A I ++ L R P L SGGE++ Sbjct: 111 L--EKQLYEVLSLHRGMRREAARGEI-LNCLDRVGIRQAAKRLTDYPHQL--SGGERQRV 165 Query: 157 EILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNY 212 I L P L I DE + LD+ + AQ + LR + L ITH L+ Sbjct: 166 MIAMALLTRPELLIADEPTTALDV---SVQAQILQLLRELQQELNMGLLFITHN---LSI 219 Query: 213 IK--PDTIHVLHNGKIIKT 229 ++ D + V+ NG+ ++ Sbjct: 220 VRKLADRVAVMQNGRCVEQ 238 Score = 44.7 bits (106), Expect = 2e-05 Identities = 61/256 (23%), Positives = 123/256 (48%), Gaps = 46/256 (17%) Query: 1 MLEIKNLR----------AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LS 46 +L+++ L+ + VD + +++ ++ + P E + ++G +GSGKST L Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNV-VVKNISFTLRPGETLGLVGESGSGKSTTGLALL 333 Query: 47 YLLSGHKDYEITAGDILYKGESILDWSIVERA----SKGIFLAFQYPVEI--PGIIMMQF 100 L++ + G+I + G+ + + + R I + FQ P P + ++Q Sbjct: 334 RLIN-------SQGEIWFDGQPLHNLN--RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 Query: 101 LKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEIL 159 ++ L + + + ++V + E+G++ + R P FSGG+++ I Sbjct: 385 IEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDPETRHRYPAE--FSGGQRQRIAIA 437 Query: 160 QMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS-QDR---SFLIITHYQRLLNYIKP 215 + +L+PSL ILDE S LD + AQ + L+S Q + ++L I+H ++ + Sbjct: 438 RALILKPSLIILDEPTSSLD---KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH 494 Query: 216 DTIHVLHNGKIIKTGD 231 I VL G++++ GD Sbjct: 495 QVI-VLRQGEVVEQGD 509 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 52.7 bits (126), Expect = 9e-08 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 13/221 (5%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD----YEITAGDILYKGESIL 70 + E + G++L E E+ A++GP+G GKST L+ D +IT G+I ++G++I Sbjct: 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT-GEIKFEGQNIY 74 Query: 71 DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 + + K + + FQ P P + + +A + +KE LI + K Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFPFSV---YDNVAYGLKIAGVKDKE-LIDQRVEESLKQ 130 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189 A D L R FSGG+++ I + + P + +LDE S LD + + Sbjct: 131 AAIWKETKDNLDRNAQ-AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189 Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + L+ +F+++TH + I D L NG +I+ G Sbjct: 190 LMELK-HQYTFIMVTHNLQQAGRIS-DQTAFLMNGDLIEAG 228 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 52.5 bits (127), Expect = 1e-07 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 10/93 (10%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 L+++ +R K D T++I+G++L V E + ++GP+G GKSTL +++G + IT+G Sbjct: 3 GLKLQAVR-KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSG 59 Query: 61 DILYKGESILDWSIVERASKGIFLAFQ----YP 89 +I G + + +E A + I + FQ YP Sbjct: 60 EIWIGGRVVNE---LEPADRDIAMVFQNYALYP 89 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 52.6 bits (127), Expect = 1e-07 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 MLE ++L V + GL+ + E + + GPNGSGK+TL L++G AG Sbjct: 2 MLEGEDLAC--VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAG 57 Query: 61 DILYKGESILDWSIVERA 78 I G I D + E Sbjct: 58 TIKLDGGDIDDPDVAEAC 75 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 52.0 bits (125), Expect = 1e-07 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 53/241 (21%) Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72 TD + +N ++P +++ I GP GSGKSTL L+ H ++++ GDI + + Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKL 382 Query: 73 SIVERASKGIFLAF--QYPVEIPGIIMMQFL-------KIALNEQRKARNEKELLIPDFT 123 + S+ LA Q P FL IAL PD T Sbjct: 383 QLDSWRSR---LAVVSQTP----------FLFSDTVANNIALGR------------PDAT 417 Query: 124 RKVRKITAELG-INMDMLKRP----LNLG-----FSGGEKKIAEILQMRLLEPSLCILDE 173 ++ + A L ++ D+L+ P +G SGG+K+ I + LL + ILD+ Sbjct: 418 QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477 Query: 174 TDSGLDIDALKIAAQGVNALRS--QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 S +D + Q ++ LR + R+ +I H RL + I V+ +G I + G+ Sbjct: 478 ALSAVD---GRTEHQILHNLRQWGEGRTVIISAH--RLSALTEASEILVMQHGHIAQRGN 532 Query: 232 Y 232 + Sbjct: 533 H 533 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 52.1 bits (125), Expect = 1e-07 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 23/227 (10%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILD 71 D + + ++L+ E ++V A++GP+G GKST L+ D G+IL GE+I D Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 Query: 72 WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 + V + + + FQ P P I F +A + +K L R +R Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFPKSI---FENVAYGLRVNGVKDKAYLAERVERSLRH-- 132 Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 A L D +K L+ LG SGG+++ I + +EP + ++DE S LD IA Sbjct: 133 AAL---WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD----PIAT 185 Query: 188 QGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 Q + L + +I+TH + + D + GK+I+ G Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVS-DVTAFFYMGKLIEVGP 231 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 52.2 bits (125), Expect = 1e-07 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 19/210 (9%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 +L+++ L D T ++G+N+ ++ EV AI+G NG+GKSTL L+G + ++G Sbjct: 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSG 61 Query: 61 DILYKGESILDWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118 IL+ G+ I D+S + + + + + FQ P Q ++ Q + L Sbjct: 62 RILFDGKPI-DYSRKGLMKLRESVGMVFQDPDN-------QLFSASV-YQDVSFGAVNLK 112 Query: 119 IP--DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176 +P + ++V GI + LK S G+KK I + ++EP + +LDE + Sbjct: 113 LPEDEVRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170 Query: 177 GLD-IDALKIAAQGVNALRSQDRSFLIITH 205 GLD + +I V + + +I TH Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 51.7 bits (124), Expect = 2e-07 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 25/219 (11%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI---VER 77 +NL +E A +G GSGKST+ LL+G + T G + I S +++ Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKDIKQ 82 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 K + L FQ+P + LK +A Q +++E R+ A +GI+ Sbjct: 83 IRKKVGLVFQFPES--QLFEETVLKDVAFGPQNFGVSQEEA-----EALAREKLALVGIS 135 Query: 137 MDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192 + ++ P L SGG+ + IA IL M EP + +LDE +GLD K Sbjct: 136 ESLFEKNPFEL--SGGQMRRVAIAGILAM---EPKILVLDEPTAGLDPKGRKELMTLFKK 190 Query: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230 L + +++TH + NY D ++VL GK++ +G Sbjct: 191 LHQSGMTIVLVTHLMDDVANY--ADFVYVLEKGKLVLSG 227 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 51.8 bits (124), Expect = 2e-07 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 14/197 (7%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESI 69 + E ++ +N + V AI+GP+G GKST +L + ++ ++ T G +++ GE I Sbjct: 51 EFEAVKKVNADILSKYVTAIIGPSGCGKST--FLRAINRMNDLIPSCHTTGALMFDGEDI 108 Query: 70 LDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 E K I + FQ P P I F IA + N+K+ L + +RK Sbjct: 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSI---FDNIAYGPRLHGINDKKQLEEIVEKSLRK 165 Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188 ++ D L + LG SGG+++ + + +EP + +LDE S LD A Sbjct: 166 AALWDEVS-DRLDKNA-LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED 223 Query: 189 GVNALRSQDRSFLIITH 205 + LR + +I+TH Sbjct: 224 LIQELRGS-YTIMIVTH 239 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 51.6 bits (124), Expect = 2e-07 Identities = 62/256 (24%), Positives = 115/256 (44%), Gaps = 41/256 (16%) Query: 1 MLEIKNLRA--KIVDTDT---------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49 +LE+ +L+ I D + + G+ L++ E + ++G +G GKST + + Sbjct: 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 67 Query: 50 SGHKDYEITAGDILYKGESILDWSIVER--ASKGIFLAFQYPVE------IPGIIMMQFL 101 G + T G++ + G+ +L E I + FQ P+ G I+ + L Sbjct: 68 IGL--VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQ 160 + + + + +V+ + ++G+ +++ R P FSGG+ + I + Sbjct: 126 RTYHPKLSRQ---------EVKDRVKAMMLKVGLLPNLINRYPHE--FSGGQCQRIGIAR 174 Query: 161 MRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPD 216 +LEP L I DE S LD+ I AQ VN L+ R S + I H ++ +I D Sbjct: 175 ALILEPKLIICDEPVSALDV---SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS-D 230 Query: 217 TIHVLHNGKIIKTGDY 232 + V++ G ++ G Y Sbjct: 231 RVLVMYLGHAVELGTY 246 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 51.5 bits (124), Expect = 2e-07 Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E++N+ + +I +L ++P + VA++G +GSGKST++ L++G Y+ +G+ Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGE 535 Query: 62 ILYKGE 67 IL+ G Sbjct: 536 ILFDGI 541 Score = 42.2 bits (100), Expect = 1e-04 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207 SGG+++ EI + + PS+ ILDE S LD + KI LR + + +I+ H Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN---LRRRGCTCIIVAH-- 670 Query: 208 RLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248 RL D I VL GK+++ G + L YA LI+ Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHE-ELWAVGGAYARLIR 710 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 51.2 bits (123), Expect = 2e-07 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 33/228 (14%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE--ITAGDILYKGESILDWSIV 75 +++ LNL ++ EV+A++G +GSGKS + G T+G+IL G +L SI Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60 Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN---EKELLIPDFTRKVRKITAE 132 R +MQ + A N N E + +++ R + E Sbjct: 61 GRHIA---------------TIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILE 105 Query: 133 --LGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 + + + L SGG + I LLEP I DE + LD+ A Sbjct: 106 ALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV---NQA 162 Query: 188 QGVNALRS----QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + + LR L+ITH ++ I D + V+ +G+I++ G Sbjct: 163 RVLKLLRELRQLFGTGILLITHDLGVVARIA-DEVAVMDDGRIVERGT 209 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 51.2 bits (123), Expect = 2e-07 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 25/228 (10%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EITAGDILYKGESIL 70 D + ++ +NL +E ++V A++GP+G GKST L+ D +I G++L G+ I Sbjct: 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE-GEVLLDGQDIY 73 Query: 71 DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRKVR 127 I V + K + + FQ P P M + +A + +K+ L I + + K Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFP---MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA 130 Query: 128 KITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD-IDAL 183 + E+ D LK+ LG SGG+++ IA L + EP + ++DE S LD I L Sbjct: 131 ALWDEV---KDRLKKSA-LGLSGGQQQRLCIARALAV---EPEVLLMDEPTSALDPISTL 183 Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 KI + + L+ +D + +I+TH + + I T L NG+I++ GD Sbjct: 184 KI-EELIQELK-KDYTIVIVTHNMQQASRISDKTAFFL-NGEIVEFGD 228 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 51.2 bits (122), Expect = 2e-07 Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 30/227 (13%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D +++GLNL S V ++G NG GKSTL LSG G +L++G+ LD+S Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKP-LDYS- 68 Query: 75 VERA----SKGIFLAFQYP------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR 124 +R + + FQ P +I I + + E R E L + Sbjct: 69 -KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ 127 Query: 125 KVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK 184 R +P+ S G+KK I +L+ +LDE +GLD Sbjct: 128 HFR-------------HQPIQC-LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + + +Q +I +H L+ Y D ++VL G+I+ G Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLI-YEISDAVYVLRQGQILTHGA 219 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 51.3 bits (123), Expect = 2e-07 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 23/224 (10%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 ++ +NL V P E+ A++G NG+GKSTL +LSG +E T G I + A Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA 78 Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL----G 134 GI + +Q I + +++ L I + +K + I D+ R++R A + G Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCG---VNIIDW-REMRVRAAMMLLRVG 134 Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL---DIDALKIAAQGVN 191 + +D+ ++ NL S K++ EI + +L+ + I+DE S L ++D L + +N Sbjct: 135 LKVDLDEKVANLSIS--HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI---MN 189 Query: 192 ALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGDYS 233 LR + + + I+H L I+ D V+ +G + +G S Sbjct: 190 QLRKEGTAIVYISHK---LAEIRRICDRYTVMKDGSSVCSGMVS 230 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 50.6 bits (121), Expect = 4e-07 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 30/223 (13%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE-- 76 + +L + E+ IMG +GSGKST +L+ + E TAG I GE+I+ S VE Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN--RLIEPTAGQIFIDGENIMKQSPVELR 66 Query: 77 -RASKGIFLAFQYPVEIPGIIMMQFLKIALN------EQRKARNEKELLIPDFTRKVRKI 129 K I + FQ P + ++Q + ++RK + + L + + Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188 EL SGG ++ + + EP + ++DE S LD + + + Sbjct: 127 PDEL---------------SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 Query: 189 GVNALRSQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230 + ++ + ITH L I+ D I ++ G+I++ G Sbjct: 172 LKKLQATLQKTIVFITH--DLDEAIRIGDRIVIMKAGEIVQVG 212 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 50.6 bits (121), Expect = 4e-07 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 30/224 (13%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 + + +NL+V +VA++GP+GSGKSTL +++G + + +G I G+ Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE--QPDSGRIRLNGQDATRVHA 69 Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134 +R I FQ+ + + + L ++ + + + +V ++ + Sbjct: 70 RDR---KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-------ARVEELLELVQ 119 Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194 + + P L SGG+++ + + +EP + +LDE LD A+ LR Sbjct: 120 LEGLGDRYPNQL--SGGQRQRVALARALAVEPQVLLLDEPFGALD-------AKVRKELR 170 Query: 195 SQDRSF--------LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 S R + +TH Q + D I V+ NGKI + G Sbjct: 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVA-DRIVVMSNGKIEQIG 213 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 50.6 bits (121), Expect = 4e-07 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 38/228 (16%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D ++ GL+ V E ++GPNG+GKST++ ++ G + AG I G + + Sbjct: 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARAR 110 Query: 75 VERASKGIFLAF-----QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP---DFTRKV 126 + RA G+ F ++ V ++ ++ + R E E +IP +F R Sbjct: 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM------STR-EIEAVIPSLLEFARLE 163 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 K A + SGG K+ + + + +P L ILDE +GLD A + Sbjct: 164 SKADARVS------------DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 Query: 187 AQGVNALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKIIKTG 230 + + +L ++ ++ L+ TH+ +RL D + VL G+ I G Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERLC-----DRLCVLEAGRKIAEG 254 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 50.5 bits (120), Expect = 4e-07 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 15/230 (6%) Query: 1 MLEIKNLRAKI-VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59 +LE++NL K ++D + G++ + E V+I+G NGSGKST + L+ G +E Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFE 61 Query: 60 GDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI 119 G + GE + ++ K I + FQ P QF+ A E A + I Sbjct: 62 GKVKIDGELLTAENVWNLRRK-IGMVFQNPDN-------QFVG-ATVEDDVAFGMENQGI 112 Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 P R A L +NM K SGG+K+ + + L P + ILDE+ S LD Sbjct: 113 PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172 Query: 180 IDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228 + + ++ ++ + + L ITH L D I V+ G+IIK Sbjct: 173 PTGRQEIMRVIHEIKEKYQLTVLSITH--DLDEAASSDRILVMKAGEIIK 220 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 50.1 bits (119), Expect = 5e-07 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 20/208 (9%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKD----YEITAGDILYKGESILDWSIVERASKGIFLAF 86 V ++MGP GSGK+T L+ D Y + GD+L G SI ++ V + + + F Sbjct: 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS-GDVLLGGRSIFNYRDVLEFRRRVGMLF 107 Query: 87 QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLN- 145 Q P P IM L R K + +F + E+G+ D +K L+ Sbjct: 108 QRPNPFPMSIMDNVLA-------GVRAHKLVPRKEFRGVAQARLTEVGL-WDAVKDRLSD 159 Query: 146 --LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR-SFLI 202 SGG++++ + + + P + +LDE S LD + + + +L DR + +I Sbjct: 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL--ADRLTVII 217 Query: 203 ITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 +TH I D + +G++++ G Sbjct: 218 VTHNLAQAARIS-DRAALFFDGRLVEEG 244 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 50.2 bits (120), Expect = 5e-07 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 37/260 (14%) Query: 1 MLEIKNLRAKIVD-TDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKD 54 +L +KNL + + E+ + ++ E +++ I+G +GSGKSTL +G K Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80 Query: 55 YEITAGDILYKGESILDWSIVERASKGI----------FLAFQYP------VEIPGIIMM 98 I GDI + I SK I + FQ+P I IM Sbjct: 81 GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIM- 139 Query: 99 QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEI 158 F +AL +K+ +K + ++G++ L+R G SGG+K+ I Sbjct: 140 -FGPVALG-VKKSEAKK---------LAKFYLNKMGLDDSYLERS-PFGLSGGQKRRVAI 187 Query: 159 LQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTI 218 + ++P + I DE +GLD Q + ++ +++ +ITH + + D + Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA-DEV 246 Query: 219 HVLHNGKIIKTGD-YSIALD 237 V+ GKI+KTG Y I D Sbjct: 247 IVMDKGKILKTGTPYEIFTD 266 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 50.1 bits (120), Expect = 5e-07 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 28/168 (16%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81 + + V AI G +GSGK+TL L++G +T +GE +L+ + + KG Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG-----LTR---PDEGEIVLNGRTLFDSRKG 67 Query: 82 IFL---------AFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 IFL FQ P + + L+ + ++AR + + + ++ Sbjct: 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM---KRARPSERRISFE------RVIEL 118 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180 LGI + + P L SGGEK+ I + L P L ++DE + LD Sbjct: 119 LGIGHLLGRLPGRL--SGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 50.2 bits (120), Expect = 5e-07 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E+KNL K E+++ ++ +E EV+ I+G +G+GKS L ++L G YE T+G Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58 Query: 62 ILY 64 I+Y Sbjct: 59 IIY 61 Score = 45.2 bits (107), Expect = 1e-05 Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 60/262 (22%) Query: 1 MLEIKNLRAKIVDTDTEIIR---GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57 +++++N+ + + D +++ ++L+V+ E+ I+G +G+GK+TLS +++G E Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG--VLEP 336 Query: 58 TAGDILYK-GESILDWSIVE-----RASKGIFLAFQ----YP-------------VEIPG 94 T+G++ + G+ +D + RA + I + Q YP +E+P Sbjct: 337 TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD 396 Query: 95 IIMMQ----FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSG 150 + LK+ ++ KA + K EL S Sbjct: 397 ELARMKAVITLKMVGFDEEKAEEILD-----------KYPDEL---------------SE 430 Query: 151 GEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRL 209 GE+ + Q+ + EP + ILDE +D I + + + A +++F+I++H Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490 Query: 210 LNYIKPDTIHVLHNGKIIKTGD 231 + + D ++ +GKI+K GD Sbjct: 491 VLDV-CDRAALMRDGKIVKIGD 511 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 50.1 bits (120), Expect = 5e-07 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%) Query: 1 MLEIKNLRAKIVDTD----TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE 56 M++ KN+ K + + +NL+V+ E + I+G NGSGKST++ ++ Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61 Query: 57 ITAGDILYKGESILD----WSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKA 111 + G + G D W I +A + FQ P +I I+ E+ A Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAG----MVFQNPDNQIVATIV---------EEDVA 108 Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSL 168 + L IP + R + + M +R SGG+K+ IA IL MR P Sbjct: 109 FGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR---PEC 165 Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDR-SFLIITHYQRLLNYIKPDTIHVLHNGKII 227 I DE + LD + + L + + ++ITHY ++ D I V+ +GK++ Sbjct: 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME--EAVEADRIIVMDSGKVV 223 Query: 228 KTG 230 G Sbjct: 224 MEG 226 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 49.8 bits (119), Expect = 6e-07 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 23/236 (9%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG------HKDY 55 +E K++ D+ + ++ + A++G NGSGKST+S L++G + + Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65 Query: 56 EITAGDILYKGESILDWSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNE 114 +IT I +++ W I E+ GI FQ P + G + + L + R E Sbjct: 66 KITVDGITLTAKTV--WDIREKV--GI--VFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119 Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174 + VR + A++G+ + P NL SGG+K+ I + +EP + ILDE+ Sbjct: 120 -------MIKIVRDVLADVGMLDYIDSEPANL--SGGQKQRVAIAGILAVEPKIIILDES 170 Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 S LD + + + L+ + + +I+ + D + VL +GK++ G Sbjct: 171 TSMLDPAGKEQILKLIRKLK-KKNNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 49.6 bits (118), Expect = 8e-07 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT-----AGDILYKGESI 69 D + ++ +NL V+ V A++GP+G GK+T +L + ++ +++T G IL G+ I Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTT--FLRAINRMHDLTPGARVTGRILLDGQDI 73 Query: 70 LDWSIVERA-SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 + A + + + FQ P P M F + + +++ L+ R +R Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRG 131 Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 A D LK P G SGG+++ I + +EP + ++DE S LD Sbjct: 132 -AALWDEVKDRLKTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 49.2 bits (118), Expect = 1e-06 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 4/62 (6%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIV 75 I+ ++L++EP E VAI+GP+GSGKSTL LL G + E +G + Y G+ + LD V Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAV 525 Query: 76 ER 77 R Sbjct: 526 RR 527 Score = 33.4 bits (77), Expect = 0.061 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Query: 147 GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHY 206 SGG+++ I + + +P + + DE S LD I ++ + L+ + ++I H Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV---TRIVIAH- 643 Query: 207 QRLLNYIKPDTIHVLHNGKIIKTGDY 232 RL D I+VL G++++ G Y Sbjct: 644 -RLSTIRNADRIYVLDAGRVVQQGTY 668 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 49.0 bits (117), Expect = 1e-06 Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 44/243 (18%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYEITA 59 ++ +N+ + D ++ GL+ V+ E ++GPNG+GK+T +L G H D A Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD----A 61 Query: 60 GDILYKGESILDWSIVERASKGIFLAF-----QYPVEIPGIIMMQFLKIALNEQRKARNE 114 G I GE + + R G+ F + V ++ ++ ++ R Sbjct: 62 GSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA---- 117 Query: 115 KELLIP---DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171 L+P +F + K A++G SGG K+ + + + +P + +L Sbjct: 118 ---LVPPLLEFAKLENKADAKVG------------ELSGGMKRRLTLARALVNDPDVLVL 162 Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKII 227 DE +GLD A + + + +L ++ ++ L+ TH+ +RL + + V+ G+ I Sbjct: 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR-----LCVIEEGRKI 217 Query: 228 KTG 230 G Sbjct: 218 AEG 220 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 48.7 bits (116), Expect = 1e-06 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EI 57 I+NL + + + ++ +NL + +V A++GP+G GKSTL L+ D +I Sbjct: 4 FNIENL--DLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI 61 Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117 T G + GE I V + + FQ P P M + +A + + +K++ Sbjct: 62 T-GKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP---MSIYENVAYGLRAQGIKDKKV 117 Query: 118 LIPDFTRKVRKITAELGINM-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176 L R +R A L + D LK G SGG+++ I + +EP + ++DE S Sbjct: 118 LDEVVERSLR--GAALWDEVKDRLKSH-AFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITH 205 LD A + + L+ ++ + +I+TH Sbjct: 175 ALDPIATHKIEELMEELK-KNYTIVIVTH 202 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 48.6 bits (116), Expect = 1e-06 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 23/240 (9%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY--EIT 58 +L++ +L + + + ++L P+E+ A++GP+GSGKSTL ++ D E+T Sbjct: 5 ILQVSDL--SVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62 Query: 59 -AGDILYKGESILD--WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 G I+Y G +I V+ K I + FQ P P M + + + K +K Sbjct: 63 ITGSIVYNGHNIYSPRTDTVD-LRKEIGMVFQQPNPFP---MSIYENVVYGLRLKGIKDK 118 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILD 172 ++L V K I D +K L+ LG SGG+++ I ++ P + +LD Sbjct: 119 QVL----DEAVEKSLKGASI-WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD 173 Query: 173 ETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 E S LD I A KI + L+ D + L++T + + I T L +G +I+ D Sbjct: 174 EPTSALDPISAGKIEETLLG-LK-DDYTMLLVTRSMQQASRISDRTGFFL-DGDLIEYND 230 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 48.6 bits (115), Expect = 1e-06 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY-EITA 59 + EI+N ++ ++ LNL ++ ++V A +GP+G GKST L+ D E T+ Sbjct: 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139 Query: 60 --GDILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116 G+I + G + I + I + FQ P M F +A + N+++ Sbjct: 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE---MSIFDNVAYGPRNNGINDRK 196 Query: 117 LL--IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174 +L I + + K + E+ ++D L SGG+++ I + LEP + ++DE Sbjct: 197 ILEKIVEKSLKSAALWDEVKDDLDKAGNAL----SGGQQQRLCIARAIALEPEVLLMDEP 252 Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 S LD A + + L+ + S +I+TH I +T+ + G I + G+ Sbjct: 253 TSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQRISDETV-FFYQGWIEEAGE 307 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 48.5 bits (116), Expect = 2e-06 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 35/216 (16%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 LE+++L ++ G++L + P E VAI+GP+GSGKSTL LL+G D G+ Sbjct: 335 LELRDLSFG-YPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGE 391 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 + G S+ S ++ + F + + L++ R ++EL Sbjct: 392 VTLDGVSV---SSLQDELRRRISVFAQDAHLFDTTVRDNLRLG----RPDATDEELW--A 442 Query: 122 FTRKVRKITAELGINMDMLKRPLN--LG-----FSGGEKK---IAEILQMRLLEPSLCIL 171 +V L + L L+ LG SGGE++ +A L L + + +L Sbjct: 443 ALERVG-----LADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL---LADAPILLL 494 Query: 172 DETDSGLDIDALKIAAQGVNALRSQD--RSFLIITH 205 DE LD ++ + L + ++ ++ITH Sbjct: 495 DEPTEHLDAGT---ESELLEDLLAALSGKTVVVITH 527 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 48.4 bits (116), Expect = 2e-06 Identities = 58/226 (25%), Positives = 113/226 (50%), Gaps = 35/226 (15%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS- 79 G++ +E + +A++G +G GKSTL+ LL+ + T G++ Y+G+ +L + Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIE--TPTGGELYYQGQDLLKADPEAQKLL 90 Query: 80 -KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN--EKELLI------PDFTRKVRKIT 130 + I + FQ P +LN ++K E+ LLI + K + Sbjct: 91 RQKIQIVFQNPYG------------SLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138 Query: 131 AELGINMDMLKRPLNLGFSGGEK-KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189 A++G+ + R ++ FSGG++ +IA I + +L+P + + DE S LD+ + AQ Sbjct: 139 AKVGLRPEHYDRYPHM-FSGGQRQRIA-IARALMLDPDVVVADEPVSALDV---SVQAQV 193 Query: 190 VNALRS-QDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 +N + Q S++ I+H ++ +I D + V++ G+ ++ G Sbjct: 194 LNLMMDLQQELGLSYVFISHDLSVVEHIA-DEVMVMYLGRCVEKGT 238 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 48.3 bits (115), Expect = 2e-06 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 17/223 (7%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 I+ G+++ P + ++GPNGSGKSTL LL+G AG + G + S R Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRAR 73 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137 A + + +P + + + R+ P V + A ++ Sbjct: 74 ARRVALVEQDSDTAVP----LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS- 128 Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ--GVNALRS 195 + R ++ SGGE++ + + EP L +LDE + LD + AQ + +R Sbjct: 129 HLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLD-----VRAQLETLALVRE 182 Query: 196 Q--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236 ++ + L D + VL G+++ G L Sbjct: 183 LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 48.0 bits (114), Expect = 2e-06 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKS----TLSYLLSGHKDYEITAGDILYKGESILDWSI 74 ++ +NL + +EV AI+GP+G GKS TL+ ++ + ++T G++ Y G +IL + Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT-GEMNYNGSNILKGKV 86 Query: 75 -VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQ-RKARNEKELLIPDFTRKVRKITAE 132 + K I + FQ P I F +A + +N+K+L + K K A Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSI---FDNVAYGPRIHGTKNKKKLQ--EIVEKSLKDVAL 141 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185 D L L SGG+++ I + P + ++DE S LD + KI Sbjct: 142 WDEVKDRLHTQA-LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 48.2 bits (115), Expect = 2e-06 Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 47/255 (18%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKST----LSYLL---SGHKDYEITAGDILYKGESILD 71 + +++++ E +AI+G GSGK+T L+ LL +G ++ K + Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 Query: 72 WSIVERASKGIFLAFQYPVEIP---GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 K F + EI G++ QF + L EQ EK+++ + V K Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVF-QFAEYQLFEQTI---EKDIIFGPVSMGVSK 138 Query: 129 ITAE---------LGINMDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETD 175 A+ +G++ L+R P L SGG+K+ +A IL M EP + DE Sbjct: 139 EEAKKRAAKYIELVGLDESYLQRSPFEL--SGGQKRRVALAGILAM---EPDFLVFDEPT 193 Query: 176 SGLD----IDALKIAAQGVNALRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230 +GLD + L+I + L Q ++ +++TH +L + K TI +GKIIK G Sbjct: 194 AGLDPQGVKEILEI----FDNLNKQGKTIILVTHDLDNVLEWTK-RTI-FFKDGKIIKDG 247 Query: 231 D-YSIALD---LEEN 241 D Y I D L EN Sbjct: 248 DTYDILSDNKFLIEN 262 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 47.9 bits (114), Expect = 2e-06 Identities = 59/244 (24%), Positives = 118/244 (48%), Gaps = 29/244 (11%) Query: 1 MLEIKNLRAKIVDTDT--------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH 52 +LE++NL +K T E ++ L+ + + +AI+G NGSGKSTL+ +L+G Sbjct: 4 LLEVRNL-SKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 Query: 53 KDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEI--PGIIMMQFLKIALNEQRK 110 E T+G++L L + S+ I + FQ P P + Q L L Sbjct: 63 --IEPTSGELLIDDHP-LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL----- 114 Query: 111 ARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI 170 R +L +++ + ++G+ D ++ G ++++ + + +L P + I Sbjct: 115 -RLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG-LARALILRPKVII 172 Query: 171 LDETDSGLDIDALKIAAQGVN-ALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKI 226 DE + LD + + +Q +N L Q++ S++ +T + ++ +I D + V+H G++ Sbjct: 173 ADEALASLD---MSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS-DQVLVMHQGEV 228 Query: 227 IKTG 230 ++ G Sbjct: 229 VERG 232 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 47.7 bits (113), Expect = 3e-06 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 15/197 (7%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESIL- 70 + + ++ +++++ + V A++GP+G GKST L+ D G + +GE I Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 Query: 71 -DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 D +VE K + + FQ P P M + +A + N+K+L + Sbjct: 84 PDVDVVE-LRKNVGMVFQKPNPFP---MSIYDNVAYGPRIHGANKKDL--DGVVENALRS 137 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188 A D LK P L SGG+++ I + ++P + + DE S LD I +I Sbjct: 138 AALWDETSDRLKSPA-LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196 Query: 189 GVNALRSQDRSFLIITH 205 +N +D + +I+TH Sbjct: 197 IMNL--KKDYTIVIVTH 211 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 47.4 bits (113), Expect = 3e-06 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 24/170 (14%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEITAGDILYKGESIL 70 D +I+ ++ + E I GP+G GKSTL + L+S T+G +L++GE I Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP------TSGTLLFEGEDIS 72 Query: 71 DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 E + + Q P + G + L + + + Sbjct: 73 TLK-PEIYRQQVSYCAQTPT-LFGDTVYDNLIFPWQIRNQQPDPA---------IFLDDL 121 Query: 131 AELGINMDMLKRPLNLGFSGGEK-KIAEILQMRLLEPSLCILDETDSGLD 179 + +L + + SGGEK +I+ I ++ + P + +LDE S LD Sbjct: 122 ERFALPDTILTKNIA-ELSGGEKQRISLIRNLQFM-PKVLLLDEITSALD 169 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 47.3 bits (113), Expect = 4e-06 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 29/210 (13%) Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72 +++ +NL++ P E+V + GP+GSGK+TL L+ G + + G + G+ + Sbjct: 15 SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGA 72 Query: 73 SIVER--ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-----K 125 S E + I FQ ++ FL N Q L P+ + + Sbjct: 73 SEKELVQLRRNIGYIFQ------AHNLLGFLTARQNVQMALE-----LQPNLSYQEARER 121 Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDA 182 R + +G+ + P NL SGG+K+ IA L R P L + DE + LD + Sbjct: 122 ARAMLEAVGLGDHLDYYPHNL--SGGQKQRVAIARALVHR---PKLVLADEPTAALDSKS 176 Query: 183 LKIAAQGVNAL-RSQDRSFLIITHYQRLLN 211 + + + L R Q + LI+TH R+L+ Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNRILD 206 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 47.1 bits (112), Expect = 4e-06 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 16/179 (8%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 +LEI+NL K D + ++L + E+ A++G +G GKSTL +L+G + + TAG Sbjct: 19 LLEIRNL-TKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--QPTAG 74 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120 I+ G +D S V + I + FQ P + + Q + L + + + E Sbjct: 75 QIMLDG---VDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE------ 125 Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 +V ++ + + ++P L SGG+++ + + P L +LDE LD Sbjct: 126 -IASRVNEMLGLVHMQEFAKRKPHQL--SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 47.2 bits (112), Expect = 4e-06 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 31/216 (14%) Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD-WSIVERASKGI 82 L + E++ ++GPNG+GK+TL + G G + G S W + + Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGKGWRHIGYVPQRH 58 Query: 83 FLAFQYPVEIPGIIM------MQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 A+ +P+ + +M + +L R+ + D R+V EL Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWL-------RRPCVADFAAVRDALRRVG--LTELA-- 107 Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196 RP+ SGG+++ + + PS+ +LDE +GLD+ ++ + L Sbjct: 108 ----DRPVG-ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 Query: 197 DRSFLIITHYQRLLNYIKPDTIH--VLHNGKIIKTG 230 + L+ TH L + T VL NG++I G Sbjct: 163 GTAILMTTH--DLAQAM--ATCDRVVLLNGRVIADG 194 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 47.1 bits (112), Expect = 4e-06 Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 44/228 (19%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81 L+L +V ++G NGSGKSTL +L H+ + G+IL + + WS A K Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSSKAFARKV 87 Query: 82 IFLAFQYPVEIPGIIMMQFLKI-------ALNEQRKARNEKELLIPDFTRKVRKITAELG 134 +L Q P G+ + + + I AL R ++E KV + + +G Sbjct: 88 AYLPQQLP-AAEGMTVRELVAIGRYPWHGALG--RFGAADRE--------KVEEAISLVG 136 Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLC-ILDETDSGLDIDALKIAAQGVNAL 193 + L L SGGE++ A I M + + S C +LDE S LDI A V+ L Sbjct: 137 LK--PLAHRLVDSLSGGERQRAWI-AMLVAQDSRCLLLDEPTSALDI------AHQVDVL 187 Query: 194 R-----SQDRSFLIITHYQRLLNYIKP-----DTIHVLHNGKIIKTGD 231 SQ+R +I +L+ I D + L G++I G Sbjct: 188 ALVHRLSQERGLTVIA----VLHDINMAARYCDYLVALRGGEMIAQGT 231 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 47.2 bits (113), Expect = 4e-06 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 22/233 (9%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80 ++ +V A+MG NG+GKSTL +LSG +Y+ AG IL G+ + S + Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSG--NYQPDAGSILIDGQEMRFASTTAALAA 79 Query: 81 GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD-- 138 G+ + +Q +P + + + L + + + LL + R+ LG+++D Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN----YEAREQLEHLGVDIDPD 135 Query: 139 -MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197 LK S G++++ EI + + DE S L ++ + + LR++ Sbjct: 136 TPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190 Query: 198 RSFLIITHYQRLLN-YIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249 R L ++H R+ + D I V +G+ + T D D+ + +L++ Sbjct: 191 RVILYVSH--RMEEIFALCDAITVFKDGRYVATFD-----DMAQVDRDQLVQA 236 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 46.8 bits (111), Expect = 5e-06 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 31/240 (12%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 M+++ +L + DT ++ G++L V +V ++GPNG+GK+TL ++G TAG Sbjct: 3 MIDVSDL--SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING--TLTPTAG 58 Query: 61 DILYKGESI--LDWSIVER--AS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE 114 +L G+ + L R AS + L+F++ V ++ M + R+ Sbjct: 59 TVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR--QVVEMG--------RTPHRSR 108 Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL---EPSLCIL 171 + V + G+ RP+ SGGE++ +L R L P L +L Sbjct: 109 FDTWTETDRAAVERAMERTGVAQ-FADRPVT-SLSGGERQ--RVLLARALAQATPVL-LL 163 Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRL-LNYIKPDTIHVLHNGKIIKTG 230 DE + LDI+ + V L ++ + H L Y D + +L +G++ G Sbjct: 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC--DELVLLADGRVRAAG 221 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 46.6 bits (110), Expect = 6e-06 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 17/232 (7%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---I 57 ++E +NL + TD + + +N+K+ + + A++GP+G GKST L+ D Sbjct: 7 IIETENL--NLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64 Query: 58 TAGDILYKGESIL--DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 G+++Y+G++I ++ I+E K I + FQ P +M + I+ + +K Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRK-IGMVFQTPNP---FLMSIYDNISYGPKIHGTKDK 120 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175 + L + + K +A D L L SGG+++ I + +EP++ ++DE Sbjct: 121 KKL-DEIVEQSLKKSALWNEVKDKLNTNA-LSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 Query: 176 SGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226 S LD I KI +N S + +I+TH + I T L NG I Sbjct: 179 SALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFL-NGCI 227 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 46.6 bits (111), Expect = 6e-06 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 35/238 (14%) Query: 1 MLEIKNLRAKIVDTDTE--IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58 ++E+KNL K D E + ++ V+ E ++I+G NGSGKST L+ G + E Sbjct: 4 IIEVKNLTFK-YKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-- 60 Query: 59 AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFL------KIALNEQRKAR 112 +G I+ G+ + + ++ + K I + FQ P QF+ +A + K Sbjct: 61 SGQIIIDGDLLTEENVWDIRHK-IGMVFQNPDN-------QFVGATVEDDVAFGLENKGI 112 Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLC 169 +E+ +V + +G+ + P L SGG+K+ IA + MR P + Sbjct: 113 PHEEM-----KERVNEALELVGMQDFKEREPARL--SGGQKQRVAIAGAVAMR---PKII 162 Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLI-ITHYQRLLNYIKPDTIHVLHNGKI 226 ILDE S LD + + + +R + +I ITH L D + V+ NG++ Sbjct: 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNGQV 218 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 46.6 bits (111), Expect = 6e-06 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 34/206 (16%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH--KDYEITAGDILYKGESILDWSI 74 +++ ++ +P E++A+MG +G+GK+TL L+ K + +G +L G I + Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG-SGSVLLNGMPIDAKEM 97 Query: 75 VERASKGIFLAFQYPVEIPG------IIMMQFLKIALNEQRKARNE--KELLIPDFTRKV 126 ++ Q + IP ++ L++ +K + E E+L RK Sbjct: 98 RAISA----YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC 153 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDAL 183 +G+ + G SGGE+K A L L +P L DE SGLD Sbjct: 154 ANTR--IGVPGRV------KGLSGGERKRLAFASEL---LTDPPLLFCDEPTSGLDS--- 199 Query: 184 KIAAQGVNALR--SQDRSFLIITHYQ 207 +A V L+ +Q +I T +Q Sbjct: 200 FMAYSVVQVLKGLAQKGKTIICTIHQ 225 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 46.3 bits (110), Expect = 7e-06 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 40/227 (17%) Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY--EITAGDILYKGESILDWSIVER---AS 79 V+ EVV I+G +GSGKS S + G DY + A + + G+ + S ER Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88 Query: 80 KGIFLAFQYPVE------IPGIIMMQFLKIALNEQRKARNEK--ELL----IPDFTRKVR 127 + + FQ P+ G +M+ +K+ +K R ++ +LL IPD ++ Sbjct: 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLD 148 Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 +L SGG + I P L I DE + LD+ I A Sbjct: 149 VYPHQL---------------SGGMSQRVMIAMAIACRPKLLIADEPTTALDV---TIQA 190 Query: 188 QGVNAL----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 Q + L + ++ + ++ITH L+ I V++ G++++TG Sbjct: 191 QIIELLLELQQKENMALVLITHDLALVAEAA-HKIIVMYAGQVVETG 236 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 45.9 bits (109), Expect = 9e-06 Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 20/201 (9%) Query: 34 IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIP 93 ++GP+G GK+TL LL+G + + +G I+ GE + + V + I + FQ P Sbjct: 1 LLGPSGCGKTTLLRLLAGFE--QPDSGSIMLDGEDV---TNVPPHLRHINMVFQSYALFP 55 Query: 94 GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM-DMLKR-PLNLGFSGG 151 + + + + L ++ R E K R + A + + + R P L SGG Sbjct: 56 HMTVEENVAFGLKMRKVPRAE---------IKPRVLEALRLVQLEEFADRKPHQL--SGG 104 Query: 152 EKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLL 210 +++ + + + +P + +LDE S LD + ++ Q +F+ +TH Q Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164 Query: 211 NYIKPDTIHVLHNGKIIKTGD 231 + D I ++ GKI + G Sbjct: 165 MTMS-DRIAIMRKGKIAQIGT 184 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 46.1 bits (109), Expect = 9e-06 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 28/223 (12%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74 D ++ L+ + E ++GPNG+GKST++ +L G + G I GE + + Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--GKITVLGEPVPSRAR 73 Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP---DFTRKVRKITA 131 + R + G+ Q+ P + + L + + E E +IP +F R K Sbjct: 74 LARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV 131 Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191 + + SGG K+ + + + +P L ILDE +GLD A + + + Sbjct: 132 RVAL------------LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 Query: 192 ALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKIIKTG 230 +L ++ ++ L+ TH+ +RL D + VL +G+ I G Sbjct: 180 SLLARGKTILLTTHFMEEAERLC-----DRLCVLESGRKIAEG 217 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 45.9 bits (109), Expect = 1e-05 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 26/203 (12%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK-----DYEITAGDILYKGESI 69 E I+G++++ E +++ A++GP+GSGKST YL S ++ D G ILY+G I Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKST--YLRSLNRMNDTIDIARVTGQILYRGIDI 89 Query: 70 LDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 I V K I + FQ P I + I +R +K++L +++ Sbjct: 90 NRKEINVYEMRKHIGMVFQRPNPFAKSI---YENITFALERAGVKDKKVLDEIVETSLKQ 146 Query: 129 ITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDA 182 A L D +K L+ L SGG+++ IA + ++ P + ++DE S LD + Sbjct: 147 --AAL---WDQVKDDLHKSALTLSGGQQQRLCIARAIAVK---PDILLMDEPASALDPIS 198 Query: 183 LKIAAQGVNALRSQDRSFLIITH 205 + + L+ ++ + +I+TH Sbjct: 199 TMQLEETMFELK-KNYTIIIVTH 220 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 45.8 bits (109), Expect = 1e-05 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 30/195 (15%) Query: 1 MLEIKNLRAKIV-----DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY 55 +LE+++L +++ ++L V E VA+ GP+G+GKSTL L S + +Y Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTL--LKSLYANY 58 Query: 56 EITAGDILYK-GESILD------WSIVERASKGIFLAFQYPVEIPGI----IMMQFLKIA 104 +G IL + + +D ++E K I Q+ IP + ++ + L Sbjct: 59 LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER 118 Query: 105 LNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL 164 + AR L+ A L I + P FSGGE++ I + + Sbjct: 119 GVPREAARARARELL-----------ARLNIPERLWHLPPAT-FSGGEQQRVNIARGFIA 166 Query: 165 EPSLCILDETDSGLD 179 + + +LDE + LD Sbjct: 167 DYPILLLDEPTASLD 181 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 45.9 bits (109), Expect = 1e-05 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 35/201 (17%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA-----GDILYKGESILDWSI-- 74 +NL +EP V A +GP+G GKST L + ++ +E+ G++L GE + + Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKST--VLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 Query: 75 --VERASKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 V R I + FQ P P + + + LN R ++ EL+ + +R Sbjct: 81 VAVRRT---IGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELV----EKSLR--- 130 Query: 131 AELGINM-----DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALK 184 G N+ D L +P G SGG+++ I + +EP + ++DE S LD I L Sbjct: 131 ---GANLWNEVKDRLDKP-GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186 Query: 185 IAAQGVNALRSQDRSFLIITH 205 I +N L+ QD + +I+TH Sbjct: 187 I-EDLINELK-QDYTIVIVTH 205 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 45.7 bits (109), Expect = 1e-05 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 LE++NL K D + + + LNL +E E +AI+G NG GK+TL L G + E +G Sbjct: 320 LEVENL-TKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG--ELEPDSGT 375 Query: 62 I 62 + Sbjct: 376 V 376 Score = 28.3 bits (64), Expect = 1.9 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 36 GPNGSGKSTLSYLLSGHKDYEITAGDI 62 G NG GKST +L G D E +AG++ Sbjct: 34 GANGCGKSTFMKILGG--DLEPSAGNV 58 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 45.6 bits (108), Expect = 1e-05 Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 45/259 (17%) Query: 1 MLEIKNLRA---KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57 ML + A KI + + ++L + E+V ++G NG+GK+TL L G D Sbjct: 5 MLSFDKVSAHYGKI-----QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRA 57 Query: 58 TAGDILYKGESILDWSIVERASKGIFLA------FQYPVEIPGIIMMQFLKIALNEQRKA 111 T+G I++ G+ I DW + + + + F + M F Q + Sbjct: 58 TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI 117 Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171 + EL R++++ SGGE+++ I + + +P L +L Sbjct: 118 KWVYELFPRLHERRIQRAGT----------------MSGGEQQMLAIGRALMSQPRLLLL 161 Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRS-FLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 DE GL ++ + LR Q + FL+ + + L D +VL NG ++ Sbjct: 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL--ADRGYVLENGHVV--- 216 Query: 231 DYSIALDLEENGYAELIKE 249 LE+ G A L E Sbjct: 217 -------LEDTGDALLANE 228 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 45.1 bits (107), Expect = 2e-05 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 23/165 (13%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78 ++G+NL ++ E ++++G +G GKSTL L+SG + T+G ++ +G+ I Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQI------TEP 52 Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL-GINM 137 + FQ +P + + + + +A++ ++ E R + + L G+ Sbjct: 53 GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE------RRAIVEEHIALVGLTE 106 Query: 138 DMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD 179 KRP L SGG K+ IA L +R P + +LDE LD Sbjct: 107 AADKRPGQL--SGGMKQRVAIARALSIR---PKVLLLDEPFGALD 146 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 45.1 bits (106), Expect = 2e-05 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 27/219 (12%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEITAGDILYKGESILDWSIVERA 78 ++L+V+ A++G GSGKSTL L+G + ++T GDI+ S ++ Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS--KQKEIKPV 82 Query: 79 SKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAE----L 133 K + + FQ+P + LK +A Q +++ KI AE + Sbjct: 83 RKKVGVVFQFPES--QLFEETVLKDVAFGPQNFGIPKEK---------AEKIAAEKLEMV 131 Query: 134 GINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192 G+ + K P L SGG+ + I + +EP + +LDE +GLD A Q + Sbjct: 132 GLADEFWEKSPFEL--SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189 Query: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230 + ++ +++TH + +Y D +++L G II G Sbjct: 190 IHQSGQTVVLVTHLMDDVADY--ADYVYLLEKGHIISCG 226 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 45.1 bits (107), Expect = 2e-05 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%) Query: 1 MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49 +LE+K++R + E+++G++L + E+VAI+G +GSGKSTL +L Sbjct: 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 45.1 bits (107), Expect = 2e-05 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69 NLKV P + A+MG NG+GKSTL L G Y+ +G IL++G+ I Sbjct: 18 NLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGKEI 62 Score = 28.2 bits (63), Expect = 2.3 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 149 SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQR 208 SGG ++ I + L +P + +LDE G+D+ A Q + L +D+ +II+ Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 Query: 209 LLNYIKPDTIHVLHNGKI 226 L I D I V+ NG + Sbjct: 453 ELLGIT-DRILVMSNGLV 469 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 45.0 bits (107), Expect = 2e-05 Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 41/241 (17%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80 G L V P V+A++G NG+GKST+ +L+G Y AG ILY G+ + Sbjct: 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQEA 79 Query: 81 GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV-----RKITAELGI 135 GI + Q IP L IA E L +F + +K+ AE Sbjct: 80 GIGIIHQELNLIPQ------LTIA---------ENIFLGREFVNRFGRIDWKKMYAE--- 121 Query: 136 NMDMLKRPLNLGFSG---------GEKKIAEILQMRLLEPSLCILDE-TDSGLDIDALKI 185 D L LNL FS GE+++ EI ++ E + I+DE TD+ D + + Sbjct: 122 -ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180 Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245 + L+SQ R + I+H + + I D + V +G+ I + +A DL E+ E Sbjct: 181 FRV-IRELKSQGRGIVYISHRLKEIFEI-CDDVTVFRDGQFI--AEREVA-DLTEDSLIE 235 Query: 246 L 246 + Sbjct: 236 M 236 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 44.8 bits (106), Expect = 2e-05 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 30/201 (14%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYKGESILD 71 + + + + + V A++GP+G GKSTL + L+ G + IT GDILY GE+I+D Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR---IT-GDILYNGENIMD 77 Query: 72 WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 V + I + FQ P P I + +A + K+ L + ++ Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSI---YENVAYGPRIHGEKNKKTLDTIVEKSLKG-- 132 Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 A L D +K L+ L SGG+++ I + + P + ++DE S LD IA Sbjct: 133 AAL---WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD----PIAT 185 Query: 188 QGVNAL---RSQDRSFLIITH 205 + L ++ + +I+TH Sbjct: 186 AKIEDLIEDLKKEYTVIIVTH 206 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 45.0 bits (106), Expect = 2e-05 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 16/229 (6%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG---ESILDWSIV 75 ++ +L +E E+ IMG +GSGKST+ LL+ + E T G +L G I D + Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN--RLIEPTRGQVLIDGVDIAKISDAELR 101 Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135 E K I + FQ +P + ++ + E+ D R+V G+ Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-------GL 154 Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALR 194 P L SGG ++ + + + P + ++DE S LD + ++ + V Sbjct: 155 ENYAHSYPDEL--SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243 R+ + I+H I D I ++ NG++++ G L+ N Y Sbjct: 213 KHQRTIVFISHDLDEAMRIG-DRIAIMQNGEVVQVGTPDEILNNPANDY 260 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 45.1 bits (106), Expect = 2e-05 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 10/193 (5%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWS 73 ++++ +N+ ++ AI+GP+G GKSTL L+ D A G +L E+I + Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 Query: 74 I-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 + V K + + FQ P P I F +A + + L + +R+ Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPKSI---FDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW 134 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192 + ++ K L L SGG+++ I ++ +EP + ++DE S LD + + + Sbjct: 135 DEVKDNLHKSGLAL--SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192 Query: 193 LRSQDRSFLIITH 205 L+ Q+ + I+TH Sbjct: 193 LK-QNYTIAIVTH 204 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 44.9 bits (107), Expect = 2e-05 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 +E++ + K D E+I L+L + E + ++GP+G GK+T+ L++G + +G Sbjct: 15 VELRGIS-KSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPDSGR 70 Query: 62 ILYKGESI 69 I+ G+ I Sbjct: 71 IMLDGQDI 78 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 44.6 bits (106), Expect = 3e-05 Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 2/48 (4%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69 +NL ++ E++ ++G NGSGKSTL+ LL+G Y+ +G+IL G+ + Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPV 387 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 44.2 bits (105), Expect = 3e-05 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 12/94 (12%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYE 56 L +NL I+ L+L + ++ A++GPNG GKSTL + LL+ Sbjct: 2 TLRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP----- 54 Query: 57 ITAGDILYKGESILDWSIVERASKGIFLAFQYPV 90 +G + + I S + A + L + Sbjct: 55 -QSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 43.9 bits (104), Expect = 4e-05 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 39/247 (15%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 LE KNL + + ++L V + V ++GPNG+GKSTL +++G T+G+ Sbjct: 1 LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGE 56 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 I++ G W+ + G +E P + + + E K L +PD Sbjct: 57 IIFDGH---PWTRKDLHKIGSL------IESPPL----YENLTARENLKVHT-TLLGLPD 102 Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181 ++ ++ + + K+ FS G K+ I L P L ILDE +GLD Sbjct: 103 --SRIDEVLNIVDLTNTGKKKAKQ--FSLGMKQRLGIAIALLNHPKLLILDEPTNGLD-- 156 Query: 182 ALKIAAQGVNALRSQDRSF------LIITHYQRLLNYIK--PDTIHVLHNGKIIKTGDYS 233 G+ LR RSF +I++ + +L+ ++ D I ++ G + G + Sbjct: 157 -----PIGIQELRELIRSFPEQGITVILSSH--ILSEVQQLADHIGIISEGVLGYQGKIN 209 Query: 234 IALDLEE 240 + +LE+ Sbjct: 210 KSENLEK 216 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 44.1 bits (104), Expect = 4e-05 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 26/227 (11%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++ GLN V E VA++GP+GSGKST+ +L + I G I +GE + + + R Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQL--YHMPGR 70 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAE---- 132 + ++ ++ I M F L + N E P + + AE Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE--APVLVLGMARAEAEKRAM 128 Query: 133 -----LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 +G+ P L SGG+++ I + + P + + DE S LD + + Sbjct: 129 ELLDMVGLADKADHMPAQL--SGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVG 183 Query: 188 QGVNALR----SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 + +N +R D + L++TH D + G+I++ G Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFA-DRVCFFDKGRIVEQG 229 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 43.7 bits (103), Expect = 4e-05 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 31/246 (12%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI---TAGDILYKGESILDWS 73 +I+ +NL + EV A +GP+G GKST + D+ G++ G + Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78 Query: 74 ---IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK--ARNEKEL--LIPDFTRKV 126 ++ RA G + FQ P P I + +A + A+N+K+L ++ V Sbjct: 79 TNVVLLRAKVG--MVFQKPNPFPKSI---YDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133 Query: 127 RKITAELGINMDMLK-RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185 + ELG D LK L SGG+++ I + ++P++ ++DE S LD A + Sbjct: 134 -GLWEELG---DRLKDSAFEL--SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187 Query: 186 AAQGVNALRSQDRSFLII--THYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243 N ++ ++F II TH + + D + +G+I++ ++ +N Sbjct: 188 IE---NLIQELKKNFTIIVVTHSMKQAKKVS-DRVAFFQSGRIVEYNTTQ---EIFKNPQ 240 Query: 244 AELIKE 249 + K Sbjct: 241 SSKTKR 246 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 43.7 bits (103), Expect = 5e-05 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 21/193 (10%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI---LDWSIV 75 +R + V + A++G NGSGKSTL L G + +G I G+ L ++V Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQALQKNLV 80 Query: 76 ERASKGIFLAFQYPVEIPGIIMM-QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134 + + + +PV + ++MM ++ + + K R+ R+I Sbjct: 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD-------------RQIVTAAL 127 Query: 135 INMDMLK-RPLNLG-FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192 +DM++ R +G SGG+KK + + + + +LDE +G+D+ + Sbjct: 128 ARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187 Query: 193 LRSQDRSFLIITH 205 LR + ++ L+ TH Sbjct: 188 LRDEGKTMLVSTH 200 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 43.2 bits (102), Expect = 6e-05 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 I+ G+ L V+ E +A++G +GSGKSTL +L+G D ++G++ G+ + R Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEAR 82 Query: 78 A---SKGIFLAFQYPVEIPGIIMMQFLKI-AL----NEQRKARNEKELLIPDFTRKVRKI 129 A +K + FQ + IP + ++ +++ AL + ++ K LL Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALL----------- 131 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID-ALKIAAQ 188 +LG+ + P L SGGE++ + + P + DE LD KIA Sbjct: 132 -EQLGLGKRLDHLPAQL--SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 Query: 189 GVNALRSQDRSFLIITHYQRL 209 + R + +++TH +L Sbjct: 189 LFSLNREHGTTLILVTHDLQL 209 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 43.3 bits (103), Expect = 6e-05 Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%) Query: 145 NLGFSGGE-KKIAEILQMRLLEP-SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLI 202 G S G+ +++A L LL+P L +LDE + LD + ++ Q +NA S+ ++ L+ Sbjct: 483 AAGLSVGQAQRLA--LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLM 539 Query: 203 ITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246 +TH +L + + D I V+ +G+I++ GDY+ L +A L Sbjct: 540 VTH--QLEDLAQWDQIWVMQDGQIVQQGDYA-ELSQAGGLFATL 580 Score = 33.7 bits (78), Expect = 0.042 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 2 LEIKNLRAKIVDTDTEIIRG-LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE 56 +E ++L +I+ D + + G LN + + +A++GP+G+GK++L L G Y+ Sbjct: 350 IEAEDL--EILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ 403 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 43.1 bits (101), Expect = 6e-05 Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 12/213 (5%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK--GESILDWSIVERAS 79 +N+++E +++ A++G +G GKST + D +I D L + G+ + + +V Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMND-KIAKIDGLVEIEGKDVKNQDVVA-LR 78 Query: 80 KGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138 K + + FQ P V + I L+ K ++E+E L+ D +KV + E+ D Sbjct: 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEV---KD 134 Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198 LK+ L SGG+++ I + ++P L +LDE S LD + + + + L S + Sbjct: 135 KLKQNA-LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNL 192 Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 S +++TH + + D H G++I+ G+ Sbjct: 193 SMIMVTHNMQQGKRVA-DYTAFFHLGELIEFGE 224 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 43.0 bits (101), Expect = 7e-05 Identities = 48/213 (22%), Positives = 98/213 (46%), Gaps = 16/213 (7%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++ GL+ V PSE V ++G G+GKS S L + + E+ G I+ + + + + Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKS--SMLNALFRIVELEKGRIMIDDCDVAKFGLTD- 1307 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137 + + + Q PV G + +F +E A + L + + G++ Sbjct: 1308 LRRVLSIIPQSPVLFSGTV--RFNIDPFSEHNDADLWEALERAHIKDVIDR--NPFGLDA 1363 Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197 ++ + N FS G++++ + + L + +LDE + +D+ + + +R + Sbjct: 1364 EVSEGGEN--FSVGQRQLLSLARALLRRSKILVLDEATASVDV---RTDSLIQRTIREEF 1418 Query: 198 RS--FLIITHYQRLLNYIKPDTIHVLHNGKIIK 228 +S L+I H RL I D I VL +G++++ Sbjct: 1419 KSCTMLVIAH--RLNTIIDCDKILVLSSGQVLE 1449 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 43.0 bits (101), Expect = 7e-05 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EITAGDILYKGESIL 70 + + + +NL + +++ A++GP+G GKST L+ D +I G++L G++I Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIY 74 Query: 71 DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 D + V K + + FQ P P M + +A + +K+ L ++K Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFP---MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131 Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188 + D+ K L L SGG+++ I + ++P + ++DE S LD I LKI + Sbjct: 132 ALWDEVKDDLKKSALKL--SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKI--E 187 Query: 189 GVNALRSQDRSFLIITH 205 + ++ + +I+TH Sbjct: 188 DLMVELKKEYTIVIVTH 204 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 42.9 bits (101), Expect = 7e-05 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 31/244 (12%) Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY--KGESILDWSIVER 77 R ++ + P EV+ I+G +GSGKSTL L+G G Y + + L+ + Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSE 77 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAELGIN 136 A + + ++ G + Q + L + A N E L+ R I A Sbjct: 78 AERRRLMRTEW-----GFV-HQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDW 131 Query: 137 MDMLKRPLN------LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190 ++ ++ FSGG ++ +I + + P L +DE GLD+ + A+ + Sbjct: 132 LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLL 188 Query: 191 NALRSQDRSF----LIITH---YQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243 + LR R +I+TH RLL + V+ G+++++G LD ++ Y Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLL----AQRLLVMQQGRVVESGLTDQVLDDPQHPY 244 Query: 244 AELI 247 +L+ Sbjct: 245 TQLL 248 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 42.8 bits (101), Expect = 8e-05 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 17/199 (8%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71 + + + ++L + V A +GP+G GKST L+ D G I GE I D Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 Query: 72 WSI--VE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK--ARNEKELLIPDFTRKV 126 + VE RA G + FQ P P I + +A + AR++ EL + Sbjct: 91 PRLDVVELRARVG--MVFQKPNPFPKSI---YENVAYGPRIHGLARSKAEL--DEIVETS 143 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 + D L P G SGG+++ I + + P + ++DE S LD A Sbjct: 144 LRKAGLWEEVKDRLHEP-GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202 Query: 187 AQGVNALRSQDRSFLIITH 205 + ++ LR + +I+TH Sbjct: 203 EELIDELRQN-YTIVIVTH 220 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 42.9 bits (101), Expect = 8e-05 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 I+R L+L++EP V A++G NG+GKSTL L+G ++T G Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG----DLTGG 54 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 43.0 bits (101), Expect = 8e-05 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 13/220 (5%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILDWS 73 E ++G++L +E+ A++GP+G GKST L+ D G++ +G++I + Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 Query: 74 I-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 V + K + + FQ P P I + + + +K +L +++ Sbjct: 79 EDVVQLRKQVGMVFQQPNPFPFSI---YENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191 + + + L+L SGG+++ I ++ ++P + +LDE S LD I + +I + Sbjct: 136 DEVKDHLHESALSL--SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 LR Q + +++TH + I T L G +I+ D Sbjct: 194 -LRDQ-YTIILVTHSMHQASRISDKTAFFL-TGNLIEFAD 230 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 42.8 bits (101), Expect = 8e-05 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82 V I G +GSGK+TL+ L+ +++ D LY G L AS+ + Sbjct: 17 TVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAA-----ASEHV 63 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 42.7 bits (101), Expect = 8e-05 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 40/206 (19%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESILDWS 73 ++ +NL + ++V A +GP+G GKSTL L + ++ YE+ G+IL GE+IL Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTL--LRTFNRMYELYPEQRAEGEILLDGENILTPK 86 Query: 74 I---VERASKGIFLAFQYPVEIPGIIMMQFLKIA----LNEQRKARNEKELLIPDFTRKV 126 + RA G + FQ P P M + IA L E + +R E + + K Sbjct: 87 QDIALLRAKVG--MVFQKPTPFP---MSIYDNIAFGVRLFE-KLSRAEMDERVEWALTK- 139 Query: 127 RKITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD- 179 A L + +K L+ SGG+++ IA + +R P + +LDE S LD Sbjct: 140 ----AAL---WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR---PEVLLLDEPCSALDP 189 Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205 I +I + + L+ QD + +I+TH Sbjct: 190 ISTGRI-EELITELK-QDYTVVIVTH 213 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 42.6 bits (101), Expect = 9e-05 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGES 68 R ++ + P EV+ I+G +GSGK+TL LS AG++ Y+ Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRD 69 Score = 28.7 bits (65), Expect = 1.6 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 28/97 (28%) Query: 148 FSGGEKKIAEILQMRL-------LEPSLCILDETDSGLDIDALKIAAQGVNALRS----Q 196 FSGG +Q RL P L +DE GLD+ + A+ ++ LR Sbjct: 152 FSGG-------MQQRLQIARNLVTHPRLVFMDEPTGGLDV---SVQARLLDLLRGLVREL 201 Query: 197 DRSFLIITH---YQRLLNYIKPDTIHVLHNGKIIKTG 230 + +I+TH RLL + V+ G+++++G Sbjct: 202 GLAVVIVTHDLAVARLL----AHRLLVMKQGRVVESG 234 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 42.8 bits (101), Expect = 9e-05 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 25/243 (10%) Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD-YEITA-GD 61 + L+ +I++ ++ ++P E+ ++G GSG STL ++ + D + I G Sbjct: 62 FRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 I Y G + + I + + + V P + + + L A + + + Sbjct: 122 ITYDGITPEE--IKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179 Query: 122 FTRKVRKIT-AELGINM--------DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172 + + + + A G++ D ++ G SGGE+K I + L + D Sbjct: 180 YAKHIADVYMATYGLSHTRNTKVGNDFVR-----GVSGGERKRVSIAEASLGGAKIQCWD 234 Query: 173 ETDSGLDIDALKIAAQGVNALRSQDR---SFLIITHYQRLLN-YIKPDTIHVLHNGKIIK 228 GLD A + + AL++ + ++ YQ + Y D + VL+ G I Sbjct: 235 NATRGLDSAT---ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY 291 Query: 229 TGD 231 G Sbjct: 292 FGP 294 Score = 36.2 bits (84), Expect = 0.007 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDILYKG 66 V+P + A+MG +G+GK+TL +L+ IT GD L G Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 42.3 bits (100), Expect = 1e-04 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 54/232 (23%) Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGH----------KDYEITAGDILYKGESILDW 72 N+ + VAI+G GSGKSTL L+G + ITAG K L Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAG----KKNKKL-- 80 Query: 73 SIVERASKGIFLAFQYP--------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR 124 + K + + FQ+P VE I +E++ + Sbjct: 81 ---KPLRKKVGIVFQFPEHQLFEETVE---------KDICFGPMNFGVSEEDAK-----Q 123 Query: 125 KVRKITAELGINMDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDI 180 K R++ +G+ ++L R P L SGG+ + IA +L M EP + +LDE +GLD Sbjct: 124 KAREMIELVGLPEELLARSPFEL--SGGQMRRVAIAGVLAM---EPEVLVLDEPTAGLDP 178 Query: 181 DALKIAAQGVNAL-RSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230 K + L + + + +++TH + Y D I V+H G + G Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY--ADQIVVMHKGTVFLQG 228 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 42.4 bits (100), Expect = 1e-04 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 46/244 (18%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 + +KN+ K ++T +I LNL ++ +V ++GP+G GK+T+ L++G + + T G Sbjct: 7 VVLKNI-TKRFGSNT-VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE--KPTEGQ 62 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIP----------GIIMMQFLKIALNEQRKA 111 I GE + SI +R I + FQ P G+ M+ K E+RK Sbjct: 63 IFIDGEDVTHRSIQQR---DICMVFQSYALFPHMSLGENVGYGLKMLGVPK----EERKQ 115 Query: 112 RNEKELLIPDFT----RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPS 167 R ++ L + D R V +I SGG+++ + + +L+P Sbjct: 116 RVKEALELVDLAGFEDRYVDQI-------------------SGGQQQRVALARALILKPK 156 Query: 168 LCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226 + + DE S LD + + + + L+ Q + + L +TH Q + DT+ V++ GKI Sbjct: 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVIVMNKGKI 215 Query: 227 IKTG 230 ++ G Sbjct: 216 MQIG 219 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 41.9 bits (98), Expect = 2e-04 Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 17/200 (8%) Query: 15 DTE-IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---ITAGDILYKGESIL 70 DT+ I+ G+++++ S+V AI+GP+G GKST L+ + E G + + ++I Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77 Query: 71 DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 + + + R + + + P P M + +A + K L I D K Sbjct: 78 ERRVNLNRLRRQVSMVHPKPNLFP---MSVYDNVAYGVKIVGWRPK-LEIDDIVESALK- 132 Query: 130 TAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185 A+L D +K ++ L SGG+++ I + ++P + ++DE GLD I ++K+ Sbjct: 133 DADL---WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189 Query: 186 AAQGVNALRSQDRSFLIITH 205 + + + + +I++H Sbjct: 190 ESLIQSLRLRSELTMVIVSH 209 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 41.8 bits (98), Expect = 2e-04 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 31/216 (14%) Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIVERASKGIFLA 85 P E ++++G +GSGKST L + E G+I++ G+ I L ++ + I Sbjct: 349 PGETLSLVGESGSGKSTTGRALL--RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406 Query: 86 FQYPV------EIPGIIMMQFLKI-ALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138 FQ P + G +M+ L++ L + A +V + +G+ + Sbjct: 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----------ARVAWLLERVGLLPE 455 Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198 R + FSGG+++ I + L P + I DE S LD+ I Q +N L R Sbjct: 456 HAWRYPH-EFSGGQRQRICIARALALNPKVIIADEAVSALDV---SIRGQIINLLLDLQR 511 Query: 199 ----SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 ++L I+H ++ I + V++ G+I++ G Sbjct: 512 DFGIAYLFISHDMAVVERIS-HRVAVMYLGQIVEIG 546 Score = 29.1 bits (65), Expect = 1.0 Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 42/257 (16%) Query: 1 MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58 +L ++NL + +I +R L+ ++ E +AI+G +GSGKS + L+ + E Sbjct: 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA--LALMRLLEQA 69 Query: 59 AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI----IMMQFLK--IALN------ 106 G + + + +L + R+ + I L+ Q ++ + + M F + +LN Sbjct: 70 GGLV--QCDKML---LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVG 124 Query: 107 EQ--RKARNEKELLIPDFTRKVRKITAELGI--NMDMLKR-PLNLGFSGGEKK---IAEI 158 EQ R + + + +++ ++ I +L R P L SGG ++ IA Sbjct: 125 EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL--SGGMRQRVMIAMA 182 Query: 159 LQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR--SQDRSF--LIITHYQRLLNYIK 214 L R P++ I DE + LD+ I AQ + ++ ++ S + ITH ++ I Sbjct: 183 LSCR---PAVLIADEPTTALDV---TIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236 Query: 215 PDTIHVLHNGKIIKTGD 231 D + V++ G+ ++TG Sbjct: 237 -DRVLVMYQGEAVETGS 252 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 41.7 bits (98), Expect = 2e-04 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDW 72 + I ++L V ++ AIMGP+G GK+TL L+ G + G+IL+ GE+I + Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEILFDGENIPAMSR 76 Query: 73 SIVERASKGIFLAFQ 87 S + K + + FQ Sbjct: 77 SRLYTVRKRMSMLFQ 91 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 41.9 bits (99), Expect = 2e-04 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TA 59 M+E N+ +K + ++L + E + + GP+G+GK+TL LL G + Sbjct: 1 MIEFHNV-SKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG---ALTPSR 56 Query: 60 GDILYKGESILD 71 G + GE + Sbjct: 57 GQVRIAGEDVNR 68 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 41.3 bits (97), Expect = 2e-04 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 46/220 (20%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI-LYKGESILDWS 73 D I+ + L + P + ++G NG+GKSTL LL+G + +G+I L KG + Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG--ELAPVSGEIGLAKGIKL---- 377 Query: 74 IVERASKGIF----LAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 G F L F E P +Q L R A E E +K+R Sbjct: 378 -------GYFAQHQLEFLRADESP----LQHL------ARLAPQELE-------QKLRDY 413 Query: 130 TAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 G D + FSGGEK +A I+ R P+L +LDE + LD+D + Sbjct: 414 LGGFGFQGDKVTEETRR-FSGGEKARLVLALIVWQR---PNLLLLDEPTNHLDLDMRQAL 469 Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226 + AL + + ++++H + LL D ++++H+GK+ Sbjct: 470 TE---ALIDFEGALVVVSHDRHLLRSTT-DDLYLVHDGKV 505 Score = 39.4 bits (92), Expect = 0.001 Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 37/218 (16%) Query: 11 IVDTDTEIIRGLNL-------KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA--GD 61 IV + +I RG+ + + P + V ++G NG GKSTL LL EI+A G Sbjct: 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN----EISADGGS 57 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118 + G L W E + A +Y I G + L+ L+ RN+ + Sbjct: 58 YTFPGNWQLAWVNQETPALPQ-PALEYV--IDGDREYRQLEAQLH-DANERNDGHAIATI 113 Query: 119 ------IPDFTRKVR--KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI 170 I +T + R + LG + + L+RP++ FSGG + + Q + L + Sbjct: 114 HGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS-DFSGGWRMRLNLAQALICRSDLLL 172 Query: 171 LDETDSGLDIDA-------LKIAAQGVNALRSQDRSFL 201 LDE + LD+DA LK + QG L S DR FL Sbjct: 173 LDEPTNHLDLDAVIWLEKWLK-SYQGTLILISHDRDFL 209 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 41.4 bits (97), Expect = 2e-04 Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 27/243 (11%) Query: 1 MLEIKNLRAKIVDTDTEIIRGL---NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57 M+++ N+ K+ T+ I+ L +L V ++ ++G +G+GKSTL ++ + Sbjct: 1 MIKLSNI-TKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RP 57 Query: 58 TAGDILYKGESILDWSIVE--RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115 T+G ++ G+ + S E +A + I + FQ+ + + + + L ++E Sbjct: 58 TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI 117 Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175 + RKV ++ A +G+ P NL SGG+K+ I + P + + DE Sbjct: 118 K-------RKVTELLALVGLGDKHDSYPSNL--SGGQKQRVAIARALASNPKVLLCDEAT 168 Query: 176 SGLDIDALKIAAQGVNAL-----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 S LD Q + L R + L+ITH ++ I D + V+ NG++I+ G Sbjct: 169 SALD----PATTQSILELLKEINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQG 223 Query: 231 DYS 233 S Sbjct: 224 TVS 226 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 41.2 bits (97), Expect = 2e-04 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 36/225 (16%) Query: 1 MLEIKNLRA--KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEI 57 +L++K+LR D D + LN + E + I+G +GSGKS ++ L G Sbjct: 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71 Query: 58 TAGDILYKGESILDWSIVE----RASKGIFLAFQYPVEIPGIIM------MQFLKIALNE 107 G + G IL+ E RA + I + FQ P+ M M+ L + Sbjct: 72 IGGSATFNGREILNLPEKELNKLRAEQ-ISMIFQDPMTSLNPYMRVGEQLMEVLML---- 126 Query: 108 QRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLL 164 K ++ E F VR + A + M ++ + + FSGG ++ I L Sbjct: 127 -HKGMSKAEA----FEESVRMLDA---VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC 178 Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF----LIITH 205 P L I DE + LD+ + AQ + L R F ++ITH Sbjct: 179 RPKLLIADEPTTALDV---TVQAQIMTLLNELKREFNTAIIMITH 220 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 41.0 bits (96), Expect = 3e-04 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 40/180 (22%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 + + LN ++ +A++GPNG GKST+ L+SG + + ++G + R Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG--ELQPSSGTVF-------------R 568 Query: 78 ASKGIFLAF-QYPVE------IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130 ++K F Q+ V+ P + MM+ EQ K+R Sbjct: 569 SAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP-EQ----------------KLRAHL 611 Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190 G+ ++ +P+ SGG+K ++ +P + +LDE + LD+DA++ QG+ Sbjct: 612 GSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670 Score = 41.0 bits (96), Expect = 3e-04 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 108 QRKARNEKEL-LIPDFTRKVR--KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL 164 QR K L LI +T + R I A L +M + FSGG + + + + Sbjct: 303 QRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT-FSGGWRMRIALARALFI 361 Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224 EP L +LDE + LD+ A+ L ++F++++H + LN + D +H LH Sbjct: 362 EPDLLLLDEPTNHLDLHAVLWLE---TYLLKWPKTFIVVSHAREFLNTVVTDILH-LHGQ 417 Query: 225 KIIK-TGDYSI 234 K++ GDY Sbjct: 418 KLVTYKGDYDT 428 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 40.9 bits (96), Expect = 3e-04 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 45/222 (20%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80 ++ + + +V +GPNG+GKST +++G+ +G + GE +L + + Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNPKEVQRNI 77 Query: 81 GI---------------FLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125 G +L F I GI M+ L ++ + E L P+ +K Sbjct: 78 GYLPEHNPLYLDMYVREYLQF-----IAGIYGMK--GQLLKQRVEEMIELVGLRPEQHKK 130 Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185 + ++ S G ++ + Q + +P + ILDE +GLD + L + Sbjct: 131 IGQL-------------------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL-V 170 Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227 + V +D++ ++ TH + + I I +++ GKI+ Sbjct: 171 EIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI-IINKGKIV 211 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 40.9 bits (97), Expect = 3e-04 Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 49/217 (22%) Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLA 85 + +V I+GPNG GK+T +LSG E+ L E W V + +G L Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSG----ELIPN--LGDYEEEPSWDEVLKRFRGTEL- 148 Query: 86 FQYPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPD-FTRKVRKI---TAELGINMDML 140 Y F K+ E + + + LIP F KVR++ E G +++ Sbjct: 149 QNY-----------FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVV 197 Query: 141 KRPLNLG---------FSGGEKKIAEILQMRLL-------EPSLCILDETDSGLDIDALK 184 +R L L SGGE LQ R+ + DE S LDI Sbjct: 198 ER-LGLENILDRDISELSGGE------LQ-RVAIAAALLRDADFYFFDEPTSYLDIRQRL 249 Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVL 221 A+ + L ++ + L++ H +L+Y+ D +H+ Sbjct: 250 NVARLIREL-AEGKYVLVVEHDLAVLDYLA-DNVHIA 284 Score = 37.5 bits (88), Expect = 0.004 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 5/33 (15%) Query: 24 LKVEP-----SEVVAIMGPNGSGKSTLSYLLSG 51 L+VE EV+ I+GPNG GK+T + LL+G Sbjct: 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 40.5 bits (95), Expect = 4e-04 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69 ++RG++ ++ P E V I+G GSGKSTL LL+ + E+ G+I G I Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTL--LLTFMRMVEVCGGEIRVNGREI 1374 Score = 31.3 bits (71), Expect = 0.22 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKST-LSYLLSGHKDYEITAGDIL 63 ++R +++ V ++ ++G GSGKST L LLS +EI+ G + Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS---QFEISEGRVW 718 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 40.3 bits (95), Expect = 5e-04 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 +E +NL +K D +I L+ K+ P +V ++GPNG+GKSTL +++G Sbjct: 323 IEAENL-SKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 Score = 37.6 bits (88), Expect = 0.003 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYE 56 K+V EI++ ++L P + ++G NG+GKSTL +++G K++ Sbjct: 12 KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN 59 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 40.1 bits (94), Expect = 5e-04 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 M+ + + + LN + E+V ++G +G+GKST L+ G + + T G Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE--KPTRG 58 Query: 61 DILYKGESI 69 I + G+ + Sbjct: 59 KIRFNGQDL 67 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 40.0 bits (94), Expect = 6e-04 Identities = 17/29 (58%), Positives = 23/29 (79%) Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 +L VE E VAI+GP+G+GKSTL L++G Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAG 47 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 40.0 bits (94), Expect = 6e-04 Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 + GL+ + E + + GPNG GK+TL +L+G Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 39.8 bits (93), Expect = 7e-04 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 29/218 (13%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IVERA 78 ++ ++E VA++G GSGKSTL + + ++G I G I + +++ Sbjct: 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKNLKKL 83 Query: 79 SKGIFLAFQYPVE------IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 K + L FQ+P + + +E +A+ K K + Sbjct: 84 RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED-EAKE-----------KALKWLKK 131 Query: 133 LGINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191 +G++ D++ K P L SGG+ + I + EP + LDE +GLD + K Q Sbjct: 132 VGLSEDLISKSPFEL--SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189 Query: 192 ALRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIK 228 + + +++TH + Y D + VL +GK+IK Sbjct: 190 DYQKAGHTVILVTHNMDDVAEY--ADDVLVLEHGKLIK 225 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 39.6 bits (92), Expect = 8e-04 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 22/170 (12%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 + L +++ AI+GPNG GKSTL LS + G + GE I ++ E Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS--RLMTPAHGHVWLDGEHIQHYASKEV 79 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-------KVRKIT 130 A + LA PG I +Q L + R + P FTR V K Sbjct: 80 ARRIGLLAQN--ATTPGDITVQEL------VARGRYPHQ---PLFTRWRKEDEEAVTKAM 128 Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180 GI + + ++ SGG+++ A I + E ++ +LDE + LDI Sbjct: 129 QATGIT-HLADQSVDT-LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 39.2 bits (91), Expect = 0.001 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 +L + L T + + L + V P E ++G NG+GK+T +L+G D +T+G Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--DTTVTSG 1994 Query: 61 DILYKGESIL 70 D G+SIL Sbjct: 1995 DATVAGKSIL 2004 Score = 29.6 bits (66), Expect = 0.71 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69 LN+ +++ A +G NG+GK+T +L+G T+G +L G+ I Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDI 994 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 39.3 bits (92), Expect = 0.001 Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69 T+++ ++L + ++VA++GP+GSGK+TL +++G + T+G I + G + Sbjct: 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 38.9 bits (91), Expect = 0.001 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 52/251 (20%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS-----TLSYLLSGHKDYE 56 +E++N+ + ++ G++L ++ V+A++G +GSGKS L L +G Sbjct: 5 IELRNIA---LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG---VR 58 Query: 57 ITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI---IMMQFLKIALNEQRKARN 113 TAG +L G+ + P + G +MQ + A N Sbjct: 59 QTAGRVLLDGKPVA------------------PCALRGRKIATIMQNPRSAFNPLHTMHT 100 Query: 114 E-----KELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLE 165 L P + +G ++ R L L SGG + I L E Sbjct: 101 HARETCLALGKPADDATLTAALEAVG--LENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 Query: 166 PSLCILDETDSGLDIDA-LKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHV 220 I DE + LD+ A +I + ++ + L++TH RL D + V Sbjct: 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL-----ADDVAV 213 Query: 221 LHNGKIIKTGD 231 + +G+I++ GD Sbjct: 214 MSHGRIVEQGD 224 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 38.5 bits (89), Expect = 0.002 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYKGESILDWSI 74 ++LK+ +++A +GP+G GKSTL + L+ G K G +LY+ +I D I Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK----VEGRLLYRDRNIYDSQI 94 Query: 75 VE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAE 132 + + + + FQ P P I + IA + + + L+ D R+ I E Sbjct: 95 NSVKLRRQVGMVFQRPNPFPKSI---YENIAFAPRANGYKGNLDELVEDSLRRA-AIWEE 150 Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 + D LK SGG+++ I + ++P + ++DE S LD Sbjct: 151 V---KDKLKEK-GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 38.5 bits (90), Expect = 0.002 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 16/178 (8%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61 L I N+R + ++ ++L V+ E V ++GP+G GK+TL +++G + TAG Sbjct: 5 LSIDNIRKRF--GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGT 60 Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 I G I ++ GI FQ P + + + L + R E Sbjct: 61 IYQGGRDITRLP-PQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVA----- 112 Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 +V ++ +G+ K P L SGG+++ + + P L +LDE S LD Sbjct: 113 --ERVAELLDLVGLPGSERKYPGQL--SGGQQQRVALARALATSPGLLLLDEPLSALD 166 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 38.5 bits (89), Expect = 0.002 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 29/220 (13%) Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGH----------KDYEITAGDILYKGESILDW 72 +L + ++V ++G GSGKST+ L +G DY I A + Sbjct: 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPAN--------LKKI 82 Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132 V+R K I L FQ+P E IA N++E +KV ++ Sbjct: 83 KEVKRLRKEIGLVFQFP-EYQLFQETIEKDIAFGPVNLGENKQEAY-----KKVPELLKL 136 Query: 133 LGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191 + + D +KR P L SGG+K+ + + ++ + +LDE GLD + Sbjct: 137 VQLPEDYVKRSPFEL--SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 194 Query: 192 AL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 L + + +++TH + I + I V+H GK+I G Sbjct: 195 RLNKEYKKRIIMVTHNMDQVLRIADEVI-VMHEGKVISIG 233 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 38.2 bits (89), Expect = 0.002 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 22/215 (10%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE- 76 ++ GL+ ++ PSE V I+G G+GKS++ L + E+ G IL G I + +++ Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIVELERGRILIDGCDISKFGLMDL 1311 Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136 R GI Q PV G + +F NE A + L +R+ + LG++ Sbjct: 1312 RKVLGIIP--QAPVLFSGTV--RFNLDPFNEHNDADLWESLERAHLKDVIRRNS--LGLD 1365 Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI--DALKIAAQGVNALR 194 ++ + N FS G++++ + + L + +LDE + +D+ DAL Q +R Sbjct: 1366 AEVSEAGEN--FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL---IQ--KTIR 1418 Query: 195 SQDRS--FLIITHYQRLLNYIKPDTIHVLHNGKII 227 + +S LII H RL I D I VL G+++ Sbjct: 1419 EEFKSCTMLIIAH--RLNTIIDCDRILVLDAGRVV 1451 Score = 28.9 bits (65), Expect = 1.4 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTL 45 +NL V +VAI+G G GK++L Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSL 659 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 38.1 bits (88), Expect = 0.002 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 143 PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFL 201 P SGG+K+ I + L EP + +LDE S LD ++ K+ + + ++ + D++ + Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413 Query: 202 IITHYQRLLNYIKPDTIHVLHN 223 I H R+ + + D I V +N Sbjct: 1414 TIAH--RIASIKRSDKIVVFNN 1433 Score = 37.7 bits (87), Expect = 0.003 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 115 KELLIPDFTRKV-RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173 K++LI DF + K +G N L SGG+K+ I + + P + ILDE Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKL--------SGGQKQRISIARAIIRNPKILILDE 605 Query: 174 TDSGLDIDALKIAAQGVNALR-SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232 S LD + + + +N L+ +++R +II H + Y +TI VL N + T D Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY--ANTIFVLSNRERGSTVDV 663 Query: 233 SI 234 I Sbjct: 664 DI 665 Score = 33.1 bits (75), Expect = 0.062 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 2 LEIKNLRAKIVDT--DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59 ++ KN+R DT D EI + LN + + A +G +G GKST+ L+ + Y+ T Sbjct: 383 IQFKNVRFH-YDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI--ERLYDPTE 439 Query: 60 GDIL 63 GDI+ Sbjct: 440 GDII 443 Score = 27.3 bits (60), Expect = 4.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49 I + L + + AI+G GSGKST+ LL Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 38.1 bits (89), Expect = 0.002 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 ML+I +L A + +NL +E E++ ++GP+G GK+TL L++G Y+ G Sbjct: 1 MLQISHLYADY--GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HG 56 Query: 61 DILYKGESI 69 I G+ + Sbjct: 57 SITLDGKPV 65 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 38.1 bits (88), Expect = 0.002 Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 + ++L + E+VA++GP+GSGKSTL LSG Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52 >gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase. Length = 468 Score = 37.9 bits (88), Expect = 0.002 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 30 EVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKGESILDWSIVERASKGI 82 +VV +MGP GSGKS L+ L+ H EI D +Y G +L + KG+ Sbjct: 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGV 77 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 37.9 bits (88), Expect = 0.002 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 38/241 (15%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71 D ++G+++ + V A++GP+G GKST L+ D A G + G+ I Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 Query: 72 --WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129 ++VE K + + FQ P P I I+ ++ LL R + Sbjct: 117 DGVNLVE-LRKRVGMVFQSPNPFPKSIREN---ISYGPRKHGDINTGLLARLLGRDDKDA 172 Query: 130 TAELGINMDMLKRPLN----------------LGFSGGEKKIAEILQMRLLEPSLCILDE 173 EL ++R L LG SGG+++ I + ++P + ++DE Sbjct: 173 EDEL------VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDE 226 Query: 174 TDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 S LD IA + L +++ + +++TH + I T L G++++ Sbjct: 227 PASALD----PIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282 Query: 231 D 231 D Sbjct: 283 D 283 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 37.9 bits (88), Expect = 0.003 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 38/201 (18%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYEITAGDILYKGESILDW 72 + + L+ V+ E + + G NG+GK+TL +L+G H + +G I G++ Sbjct: 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE----SGQIQIDGKT---- 74 Query: 73 SIVERASKGIFLAFQYPVEIPGIIM-------MQFLKIALNEQRKARNEKELLIPDFTRK 125 R + F+A Y +PG+ + FL L+ +R + L Sbjct: 75 --ATRGDRSRFMA--YLGHLPGLKADLSTLENLHFLC-GLHGRRAKQMPGSAL------- 122 Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185 L D L R L S G+KK + ++ L L +LDE + LD++ + + Sbjct: 123 ---AIVGLAGYEDTLVRQL----SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 Query: 186 AAQGVNA-LRSQDRSFLIITH 205 + ++A LR + L+ TH Sbjct: 176 VNRMISAHLRGGGAA-LVTTH 195 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 37.8 bits (89), Expect = 0.003 Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 I L+ + P +V I+GPNG+GKSTL +++G Sbjct: 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 Score = 36.3 bits (85), Expect = 0.007 Identities = 13/36 (36%), Positives = 23/36 (63%) Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 K+V +I++ ++L P + ++G NG+GKSTL Sbjct: 14 KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTL 49 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 37.6 bits (87), Expect = 0.003 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD 71 ++L++ ++V I+G NG GKSTL+ L G Y G+IL G ++ Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSA 408 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 36.9 bits (85), Expect = 0.005 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 20/197 (10%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL------SYLLSGHKDYEITAGDILY--KGESIL 70 ++ +N+ V +V A++GP+G GKST + L YE G+I+ +IL Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88 Query: 71 DWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128 + +E + I + FQ P P I F +A + + + +L +R Sbjct: 89 SPEVDPIEVRMR-ISMVFQKPNPFPKSI---FENVAYGLRIRGVKRRSILEERVENALRN 144 Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188 A D L L SGG+++ I + +P + + DE S LD A + Sbjct: 145 -AALWDEVKDRLGD-LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202 Query: 189 GVNALRSQDRSFLIITH 205 ++ L+++ + LI+TH Sbjct: 203 LISDLKNK-VTILIVTH 218 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 36.7 bits (85), Expect = 0.005 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 34/202 (16%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWSI- 74 ++ + L + +++ A +GP+G GKST+ + D G + + G+++ + Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 Query: 75 -VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR------NEKELLIPDFTRKVR 127 VE + I + FQ P P I + IA AR + EL+ R +R Sbjct: 86 PVEVRRR-IGMVFQKPNPFPKSI---YDNIAYG----ARINGYKGDMDELV----ERSLR 133 Query: 128 KITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDAL 183 + A L D +K L L SGG+++ I + ++P + ++DE S LD I L Sbjct: 134 Q--AAL---WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 Query: 184 KIAAQGVNALRSQDRSFLIITH 205 +I + ++ L+ Q + +I+TH Sbjct: 189 RI-EELMHELKEQ-YTIIIVTH 208 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 36.6 bits (85), Expect = 0.006 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 22/78 (28%) Query: 141 KRPLNLG-FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALR- 194 K+ NL SGGEK +A + + ++P+ CILDE D+ LD DA N R Sbjct: 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD-DA--------NVERF 1132 Query: 195 -------SQDRSFLIITH 205 S++ F++ITH Sbjct: 1133 ANLLKEFSKNTQFIVITH 1150 Score = 30.4 bits (69), Expect = 0.48 Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 28 PSEVVAIMGPNGSGKS 43 + I+GPNG GKS Sbjct: 22 DKGITGIVGPNGCGKS 37 >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. Length = 771 Score = 36.3 bits (84), Expect = 0.007 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDID---ALKIAAQGVNALRSQDRSFLIIT 204 FSG K I+ IL + E SL + DE +G D D AL I+ + L Q+ LI T Sbjct: 386 FSGHMKNISAILS-KTTENSLVLFDELGAGTDPDEGSALAISI--LEYLLKQNAQVLITT 442 Query: 205 HYQRL 209 HY+ L Sbjct: 443 HYKEL 447 Score = 27.9 bits (62), Expect = 2.7 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS-TLSYLLS 50 + ++N R ++ + LNLK E V+AI GPN GK+ TL L Sbjct: 296 IILENARHPLLKEPKVVPFTLNLKFEKR-VLAITGPNTGGKTVTLKTLGL 344 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 36.3 bits (84), Expect = 0.007 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 36/207 (17%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA----GDILYKGESIL 70 E ++ + + +V A++GP+G GKST+ L+ D I G +L+ G + Sbjct: 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL-IEGCSLKGRVLFDGTDLY 83 Query: 71 DWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR------NEKELLIPDF 122 D + VE + I + FQ P P I + IA AR + EL+ Sbjct: 84 DPRVDPVE-VRRRIGMVFQQPNPFPKSI---YENIAFG----ARINGYTGDMDELV---- 131 Query: 123 TRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179 R +RK D K LN SGG+++ I + +EP + ++DE S LD Sbjct: 132 ERSLRKAAV-----WDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186 Query: 180 -IDALKIAAQGVNALRSQDRSFLIITH 205 I LKI + ++ L+ ++ + +I+TH Sbjct: 187 PISTLKI-EETMHELK-KNFTIVIVTH 211 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 36.0 bits (83), Expect = 0.008 Identities = 15/44 (34%), Positives = 27/44 (61%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 ++++ L AK + +++ L+ VE + V ++G GSGKSTL Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL 1261 Score = 35.7 bits (82), Expect = 0.011 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 36/224 (16%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75 T +++ ++ K+E +++A+ G GSGKS+L ++ G + E + G I + G Sbjct: 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG--ELEPSEGKIKHSGR-------- 488 Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEK----ELLIPDFTRKVRKIT 130 I + Q +PG I + ++ +E R K E I F K + + Sbjct: 489 ------ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542 Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK-IAAQG 189 E GI + SGG++ + + + L +LD + LD+ K I Sbjct: 543 GEGGITL-----------SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591 Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYS 233 + L S L+ + + L K D I +LH G G +S Sbjct: 592 LCKLMSNKTRILVTSKLEHLK---KADKILLLHEGVCYFYGTFS 632 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 36.0 bits (84), Expect = 0.009 Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 67/204 (32%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 MLE+ N + ++ D + NL + + AI G +G+GK++L +SG +T Sbjct: 1 MLEL-NFKQQLGDLCLTV----NLTLPAQGITAIFGRSGAGKTSLINAISG-----LTRP 50 Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-------ARN 113 KG +L+ ++ A KGI L E+R+ AR Sbjct: 51 Q---KGRIVLNGRVLFDAEKGICLP--------------------PEKRRIGYVFQDAR- 86 Query: 114 EKELLIPDFTRKVR----------------KITAELGINMDMLKR-PLNLGFSGGEKKIA 156 L P + VR KI A LGI +L R P +L SGGEK+ Sbjct: 87 ----LFPHYK--VRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSL--SGGEKQRV 137 Query: 157 EILQMRLLEPSLCILDETDSGLDI 180 I + L P L ++DE + LD+ Sbjct: 138 AIGRALLTAPELLLMDEPLASLDL 161 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 36.1 bits (83), Expect = 0.009 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 21/200 (10%) Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDW 72 ++ +++ + V AI+GP+G GKST+ ++ D +A G IL I D Sbjct: 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 Query: 73 SIVERA-SKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVR-- 127 + + + + + FQ P P + + LN R R+E + ++ ++V Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALW 135 Query: 128 -KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185 ++ L N L SGG+++ I + ++P + ++DE S LD I LKI Sbjct: 136 DEVKDRLKSNAMEL--------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187 Query: 186 AAQGVNALRSQDRSFLIITH 205 + + L+ + + +I+TH Sbjct: 188 -EELIEELKEK-YTIIIVTH 205 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 36.0 bits (83), Expect = 0.009 Identities = 16/30 (53%), Positives = 23/30 (76%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 ++ +V E+V I+G NGSGKSTLS L++G Sbjct: 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 35.8 bits (83), Expect = 0.010 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 22/213 (10%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EI 57 LE++NL + D + + +++++ + V A +GP+G GKSTL + D I Sbjct: 26 LEVRNL--NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83 Query: 58 TAGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116 G+I G++I D + V + + + FQ P P I + + + + N + Sbjct: 84 E-GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSI---YENVVYGLRLQGINNRR 139 Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDE 173 +L R +R A L D +K L+ G SGG+++ I + +EP + +LDE Sbjct: 140 VLDEAVERSLRG--AAL---WDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194 Query: 174 TDSGLD-IDALKIAAQGVNALRSQDRSFLIITH 205 S LD I LKI + + L+S+ + +I+TH Sbjct: 195 PTSALDPISTLKI-EELITELKSK-YTIVIVTH 225 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 36.1 bits (83), Expect = 0.010 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 141 KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF 200 K P++L SGG+++ I + +EP + + DE S LD + + + + L + ++ Sbjct: 148 KYPVHL--SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 +++TH ++ I LH GKI + G Sbjct: 206 VVVTHEMGFARHVSSHVI-FLHQGKIEEEGA 235 Score = 33.8 bits (77), Expect = 0.039 Identities = 12/29 (41%), Positives = 23/29 (79%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 E+++G++L+ +V++I+G +GSGKST Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTF 47 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 35.8 bits (83), Expect = 0.010 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 20/91 (21%) Query: 149 SGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205 SGGE K+A+ L R +L ILDE +GL D +K + + L Q + ++I Sbjct: 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE- 888 Query: 206 YQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236 HN +IKT DY I L Sbjct: 889 ----------------HNLDVIKTADYIIDL 903 Score = 28.8 bits (65), Expect = 1.2 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 8/38 (21%) Query: 18 IIRGL---NLK---VE--PSEVVAIMGPNGSGKSTLSY 47 I+RG NLK VE ++V I G +GSGKS+L++ Sbjct: 3 IVRGAREHNLKNIDVEIPRDKLVVITGLSGSGKSSLAF 40 Score = 28.1 bits (63), Expect = 2.5 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL 45 ++ + + + I G +GSGKSTL Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTL 649 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 35.5 bits (82), Expect = 0.011 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 30/175 (17%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS--- 73 + I +N + E + AI+G GSGKSTL ++ + T G + +I + Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDK 78 Query: 74 IVERASKGIFLAFQYP--------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125 + K I + FQ+P VE I + K+ L ++ K + L+ F+R Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNL-DEVKNYAHRLLMDLGFSRD 137 Query: 126 VRKITAELGINMDMLKRPLNLGFSGGE-KKIAEILQMRLLEPSLCILDETDSGLD 179 V M + P + SGG+ +KIA I+ + + P + +LDE +GLD Sbjct: 138 V------------MSQSPFQM--SGGQMRKIA-IVSILAMNPDIIVLDEPTAGLD 177 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 35.5 bits (82), Expect = 0.013 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 24/227 (10%) Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71 D + + +++ + ++V A++GP+G GKST ++ D A G++ ++G+++ D Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 Query: 72 WSIVERA-SKGIFLAFQYPVEIPGII---MMQFLKIALNEQRKARNEKELLIPDFTRKVR 127 + A + I + FQ P P I + LKI + + +R Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI--------QGYDGDIDERVEESLR 162 Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187 + + + L+L SGG+++ I + +P + ++DE S LD +A Sbjct: 163 RAALWDEVKDQLDSSGLDL--SGGQQQRLCIARAIAPDPEVILMDEPASALD----PVAT 216 Query: 188 QGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231 + L +++ + +I+TH + I T L G++++ D Sbjct: 217 SKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 35.2 bits (81), Expect = 0.015 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 23/117 (19%) Query: 128 KITA--ELGINMDMLKRPLNLGFSGGE---KKIAEILQMRLLEPSLCILDETDSGLDIDA 182 KI A LG++ L RPL+ SGGE K+A L +P+L +LDE +GL Sbjct: 789 KIHALCSLGLDYLPLGRPLS-SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLE 239 +K + +L Q + +II HN ++K DY + L E Sbjct: 848 IKALIYVLQSLTHQGHTVVIIE-----------------HNMHVVKVADYVLELGPE 887 Score = 31.7 bits (72), Expect = 0.16 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 133 LGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189 LG N+ L S EK KIA+ L + P+L +LDE + LD Sbjct: 1693 LGQNLSSL--------SLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 Query: 190 VNALRSQDRSFLIITHYQRLLNY 212 + L S S + I H LL Sbjct: 1745 LRTLVSLGHSVIYIDHDPALLKQ 1767 Score = 27.9 bits (62), Expect = 2.8 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 3/32 (9%) Query: 19 IRGL-NLKVE--PSEVVAIMGPNGSGKSTLSY 47 +R L N+ +E P E+V + G +GSGKS+L++ Sbjct: 13 VRNLKNISIEFCPREIVLLTGVSGSGKSSLAF 44 >gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional. Length = 180 Score = 35.2 bits (82), Expect = 0.017 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62 ++ I GP GSGK+T++ LL+ + ++AG+I Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEI 34 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 35.0 bits (81), Expect = 0.020 Identities = 14/35 (40%), Positives = 23/35 (65%) Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 ++ L+L + + VA++G +G GKSTL LL+G Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 34.8 bits (81), Expect = 0.023 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 1 MLEIKNLRAKIVDTDTEII---RGLNLKVEPSEVVAIMGPNGSGKSTL 45 M+E+KN+ K+ I ++L + E+ ++G +G+GKSTL Sbjct: 1 MIELKNIS-KVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTL 47 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 34.2 bits (79), Expect = 0.032 Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 L +E +E V ++G NG+GKSTL +L+G Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNG 51 Score = 31.8 bits (73), Expect = 0.15 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 10/60 (16%) Query: 149 SGGEKKIAEILQMRL-LEPS-LCILDETDSGLDIDALKI------AAQGVNALRSQDRSF 200 SGGE+ +L RL L+PS L ILDE + LD++ L++ + QG L S DR F Sbjct: 442 SGGERN--RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQF 499 Score = 30.7 bits (70), Expect = 0.38 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 E++N+ +I ++++ + +V+ + +A++GPNG GK+TL L+ G Sbjct: 321 EMENVNYQI--DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 33.7 bits (77), Expect = 0.047 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TAGDILYKG 66 T I++ + ++PS + ++GP SGK+TL L+G D + +G+I Y G Sbjct: 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG 229 Score = 33.3 bits (76), Expect = 0.057 Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 11 IVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG 66 + + +++R + P + A+MG +G+GK+TL +L+G K GDI G Sbjct: 888 VTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 33.3 bits (76), Expect = 0.060 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60 ML + L+ I + + L++ PS + I G NG GKS+L +++G + ++G Sbjct: 1 MLSLHQLQFNIEQKN---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM--QPSSG 55 Query: 61 DILYKGESI 69 +I YK +I Sbjct: 56 NIYYKNCNI 64 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 33.0 bits (75), Expect = 0.070 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 ++R +N+ + E V I+G G+GKS+L+ L + E G+I+ G +I + + Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL--FRINESAEGEIIIDGLNIAKIGLHDL 1358 Query: 78 ASKGIFLAFQYPVEIPGIIMM 98 K I + Q PV G + M Sbjct: 1359 RFK-ITIIPQDPVLFSGSLRM 1378 Score = 28.4 bits (63), Expect = 1.6 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 39/238 (16%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHKDYEITAGDILYKGESILDWSIVER 77 + G+ + +VA++G G GKS+L S LL+ + + G + KG S+ Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA---EMDKVEGHVHMKG------SVA-- 702 Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKELLIPDFTRKVRKITAELGIN 136 ++ Q ++ + ALNE+ + E L+PD E+G Sbjct: 703 -----YVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-- 755 Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK------IAAQGV 190 ++ +NL SGG+K+ + + + + D+ S +D K I +GV Sbjct: 756 ----EKGVNL--SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248 L+++ R +++TH L + D I V+ GKI + G Y L + +AE ++ Sbjct: 810 --LKNKTR--ILVTHGISYLPQV--DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLR 860 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 33.1 bits (75), Expect = 0.071 Identities = 13/25 (52%), Positives = 18/25 (72%) Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGH 52 P EV+ I+GP GSGK+TL+ L+ Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE 25 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 32.9 bits (75), Expect = 0.074 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 38/179 (21%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIVE 76 ++G+ + P E+ + G +G+GKSTL L+ G + +AG I + G I L V Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNREVP 75 Query: 77 RASKGIFLAFQ----------YP-VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125 + I + FQ Y V IP II A + D R+ Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA------------GASGD------DIRRR 117 Query: 126 VRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183 V ++G+ +D K P+ L SGGE++ I + + +P++ + DE LD DAL Sbjct: 118 VSAALDKVGL-LDKAKNFPIQL--SGGEQQRVGIARAVVNKPAVLLADEPTGNLD-DAL 172 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 32.8 bits (76), Expect = 0.081 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52 V+AI GP GSGK T++ +L+ Sbjct: 6 VIAIDGPAGSGKGTVAKILAKK 27 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 32.6 bits (75), Expect = 0.089 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSE--VVAIMGPNGSGKSTLS 46 EI+ + ++ R L+ EP +V I GP G+GKSTL+ Sbjct: 9 DEEIEAVHKPLLR------RLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 >gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Length = 287 Score = 32.0 bits (73), Expect = 0.14 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL--YKGESI 69 V+ IMGP GKS L+ L+ + EI + D + YKG I Sbjct: 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDI 41 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 31.5 bits (71), Expect = 0.20 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 34/202 (16%) Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL------------SYLLSGHKDYEITAGDILYKG 66 +R ++ + +E+ +GP+G GKST+ + GH + D+ KG Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF--LGQDVYGKG 81 Query: 67 ESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126 +D +V R I + FQ P M F +A R R + +L D + Sbjct: 82 ---VDPVVVRRY---IGMVFQQPNPFS---MSIFDNVAFG-LRLNRYKGDL--GDRVKHA 129 Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186 + A D LK L SGG+++ I + EP + +LDE S LD IA Sbjct: 130 LQGAALWDEVKDKLKVS-GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD----PIA 184 Query: 187 AQGVNALR---SQDRSFLIITH 205 + V L +D + ++TH Sbjct: 185 TRRVEELMVELKKDYTIALVTH 206 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 31.6 bits (72), Expect = 0.21 Identities = 11/28 (39%), Positives = 24/28 (85%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 ++ ++L+++P +++ ++GPNG+GKSTL Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTL 46 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 31.3 bits (71), Expect = 0.21 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGE 67 ++LK +V+ ++G NGSGKSTLS ++ G T G + GE Sbjct: 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGG--SLSPTVGKVDRNGE 86 >gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase. Length = 334 Score = 31.3 bits (71), Expect = 0.22 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 30 EVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL--YKGESI 69 +VV IMG GSGKS LS L+ EI D + Y G I Sbjct: 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKI 85 >gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171 Score = 31.2 bits (71), Expect = 0.22 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62 ++ I GP GSGK+T++ +L+ + I+AGDI Sbjct: 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDI 34 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 31.1 bits (71), Expect = 0.24 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTL 45 + L E + ++GP+G+GKS+L Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSL 44 Score = 30.8 bits (70), Expect = 0.36 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 27/103 (26%) Query: 143 PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR----- 194 PL+L SGG+++ IA L M EP + + DE + LD + I AQ V+ +R Sbjct: 139 PLHL--SGGQQQRVAIARALMM---EPQVLLFDEPTAALDPE---ITAQIVSIIRELAET 190 Query: 195 --SQDRSFLIITHYQRLLNYIKPDTIHVLH--NGKIIKTGDYS 233 +Q +I+TH + + V++ NG I++ GD S Sbjct: 191 GITQ----VIVTHE---VEVARKTASRVVYMENGHIVEQGDAS 226 >gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional. Length = 171 Score = 31.2 bits (71), Expect = 0.25 Identities = 13/26 (50%), Positives = 19/26 (73%) Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEI 57 +AI+G +GSGKSTL+ LS H + + Sbjct: 3 IAIIGYSGSGKSTLARKLSQHYNCPV 28 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 31.3 bits (71), Expect = 0.28 Identities = 11/25 (44%), Positives = 17/25 (68%) Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTL 45 +L +E E+ +MG +GSGKS+L Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSL 66 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 30.6 bits (69), Expect = 0.39 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH-KDYE---ITAGDILYKGESIL 70 LNL V+ I GP GSGKSTL L++ + Y I A D KG S+L Sbjct: 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFD---KGRSML 498 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 30.5 bits (69), Expect = 0.48 Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 +I L+ +V + I GPNG GKS+L +L Sbjct: 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500 >gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. Length = 210 Score = 30.3 bits (69), Expect = 0.50 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 32 VAIMGPNGSGKSTLSYLLSG-HKDYEITAGDIL 63 + ++GP GSGK T + ++ + I+ GD+L Sbjct: 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLL 34 >gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase. Length = 232 Score = 29.7 bits (67), Expect = 0.69 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKG 66 VV + G SGKST+S L D + A D+L KG Sbjct: 3 VVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKG 42 >gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase. Length = 244 Score = 29.5 bits (66), Expect = 0.88 Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 12 VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLS 46 VD TE++R + +P + + ++GP GSGK T S Sbjct: 14 VDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQS 48 >gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors. Length = 217 Score = 28.9 bits (65), Expect = 1.1 Identities = 11/35 (31%), Positives = 21/35 (60%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK 65 ++AI GP+G+GKST++ ++ Y +Y+ Sbjct: 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYR 38 >gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 484 Score = 29.2 bits (66), Expect = 1.1 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 8/30 (26%) Query: 23 NLKVEPSE--------VVAIMGPNGSGKST 44 NL V SE V A+MGP G GK+T Sbjct: 242 NLPVLDSEDALLDRGGVFALMGPTGVGKTT 271 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 29.2 bits (66), Expect = 1.2 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%) Query: 22 LNLKVEPSEVV---AIMGPNGSGKSTL-SYLLS 50 N V ++V+ I GP GSGK+TL ++LL+ Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLA 456 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 29.1 bits (65), Expect = 1.2 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 18/176 (10%) Query: 36 GPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI 95 G NG+GK+TL L++G G+IL++ +SI + + F+ + + P + Sbjct: 34 GSNGAGKTTLLKLIAGL--LNPEKGEILFERQSI-KKDLCTYQKQLCFVGHRSGIN-PYL 89 Query: 96 IMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKI 155 + + ++ A EL R + E ++ P L S G+K+ Sbjct: 90 TLRENCLYDIHFSPGAVGITEL--------CRLFSLE-----HLIDYPCGL-LSSGQKRQ 135 Query: 156 AEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLN 211 +L++ + + L +LDE LD +L + R++ + L+ +H LN Sbjct: 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 >gnl|CDD|180564 PRK06446, PRK06446, hypothetical protein; Provisional. Length = 436 Score = 28.6 bits (64), Expect = 1.4 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Query: 114 EKELLIPDFTRKVRKITAE-------LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEP 166 E +LIP F VR++T E I+++ L++ LGF + E + LL Sbjct: 221 EGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRK--ALGFKELKYSDREKIAEALLTE 278 Query: 167 SLCILDETDSG 177 C +D SG Sbjct: 279 PTCNIDGFYSG 289 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 28.7 bits (65), Expect = 1.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 26 VEPSEVVAIMGPNGSGKSTL 45 + + VA++G +G GKSTL Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211 >gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated. Length = 226 Score = 28.5 bits (64), Expect = 1.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 28 PSEVVAIMGPNGSGKSTLS 46 PS VV + GP GSGK+ L+ Sbjct: 43 PSPVVVLAGPVGSGKTHLA 61 >gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. Length = 163 Score = 28.5 bits (64), Expect = 1.6 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Query: 34 IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84 +MG GSGKST++ L+ + GD L+ +I E+ S GI L Sbjct: 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI------EKMSAGIPL 47 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 28.5 bits (64), Expect = 1.7 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 10/44 (22%) Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 L+IKN R+ + E G+NL I+G NGSGKS++ Sbjct: 6 LKIKNFRSH-KSSVVEFDDGINL---------IIGQNGSGKSSI 39 >gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase. Length = 421 Score = 28.2 bits (63), Expect = 1.8 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKG 66 K + +V+ I GP G+GKS L+ L+ + EI + D +Y+G Sbjct: 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRG 60 >gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional. Length = 211 Score = 28.3 bits (63), Expect = 1.8 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 35 MGPNGSGKSTLSYLLSGH-KDYEITAGDIL 63 +GP GSGK T++ +LS Y I+ GD+ Sbjct: 6 LGPPGSGKGTIAKILSNELNYYHISTGDLF 35 >gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. Length = 325 Score = 28.3 bits (63), Expect = 1.8 Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 29 SEVVAIMGPNGSGKSTL 45 + VAI+G +GKSTL Sbjct: 162 VKTVAILGGESTGKSTL 178 >gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed. Length = 712 Score = 27.8 bits (62), Expect = 2.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDY 55 +VAI GP G GKS++S L+ + Y Sbjct: 3 IVAIDGPAGVGKSSVSRALAQYLGY 27 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 28.0 bits (62), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 15/45 (33%) Query: 15 DTEIIRGLNL------------KVEPSE---VVAIMGPNGSGKST 44 DTE+ RG L V+P E V+A++GP G+GK+T Sbjct: 321 DTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTT 365 >gnl|CDD|178856 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed. Length = 307 Score = 27.8 bits (63), Expect = 2.5 Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 31 VVAIMGPNGSGKSTLS 46 V+ I+GP SGK+ L+ Sbjct: 6 VIVIVGPTASGKTALA 21 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 27.8 bits (63), Expect = 2.5 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%) Query: 23 NLKVEPSE-VVAIMGPNGSGKSTL----SYL--LSGHK 53 L +E S V ++G NG GK+ L L H+ Sbjct: 16 ELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHR 53 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 27.9 bits (63), Expect = 2.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Query: 31 VVAIMGPNGSGKST 44 ++AI GP G+GKST Sbjct: 286 IIAIDGPAGAGKST 299 >gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional. Length = 469 Score = 27.8 bits (62), Expect = 2.7 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%) Query: 15 DTEIIR------GLNLKVEPSE--VVAIMGPNGSGKSTLSYLLSG-HKDYEITA 59 D E+IR G L + E +V + G G+GKS +L+G DY TA Sbjct: 183 DDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDYATTA 236 >gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves. Length = 893 Score = 27.7 bits (62), Expect = 2.9 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%) Query: 34 IMGPNGSGKS-TLSYLLS 50 I+GP G+GKS TL+ LL Sbjct: 480 ILGPTGAGKSATLTNLLM 497 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 27.4 bits (62), Expect = 3.4 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 36 GPNGSGKSTLSYLLSGHKDYE 56 GP G+GK+TL+ +++G D Sbjct: 43 GPPGTGKTTLARIIAGATDAP 63 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 27.3 bits (62), Expect = 3.5 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 13/35 (37%) Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG 66 + G +GSGKSTL + LYK Sbjct: 638 TCVTGVSGSGKSTLIN-------------ETLYKA 659 >gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. Length = 179 Score = 27.3 bits (61), Expect = 3.6 Identities = 7/14 (50%), Positives = 12/14 (85%) Query: 32 VAIMGPNGSGKSTL 45 + ++GP+G+GK TL Sbjct: 4 IYVVGPSGAGKDTL 17 >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated. Length = 406 Score = 27.4 bits (61), Expect = 3.8 Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 47 YLLSGHKDYEITAGDILYKGESILD 71 Y+ SGHK Y T ILY E++L Sbjct: 220 YVFSGHKLYGPTGIGILYVKEALLQ 244 >gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional. Length = 318 Score = 27.4 bits (62), Expect = 4.2 Identities = 10/38 (26%), Positives = 23/38 (60%) Query: 7 LRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST 44 L+ ++ + + + LN++ + V+ ++G NG GK+T Sbjct: 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTT 129 >gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional. Length = 253 Score = 27.1 bits (61), Expect = 4.2 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 31 VVAIMGPNGSGKSTLSYLLS 50 +V +G GSGK+TL+ LS Sbjct: 4 IVFFLGTAGSGKTTLTKALS 23 >gnl|CDD|132085 TIGR03041, PS_antenn_a_b, chlorophyll a/b binding light-harvesting protein. This model represents a family of proteins from the Cyanobacteria, closely homologous to and yet distinct from PbsC, a chlorophyll a antenna protein of photosystem II. Members are not univerally present in Cyanobacteria, while the family has several members per genome in Prochlorococcus marinus, with seven members in a strain adapted to low light conditions. These antenna proteins may deliver light energy to photosystem I and/or photosystem II. Length = 321 Score = 26.9 bits (60), Expect = 4.7 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Query: 60 GDILYKGESILDWSIVERASKGIFLAF-------QYPVEIPG 94 G L E++L +S+ A I AF YPVE G Sbjct: 222 GKGLLSAEAVLSYSLAGIAWMAIVAAFWCAVNTTVYPVEFYG 263 >gnl|CDD|184432 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional. Length = 576 Score = 27.1 bits (61), Expect = 4.7 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230 SF + T ++L YI+ T +GK + G Sbjct: 345 SFTVTTKDPKILPYIERITGRDPGSGKTVTGG 376 >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional. Length = 880 Score = 26.9 bits (60), Expect = 4.8 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Query: 31 VVAIMGPNGSGKSTL----SYLLSGHKDYEITAGDILYKGE 67 V I G NGSGKS+L + L G K + T D++ G Sbjct: 25 VTVIHGVNGSGKSSLLEACFFALYGSKALDDTLDDVITIGA 65 >gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. Length = 486 Score = 27.0 bits (60), Expect = 5.1 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 27 EPSEVVAIMGPNGSGKSTLSY 47 P ++ + GP GSGK+T Y Sbjct: 240 RPHGIILVTGPTGSGKTTTLY 260 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 26.9 bits (60), Expect = 5.7 Identities = 8/12 (66%), Positives = 11/12 (91%) Query: 34 IMGPNGSGKSTL 45 ++GP GSGK+TL Sbjct: 116 VIGPPGSGKTTL 127 >gnl|CDD|129031 smart00795, Agro_virD5, Agrobacterium VirD5 protein. The virD operon in Agrobacterium encodes a site-specific endonuclease, and a number of other poorly characterised products. This family represents the VirD5 protein. Length = 780 Score = 26.4 bits (58), Expect = 6.4 Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196 L+PS I DE D D +AL +Q A +S Sbjct: 359 LDPSAWIPDEHDPFEDGEALGPPSQASTANKSN 391 >gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed. Length = 687 Score = 26.5 bits (59), Expect = 6.4 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 11/51 (21%) Query: 32 VAIMGPNGSGKSTLSYLL---SG--HKDYEITAGDILYKGESILDWSIVER 77 + I+ +GK+TL+ + +G HK G++ G ++ DW E+ Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKIHK-----MGEV-EDGTTVTDWMPQEQ 55 >gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family. Length = 185 Score = 26.7 bits (60), Expect = 6.5 Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 31 VVAIMGPNGSGKSTL 45 VV I GPN GKST Sbjct: 1 VVIITGPNMGGKSTY 15 >gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional. Length = 259 Score = 26.2 bits (58), Expect = 7.3 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%) Query: 26 VEPSEVVAIMGPNGSGKSTLSYLL------SGHKDYEITAGDIL 63 +E +E + ++GP+G GK+ L+ L +G K TA D+L Sbjct: 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 26.3 bits (58), Expect = 7.3 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 7/96 (7%) Query: 1 MLEIKNLRAKIVDTD--TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKD-YE 56 +L+I+NL + +D + + +++ + E+ ++G +GSGKS ++ + G KD + Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62 Query: 57 ITAGDILYKGESILDWSIVER---ASKGIFLAFQYP 89 +TA + + +L S ER + + FQ P Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 >gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed. Length = 167 Score = 26.5 bits (59), Expect = 7.5 Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 32 VAIMGPNGSGKSTLSYLLS 50 + ++G GSGKSTL+ L Sbjct: 4 IILIGSGGSGKSTLARQLG 22 >gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase. Length = 329 Score = 26.3 bits (58), Expect = 8.4 Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK 65 V+PSE V ++ L+Y+L+ H Y+ T G++ K Sbjct: 103 VDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELK 142 >gnl|CDD|149610 pfam08616, SPB_interacting, Spindle pole body interacting protein. Yeast YOR129C has been shown to interact with the outer plaque of the spindle pole body. Length = 645 Score = 26.2 bits (58), Expect = 8.7 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 13/42 (30%) Query: 80 KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121 KG L QYP IPG + L EL++PD Sbjct: 13 KGPVLKHQYPENIPGDETLHML-------------AELMLPD 41 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 26.1 bits (57), Expect = 8.8 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLS 50 L+ P ++ I GP+G GKST +LS Sbjct: 105 LENAPKRILLITGPSGCGKSTTIKILS 131 >gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated. Length = 223 Score = 26.1 bits (58), Expect = 9.1 Identities = 8/15 (53%), Positives = 10/15 (66%) Query: 32 VAIMGPNGSGKSTLS 46 VAI G SGK+T + Sbjct: 25 VAIDGITASGKTTFA 39 >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional. Length = 743 Score = 25.9 bits (57), Expect = 9.6 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Query: 99 QFLKIA--LNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRP 143 ++ +IA L+E+R R E I +F +R G+ ++ RP Sbjct: 210 EYKRIAKLLHERRIDR---EHYIEEFVGHLRAEMKAEGVKAEVYGRP 253 >gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit; Provisional. Length = 482 Score = 26.0 bits (58), Expect = 9.9 Identities = 11/34 (32%), Positives = 22/34 (64%) Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57 LK +P + + + GP G GK++L++ L+ +E+ Sbjct: 34 LKGKPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.139 0.386 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,112,553 Number of extensions: 269142 Number of successful extensions: 1279 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1161 Number of HSP's successfully gapped: 411 Length of query: 249 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 158 Effective length of database: 4,028,145 Effective search space: 636446910 Effective search space used: 636446910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.5 bits)