RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
         (249 letters)



>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score =  338 bits (870), Expect = 6e-94
 Identities = 142/245 (57%), Positives = 183/245 (74%), Gaps = 2/245 (0%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L+IK+L   +   D EI++G+NL V+  E+ AIMGPNGSGKSTLS  ++GH  YE+T+G 
Sbjct: 1   LKIKDLHVSV--EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT 58

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           IL+KG+ +L+    ERA  G+FLAFQYP EIPG+  ++FL+ ALN +R AR E+ L + D
Sbjct: 59  ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
           F + ++   A LG++ + L R +N GFSGGEKK  EILQM LLEP L ILDE DSGLDID
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178

Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
           ALKI A+G+N LR  DRSFLIITHYQRLLNYIKPD +HVL +G+I+K+GD  +A +LEE 
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEK 238

Query: 242 GYAEL 246
           GY  +
Sbjct: 239 GYDWV 243


>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
          Length = 248

 Score =  309 bits (793), Expect = 4e-85
 Identities = 139/249 (55%), Positives = 182/249 (73%), Gaps = 2/249 (0%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ML IK+L   +   D  I+RGLNL+V P EV AIMGPNGSGKSTLS  L+G +DYE+T G
Sbjct: 1   MLSIKDLHVSV--EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            + +KG+ +L+ S  +RA +GIF+AFQYPVEIPG+    FL+ ALN  R  R ++ L   
Sbjct: 59  TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRF 118

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           DF   + +  A L +  D+L R +N+GFSGGEKK  +ILQM +LEP LCILDE+DSGLDI
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178

Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
           DALKI A GVN+LR   RSF+I+THYQR+L+YIKPD +HVL+ G+I+K+GD+++   LEE
Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEE 238

Query: 241 NGYAELIKE 249
            GY  L ++
Sbjct: 239 QGYGWLTEQ 247


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 31/202 (15%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
             E+++GLN   E  EV+A++G NG+GKSTL   L+G       +G +L  GE  LD+S 
Sbjct: 4   GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG--LLRPQSGAVLIDGEP-LDYSR 60

Query: 75  --VERASKGIFLAFQYP------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126
             +    + + L FQ P       ++   +    L + L+E                R+V
Sbjct: 61  KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAE------------VERRV 108

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDAL 183
           R+    +G +  + +RP +   SGGEKK   IA  + MR   P + +LDE  +GLD    
Sbjct: 109 REALTAVGAS-GLRERPTHC-LSGGEKKRVAIAGAVAMR---PDVLLLDEPTAGLDPAGR 163

Query: 184 KIAAQGVNALRSQDRSFLIITH 205
           +     +  LR++  + +I TH
Sbjct: 164 EQMLAILRRLRAEGMTVVISTH 185


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 33/241 (13%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LE ++L+    D  TE ++G+N K E  E+VA++GPNG+GKSTL    +G    + T+G
Sbjct: 1   ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG--ILKPTSG 57

Query: 61  DILYKGESI-LDWSIVERASKGIFLAFQYP---VEIPGI---IMMQFLKIALNEQRKARN 113
           ++L KGE I  D   +    K + + FQ P   +  P +   +    L + L+++   + 
Sbjct: 58  EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR 117

Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCI 170
            KE L              +G+     K P +L  SGG+KK   IA IL M+   P + +
Sbjct: 118 VKEAL------------KAVGMEGFENKPPHHL--SGGQKKRVAIAGILAMK---PEIIV 160

Query: 171 LDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229
           LDE  SGLD + A +I  + +  L  +  + +I TH   L+  +  D ++V+ +GKIIK 
Sbjct: 161 LDEPTSGLDPMGASQI-MKLLYDLNKEGITIIISTHDVDLVP-VYADKVYVMSDGKIIKE 218

Query: 230 G 230
           G
Sbjct: 219 G 219


>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 72/245 (29%), Positives = 110/245 (44%), Gaps = 36/245 (14%)

Query: 14  TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
            D   + GLNL V P E VA++GP+G+GKSTL  LL   + Y+  +G IL  G  +    
Sbjct: 351 PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLD 408

Query: 74  IVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
             E RA   + L  Q PV         F    +   R  R       PD T +  +  A 
Sbjct: 409 PAELRAR--MALVPQDPV--------LFAASVMENIRYGR-------PDATDEEVEAAAR 451

Query: 133 LGINMDMLKR-------PLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182
                + +          L    +  SGG+++   I +  L +  + +LDE  S LD ++
Sbjct: 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511

Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG 242
            ++  Q +  L  + R+ LII H  RL   +K D I V+  G+I+  G ++  L + + G
Sbjct: 512 EQLVQQALETL-MKGRTTLIIAH--RLATVLKADRIVVMDQGRIVAQGTHA-EL-IAKGG 566

Query: 243 -YAEL 246
            YA L
Sbjct: 567 LYARL 571


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 21/250 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+  +    D   +  ++L +EP E VA++G +GSGKSTL  L+   + YE  +G 
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQ 388

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118
           IL  G  + D+++     + + L  Q  V     I          +  +A  E+ L    
Sbjct: 389 ILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAY 447

Query: 119 IPDFTRKVRK-ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
             DF  K+   +   +G N  +L        SGG+++   I +  L +  + ILDE  S 
Sbjct: 448 AQDFVDKLPLGLDTPIGENGVLL--------SGGQRQRLAIARALLKDAPILILDEATSA 499

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237
           LD ++ ++    +  L  Q R+ L+I H  RL    K D I V+ +G+I++ G ++  L 
Sbjct: 500 LDNESERLVQAALERLM-QGRTTLVIAH--RLSTIEKADRIVVMDDGRIVERGTHNELLA 556

Query: 238 LEENG-YAEL 246
              NG YA+L
Sbjct: 557 --RNGLYAQL 564


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 22/236 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M++++N+     +++   ++ ++ ++   E VAI+G NGSGKST+S +L+G    +  +G
Sbjct: 7   MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--LKPQSG 64

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNEKELLI 119
           +I   G +I   ++ E   K I + FQ P  +  G  +   +   L  ++    + + +I
Sbjct: 65  EIKIDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDS 176
            D  +KV       G+   + K P NL  SGG+K+   IA +L    L P + I DE+ S
Sbjct: 124 DDLAKKV-------GMEDYLDKEPQNL--SGGQKQRVAIASVLA---LNPEIIIFDESTS 171

Query: 177 GLDIDALKIAAQGVNALRSQDRSFLI-ITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            LD    +   + +  LR   +  LI ITH   +   I  D + V   GK+I  G 
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITH--DMDEAILADKVIVFSEGKLIAQGK 225


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 25/242 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEI 57
           +LE+K +         + + G++L+V P E V + G NG+GKSTL  +LSG   H  ++ 
Sbjct: 1   LLEMKGIVKTF--GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWD- 57

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQ--FL--KIALNEQRKARN 113
             G+I + G  +   +I +    GI +  Q    +P + + +  FL  +I L   R A N
Sbjct: 58  --GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYN 115

Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
                      + + +  EL ++ D + RP+   + GG++++ EI +    +  L ILDE
Sbjct: 116 A-------MYLRAKNLLRELQLDADNVTRPVG-DYGGGQQQLVEIAKALNKQARLLILDE 167

Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGD 231
             S L     +I    +  L++   + + I+H    LN +K   DTI V+ +G+ + T D
Sbjct: 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHK---LNEVKAVCDTICVIRDGQHVATKD 224

Query: 232 YS 233
            S
Sbjct: 225 MS 226



 Score = 32.9 bits (75), Expect = 0.074
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 147 GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
             SGG ++ A + +M L  P + ILDE   G+D+ A     + +N L  +  + ++++
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 25/243 (10%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+       +T  +  ++L + P E VAI+G  GSGKSTL  LL G   Y+ T G 
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--YQPTEGS 521

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118
           +L  G  I      +   + I    Q P    G +      IAL       +++E+L   
Sbjct: 522 VLLDGVDIRQIDPADL-RRNIGYVPQDPRLFYGTLRDN---IALG--APYADDEEILRAA 575

Query: 119 ----IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
               + +F R+        G++M + +R  +L  SGG+++   + +  L +P + +LDE 
Sbjct: 576 ELAGVTEFVRRHPD-----GLDMQIGERGRSL--SGGQRQAVALARALLRDPPILLLDEP 628

Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSI 234
            S +D  + +     +       ++ +++TH   LL+ +  D I V+ NG+I+  G    
Sbjct: 629 TSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLLDLV--DRIIVMDNGRIVADGPKDQ 685

Query: 235 ALD 237
            L+
Sbjct: 686 VLE 688


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 21/237 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEI 57
           +EI++L+        E++ G+NL++  + + A+MGP+GSGKSTL    + L+  + +  +
Sbjct: 4   IEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
            +G++   G+ I    ++E   + + + FQ P  IP + + + + + L   R  +++KEL
Sbjct: 62  -SGEVYLDGQDIFKMDVIE-LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119

Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLCILDET 174
                  +VR    E     D +K  L+      SGG+++   I +    +P + + DE 
Sbjct: 120 -----QERVRW-ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173

Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            + LD  +  KI +  +     +D + +++TH+ +    I  D +  L+ G+I++ G
Sbjct: 174 TANLDPENTAKIESLFLEL--KKDMTIVLVTHFPQQAARIS-DYVAFLYKGQIVEWG 227


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 53/234 (22%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           DT +++G++L +   E+VAI+G +GSGKSTL +LL G  +   T+G++L+ G+S+   S 
Sbjct: 17  DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSS 74

Query: 75  VERAS-KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFT---------- 123
            ERA  +   L F Y          QF                 L+PDFT          
Sbjct: 75  NERAKLRNKKLGFIY----------QF---------------HHLLPDFTALENVAMPLL 109

Query: 124 ----------RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
                      +  ++  ++G+   +  RP  L  SGGE++   I +  + +PSL + DE
Sbjct: 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--SGGERQRVAIARALVNQPSLVLADE 167

Query: 174 TDSGLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
               LD +  KI    +  L R  + SFL++TH   L    K D +  + +G++
Sbjct: 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK--KLDRVLEMKDGQL 219


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 26/218 (11%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
           L+ +V   E++ ++GPNG+GKSTL   ++G        G I + G+ +  WS  E A   
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71

Query: 82  IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
            +L+ Q     P   M  F  + L++  K R E           + ++   LG+  D L 
Sbjct: 72  AYLSQQQT---PPFAMPVFQYLTLHQPDKTRTEA------VASALNEVAEALGL-DDKLG 121

Query: 142 RPLNLGFSGGE----KKIAEILQM-RLLEPS--LCILDETDSGLDIDALKIAAQGVNALR 194
           R +N   SGGE    +  A +LQ+   + P+  L +LDE  + LD+       + ++ L 
Sbjct: 122 RSVN-QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180

Query: 195 SQDRSFLIITHYQRLLN--YIKPDTIHVLHNGKIIKTG 230
            Q  + ++ +H    LN      D + +L  GK++ +G
Sbjct: 181 QQGIAVVMSSHD---LNHTLRHADRVWLLKQGKLLASG 215


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score = 70.2 bits (173), Expect = 5e-13
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          MLE +NL  ++      ++  ++L + P EVVAI+GPNG+GKSTL   LSG  +    +G
Sbjct: 2  MLEARNLSVRL--GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG--ELSPDSG 57

Query: 61 DILYKGESILDWSIVERA 78
          ++   G  + DWS  E A
Sbjct: 58 EVRLNGRPLADWSPAELA 75


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 26/239 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  +++GL   + P EVVA++GP+GSGKST++ LL     Y+ T G +L  G  ++ +  
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQYDH 550

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-----KELLIPDFTRKVRKI 129
                + + L  Q PV   G +      IA         E     K     DF  +    
Sbjct: 551 HYLHRQ-VALVGQEPVLFSGSVREN---IAYGLTDTPDEEIMAAAKAANAHDFIMEFPN- 605

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
               G + ++ ++   L  SGG+K+   I +  + +P + ILDE  S LD +      Q 
Sbjct: 606 ----GYDTEVGEKGSQL--SGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655

Query: 190 VNALRS-QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
           +   RS   R+ L+I H  RL    + D I VL  G +++ G +   L  ++  Y  L+
Sbjct: 656 LQESRSRASRTVLLIAH--RLSTVERADQILVLKKGSVVEMGTHK-QLMEDQGCYKHLV 711


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 27/225 (12%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIV 75
           ++  ++L +E  E V ++G +G GKSTL+ LL G +  +   G + ++G+ +  LD    
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE--KPAQGTVSFRGQDLYQLDRKQR 83

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-----KELLIPDFTRKVRKIT 130
               + + L FQ   + P          A+N +   R       + L   D + +  +I 
Sbjct: 84  RAFRRDVQLVFQ---DSPS---------AVNPRMTVRQIIGEPLRHLTSLDESEQKARIA 131

Query: 131 A---ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
                +G+  +   + L    SGG+ +   I +   ++P L +LDE  S LD+    +  
Sbjct: 132 ELLDMVGLRSEDADK-LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190

Query: 188 QGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           + +  L+     ++L ITH  RL+       + V+  G+I++  D
Sbjct: 191 ELLRKLQQAFGTAYLFITHDLRLVQSFC-QRVAVMDKGQIVEECD 234


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 14/217 (6%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
           T  +  +NL ++  E + I+G NGSGKSTL+  L+G    +   G +L  G    D+S +
Sbjct: 15  TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKL 72

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK-VRKITAELG 134
           +   K + + FQ P         QF+   + E      E   L P   RK V +  AE+G
Sbjct: 73  QGIRKLVGIVFQNP-------ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG 125

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
           +     + P  L  SGG+ +   +  +  +EP   I DE  S LD D+     + +  L 
Sbjct: 126 LEKYRHRSPKTL--SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183

Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            + ++ + ITH    L+    D I V+  GKI+  G+
Sbjct: 184 EKGKTIVYITHNLEELH--DADRIIVMDRGKIVLEGE 218


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 40/245 (16%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  ++ + +P + VAI+GP G+GKSTL  LL   + ++  +G IL  G  I     V RA
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRT---VTRA 405

Query: 79  S--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
           S  + I + FQ            F        R   +   +  PD T +  +  AE    
Sbjct: 406 SLRRNIAVVFQDA--------GLF-------NRSIEDNIRVGRPDATDEEMRAAAERAQA 450

Query: 137 MD-MLKRPLNLGF---------SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
            D + ++P              SGGE++   I +  L +P + ILDE  S LD++     
Sbjct: 451 HDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510

Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG--YA 244
              ++ L  + R+  II H  RL      D I V  NG+++++G +    +L   G  +A
Sbjct: 511 KAALDELM-KGRTTFIIAH--RLSTVRNADRILVFDNGRVVESGSFD---ELVARGGRFA 564

Query: 245 ELIKE 249
            L++ 
Sbjct: 565 ALLRA 569


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 31/221 (14%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEITAGDILYKGESILDWSIVER 77
            ++LKV   E+V++ G NG+GKSTL  +LSG   H  YE   G+I+++GE +   +I + 
Sbjct: 23  NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE---GEIIFEGEELQASNIRDT 79

Query: 78  ASKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
              GI +  Q    +  + +++  FL    NE         +       + +K+ A+L +
Sbjct: 80  ERAGIAIIHQELALVKELSVLENIFLG---NEITPG---GIMDYDAMYLRAQKLLAQLKL 133

Query: 136 NMDMLKRPLNLGFSGGEKKIAEIL-----QMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
           +++      NLG   G++++ EI      Q RLL     ILDE  + L      +    +
Sbjct: 134 DINPATPVGNLG--LGQQQLVEIAKALNKQARLL-----ILDEPTASLTESETAVLLDII 186

Query: 191 NALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKT 229
             L++   + + I+H    LN +K   DTI V+ +G+ I T
Sbjct: 187 RDLKAHGIACIYISHK---LNEVKAISDTICVIRDGRHIGT 224



 Score = 29.9 bits (68), Expect = 0.70
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 149 SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182
           SGG ++ A + +  LL P + ILDE   G+D+ A
Sbjct: 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA 440


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 23/176 (13%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+ NL        + I+RG++L+V   EV  ++G NG GK+TL   L G     + +G 
Sbjct: 1   LEVSNLNVYY--GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--LPVKSGS 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   GE I      ERA  GI    Q     P + + + L   L      R  ++  IPD
Sbjct: 57  IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGL--AALPRRSRK--IPD 112

Query: 122 FTRKVRKITAELGINMDMLKRPL-NLGFSGGEKK---IAEILQMRLLEPSLCILDE 173
                  I     +  +ML R   +L  SGG+++   IA  L  R   P L +LDE
Sbjct: 113 E------IYELFPVLKEMLGRRGGDL--SGGQQQQLAIARALVTR---PKLLLLDE 157


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 19/196 (9%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
           T+++  ++  +   E++AI+G +GSGKSTL +LL G      T+GD+++ G+ +   S  
Sbjct: 22  TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQPMSKLSSA 79

Query: 76  ERA---SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
            +A   ++ +   +Q+   +P    ++ + + L   +K   E          +  ++ A 
Sbjct: 80  AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-------SRALEMLAA 132

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI---DALKIAAQG 189
           +G+      RP  L  SGGE++   I +  +  P L + DE    LD    D++      
Sbjct: 133 VGLEHRANHRPSEL--SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190

Query: 190 VNALRSQDRSFLIITH 205
           +N  R Q  +FL++TH
Sbjct: 191 LN--RLQGTAFLVVTH 204


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 34/242 (14%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
            I+  ++L ++ +    I+G +GSGKSTL+ LL G   ++  +G+IL  G S+ D     
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHT 545

Query: 77  RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
                 +L  Q P    G I+   L   L  +     ++     +         AE  I 
Sbjct: 546 LRQFINYLP-QEPYIFSGSILENLL---LGAKENVSQDEIWAACEI--------AE--IK 591

Query: 137 MDMLKRPLNLG---------FSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIA 186
            D+   PL             SGG+K+   + +  L +  + ILDE+ S LD I   KI 
Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIV 651

Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG-YAE 245
               N L  QD++ + + H  RL    + D I VL +GKII+ G +   LD   NG YA 
Sbjct: 652 N---NLLNLQDKTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQGSHDELLD--RNGFYAS 704

Query: 246 LI 247
           LI
Sbjct: 705 LI 706


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 23/211 (10%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE   L           +R ++  V P E VA++GP+G+GKSTL  LL G  D   T G 
Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGS 378

Query: 62  ILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-KELL 118
           I   G  + D       S    I    Q+P    G I            R AR +  +  
Sbjct: 379 IAVNGVPLADAD---ADSWRDQIAWVPQHPFLFAGTI--------AENIRLARPDASDAE 427

Query: 119 IPDFTRKV--RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
           I     +    +  A L   +D L      G SGG+ +   + +  L +  L +LDE  +
Sbjct: 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487

Query: 177 GLDIDALKIAAQGVNALR--SQDRSFLIITH 205
            LD +     A    ALR  +Q R+ L++TH
Sbjct: 488 HLDAET---EALVTEALRALAQGRTVLLVTH 515


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 64/225 (28%), Positives = 94/225 (41%), Gaps = 40/225 (17%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  ++  V P E VA++GPNG+GKSTL  LL+    Y    G I   G  +       R 
Sbjct: 17  LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--YVAQEGQISVAGHDL-------RR 67

Query: 79  SKGIFLA-----FQYPVEIPGIIMMQFLKI--ALN----EQRKARNEKELLIPDFTRKVR 127
           +    LA     FQ P     + + Q L+   AL+     + + R    L       +  
Sbjct: 68  APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD 127

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
               EL               +GG ++  EI +  L  P+L +LDE   GLD  +     
Sbjct: 128 DKVREL---------------NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172

Query: 188 QGVNAL-RSQDRSFLIITHYQRLLNYIKP-DTIHVLHNGKIIKTG 230
             V AL R Q  S L  TH   L++ I+  D + VLH G+++  G
Sbjct: 173 AHVRALCRDQGLSVLWATH---LVDEIEADDRLVVLHRGRVLADG 214


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score = 63.0 bits (154), Expect = 8e-11
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 17/219 (7%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  L+L V+P E+  I+GPNG+GK+T+  +++G        G +L+ G  +      + A
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT--RPDEGSVLFGGTDLTGLPEHQIA 75

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG--IN 136
             GI   FQ P     + + + L++AL   +        L    + + +    E+   I 
Sbjct: 76  RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFA---SLFFRLSAEEKDRIEEVLETIG 132

Query: 137 M-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195
           + D   R   L  S G+K+  EI  + + +P L +LDE  +G+  +  +  A+ + +L +
Sbjct: 133 LADEADRLAGL-LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-A 190

Query: 196 QDRSFLIITH---YQRLLNYIKPDTIHVLHNGKIIKTGD 231
              S +++ H   + R +     D + VLH G ++  G 
Sbjct: 191 GKHSVVVVEHDMEFVRSIA----DKVTVLHQGSVLAEGS 225


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 35/227 (15%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           ++  ++L ++  E VA++G +G GKSTL+ LL G +    + G++ ++GE +   + + R
Sbjct: 27  VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE--SPSQGNVSWRGEPL---AKLNR 81

Query: 78  ASKGIF-----LAFQYPV-------EIPGIIM--MQFLKIALNEQRKARNEKELLIPDFT 123
           A +  F     + FQ  +        +  II   ++ L ++L++  +     E+L     
Sbjct: 82  AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKAERLARASEML----- 135

Query: 124 RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183
           R V  +         + KRP  L  SGG+ +   + +   +EP L ILDE  S LD+   
Sbjct: 136 RAV-DLDDS-----VLDKRPPQL--SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187

Query: 184 KIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229
               + +  L+ Q   + L ITH  RL+       + V+ NG+I++T
Sbjct: 188 AGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM-VMDNGQIVET 233


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 26/237 (10%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           ++E ++L         E +  +N     +  +A++GPNG+GKSTL    +G    + T+G
Sbjct: 3   LIETRDL-CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG--ILKPTSG 59

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            +L +GE I   +I E   K + L FQ P +       Q     + EQ  A     L + 
Sbjct: 60  SVLIRGEPITKENIRE-VRKFVGLVFQNPDD-------QIFSPTV-EQDIAFGPINLGLD 110

Query: 121 DFT--RKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETD 175
           + T   +V      LG+     + P +L  SGGEKK   IA ++ M   EP + +LDE  
Sbjct: 111 EETVAHRVSSALHMLGLEELRDRVPHHL--SGGEKKRVAIAGVIAM---EPQVLVLDEPT 165

Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLII--THYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +GLD   +K     +N L  +     +I  TH   L+  +  D I+V+  G+I+  G
Sbjct: 166 AGLDPQGVKELIDFLNDL-PETYGMTVIFSTHQLDLVPEMA-DYIYVMDKGRIVAYG 220


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 14/223 (6%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           I+ G+     P E++A++GP+GSGKSTL   L+G        G IL          I++R
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKR 141

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
                F+  Q  +  P + + + L   +L      R  K L   +       + +ELG+ 
Sbjct: 142 TG---FVT-QDDILYPHLTVRETLVFCSL-----LRLPKSLTKQEKILVAESVISELGLT 192

Query: 137 M---DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
                ++      G SGGE+K   I    L+ PSL ILDE  SGLD  A       + +L
Sbjct: 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252

Query: 194 RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
             + ++ +   H      Y   D++ VL  G+ +  G  S A+
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +  +N+R +      E++  LNL ++P E + I+GP+GSGKSTL+ LL   + Y    G 
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQ 513

Query: 62  ILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKEL 117
           +L  G   +D +I + A   + + +  Q  V     I   +         +      K  
Sbjct: 514 VLVDG---VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLA 570

Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
              DF  ++ +     G N ++ ++  NL  SGG+++   I +  +  P + I DE  S 
Sbjct: 571 GAHDFISELPQ-----GYNTEVGEKGANL--SGGQRQRIAIARALVGNPRILIFDEATSA 623

Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237
           LD ++  +  + +  +  + R+ +II H  RL      D I VL  G+I ++G +   L 
Sbjct: 624 LDYESEALIMRNMREI-CRGRTVIIIAH--RLSTVRACDRIIVLEKGQIAESGRHEELLA 680

Query: 238 LEENGYAEL 246
           L+   YA L
Sbjct: 681 LQGL-YARL 688


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 21/237 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT--- 58
           +E++NL       D  I++ +NL +  + V A++GP+G GKST    L+   D       
Sbjct: 4   IEVENLNTYF--DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61

Query: 59  AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
            G I   G  I D ++ V    K + + FQ P   P  I   F  +A   +    +++  
Sbjct: 62  EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSI---FDNVAYGLRIHGEDDE-- 116

Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDET 174
              DF  +  + + +     D +K  L+   LG SGG+++   I +   + P + ++DE 
Sbjct: 117 ---DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173

Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            S LD I   KI    ++ L+ +D + +I+TH  +    +   T   L+ G+II++G
Sbjct: 174 CSALDPISTTKIEDL-IHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLN-GEIIESG 227


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 28/226 (12%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80
            +NL+V   E+V+++GPNG+GK+T+   L+G   Y+ T G IL +G+ I      + A  
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIARM 80

Query: 81  GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL-IPDFTRKVRKITA-------E 132
           G+   FQ+      + +++ L +A ++Q K      LL  P F R   +           
Sbjct: 81  GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER 140

Query: 133 LGINMDMLKRPL-NLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL------DIDALKI 185
           +G+ ++   R   NL +  G+++  EI +  + +P + +LDE  +GL      ++D L  
Sbjct: 141 VGL-LEHANRQAGNLAY--GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL-- 195

Query: 186 AAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
               +  LR++ + + L+I H  +L+  I  D I+V++ G  +  G
Sbjct: 196 ----IAELRNEHNVTVLLIEHDMKLVMGIS-DRIYVVNQGTPLANG 236


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 69/263 (26%), Positives = 127/263 (48%), Gaps = 47/263 (17%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E +N+       +   +R +N K+   + VA++G +GSGKST++ LL+  + Y+I  G+
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGE 399

Query: 62  ILYKGESILDWSI------VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
           IL  G  + D+++      V   S+ + L               F     N    AR E+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHL---------------FNDTIANNIAYARTEQ 444

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGF-----------SGGEKKIAEILQMRLL 164
                 ++R+  +  A +   MD + + ++ G            SGG+++   I +  L 
Sbjct: 445 ------YSREQIEEAARMAYAMDFINK-MDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497

Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224
           +  + ILDE  S LD ++ +     ++ L+ ++R+ L+I H  RL    K D I V+ +G
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAH--RLSTIEKADEILVVEDG 554

Query: 225 KIIKTGDYSIALDLEENG-YAEL 246
           +I++ G ++  L L +NG YA+L
Sbjct: 555 EIVERGTHA-EL-LAQNGVYAQL 575


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 22/201 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESI 69
           +   ++ +NL +  +EV AI+GP+G GKST  Y+ + ++  E+     T G ILY+ ++I
Sbjct: 36  EDHALKNINLDIHENEVTAIIGPSGCGKST--YIKTLNRMVELVPSVKTTGKILYRDQNI 93

Query: 70  LDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
            D S  VE     + + FQ P   P  I   +  +    +     +K+ L     + +R 
Sbjct: 94  FDKSYSVEELRTNVGMVFQKPNPFPKSI---YDNVTYGPKIHGIKDKKTLDEIVEKSLRG 150

Query: 129 ITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALK 184
                    D LK  L+    G SGG+++   I +   +EP + ++DE  S LD I  LK
Sbjct: 151 AAI-----WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205

Query: 185 IAAQGVNALRSQDRSFLIITH 205
           +  + V  L+ +D S +I+TH
Sbjct: 206 V-EELVQELK-KDYSIIIVTH 224


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 26/225 (11%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
             D  +++ +NL V     VA++G  GSGKSTL+ LL G+  Y +T G+I   G  +   
Sbjct: 351 RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSL 408

Query: 73  S-IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
           S  V R  +G+ +  Q PV +          + L      R+  E  +      V+   A
Sbjct: 409 SHSVLR--QGVAMVQQDPVVLADTF---LANVTL-----GRDISEEQVWQALETVQ--LA 456

Query: 132 EL------GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
           EL      G+   + ++  NL  S G+K++  + ++ +  P + ILDE  + +D    + 
Sbjct: 457 ELARSLPDGLYTPLGEQGNNL--SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514

Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             Q + A+R    + ++I H  RL   ++ DTI VLH G+ ++ G
Sbjct: 515 IQQALAAVREHT-TLVVIAH--RLSTIVEADTILVLHRGQAVEQG 556


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEI 57
           +E  NLR  +      +I+G++LK+  + V A+MGP+G GKSTL    + LL  +++  +
Sbjct: 5   IETVNLR--VYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62

Query: 58  TAGDILYKGESILDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
             G++   G +I    +      + + + FQYP   P + +   + I +      +++KE
Sbjct: 63  -EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121

Query: 117 LLIPDFTRKVRKITAELGINMDMLK-RPLNLGFSGGEKK---IAEILQMRLLEPSLCILD 172
           L   +      K  A      D L   P NL  SGG+++   IA  L M+   P + ++D
Sbjct: 122 L--DERVEWALKKAALWDEVKDRLNDYPSNL--SGGQRQRLVIARALAMK---PKILLMD 174

Query: 173 ETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           E  + +D        + +  L+ ++ + +++TH       +  D +  L+ GK+I+ G
Sbjct: 175 EPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVS-DYVAFLYLGKLIEVG 230


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           +  ++ + +  + VAI+GP G+GK+TL  LL   + Y+ T G IL  G   +D + V R 
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG---IDINTVTRE 405

Query: 79  S--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
           S  K I   FQ        +  + ++  +   R+   ++E+              +    
Sbjct: 406 SLRKSIATVFQ-----DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNG 460

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
            D L        SGGE++   I +  L    + +LDE  S LD++        ++ALR +
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K 519

Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232
           +R+  II H  RL      D +  L  G++I+ G +
Sbjct: 520 NRTTFIIAH--RLSTVRNADLVLFLDQGRLIEKGSF 553


>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 48/228 (21%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            +RG++ +++  E +AI+GP+GSGKSTL+ L+ G      T+G +   G  +  W   +R
Sbjct: 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQW---DR 387

Query: 78  ASKGIFLAFQYPVEI---PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV--RKITA- 131
            + G  + +  P ++   PG +              A N     I  F       KI   
Sbjct: 388 ETFGKHIGY-LPQDVELFPGTV--------------AEN-----IARFGENADPEKIIEA 427

Query: 132 -------ELGINM----DMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGL 178
                  EL + +    D +  P     SGG+++   I   R L  +P L +LDE +S L
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ--RIALARALYGDPKLVVLDEPNSNL 485

Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           D +  +  A  + AL+++  + ++ITH   LL  +  D I VL +G+I
Sbjct: 486 DEEGEQALANAIKALKARGITVVVITHRPSLLGCV--DKILVLQDGRI 531


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILD 71
           D   ++G+++++E   VVA +GP+G GKST   L +   D        G+I   G +I D
Sbjct: 15  DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74

Query: 72  WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
             + V+   K + + FQ P   P  I   F  +A   +     +       F R+  + T
Sbjct: 75  KGVQVDELRKNVGMVFQRPNPFPKSI---FENVAYGLRVNGVKDNA-----FIRQRVEET 126

Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
            +     D +K  L       SGG+++   I +   + PS+ ++DE  S LD  +     
Sbjct: 127 LKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVE 186

Query: 188 QGVNALRSQDRSFLIITH 205
           + ++ L+ +D + +I+TH
Sbjct: 187 ELIHELK-KDYTIVIVTH 203


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 33/219 (15%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSY---LLSGHKDYEI 57
            +E+KNL  K       ++ G++L+V+P EVVAI+GP+GSGK+TL     LL   +   I
Sbjct: 3   AIEVKNLVKKF--HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE--- 114
             GDI       +D +      KG+    +  V   G +   F    L   R        
Sbjct: 61  RVGDI------TIDTARSLSQQKGLIRQLRQHV---GFVFQNF---NLFPHRTVLENIIE 108

Query: 115 -----KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEP 166
                K     + T + R++ A++G+       P  L  SGG+++   IA  L MR   P
Sbjct: 109 GPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRL--SGGQQQRVAIARALAMR---P 163

Query: 167 SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205
            + + DE  S LD + +      +  L  + R+ +I+TH
Sbjct: 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 34/219 (15%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT--- 58
           +EI+NL   +   + E ++ +NL +  ++V A++GP+G GKSTL  L S ++  ++    
Sbjct: 2   IEIENL--NLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTL--LRSLNRMNDLVPGV 57

Query: 59  --AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
              G +L+ G+ I D  I V    + + + FQ P   P   M  +  IA   +     +K
Sbjct: 58  RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP---MSIYDNIAYGPRLHGIKDK 114

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLC 169
           +    +    V +   +  +  D +K  L+   LG SGG+++   IA  L +   EP + 
Sbjct: 115 K----ELDEIVEESLKKAAL-WDEVKDRLHDSALGLSGGQQQRLCIARALAV---EPEVL 166

Query: 170 ILDETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITH 205
           +LDE  S LD     IA   +  L     +  + +I+TH
Sbjct: 167 LLDEPTSALD----PIATGKIEELIQELKKKYTIVIVTH 201


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 27/241 (11%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEI 57
           +LE+K+L   I   +   +  +++ +E   V A++GP+G GKST    ++   D      
Sbjct: 21  ILEVKDL--SIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78

Query: 58  TAGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGII---MMQFLKIALNEQRKARN 113
           + G+ILY+G +ILD +I V    + I + FQ P   P  I   +   LK A  E+RK+  
Sbjct: 79  SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA-GERRKS-- 135

Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCI 170
               ++ +   +     A      D L     L  SGG+++   IA  L M+   P++ +
Sbjct: 136 ----VLDEIVEESLTKAALWDEVKDRLHSSA-LSLSGGQQQRLCIARTLAMK---PAVLL 187

Query: 171 LDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKT 229
           LDE  S LD I   KI    +  L+ ++ S +I+TH  +    +   T   L NG +++ 
Sbjct: 188 LDEPASALDPISNAKIEEL-ITELK-EEYSIIIVTHNMQQALRVSDRTAFFL-NGDLVEY 244

Query: 230 G 230
            
Sbjct: 245 D 245


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)

Query: 23  NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82
           +L V   E+VAIMGP+G+GKSTL  L++G    E  +G I    +S    +  +R    +
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFI--EPASGSIKVNDQSHTGLAPYQRP---V 72

Query: 83  FLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR 142
            + FQ       + + Q + + L+   K   E++        KV     ++GI   + + 
Sbjct: 73  SMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQ-------EKVVDAAQQVGIADYLDRL 125

Query: 143 PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD----IDALKIAAQGVNALRSQDR 198
           P  L  SGG+++   + +  +    + +LDE  S LD     + L +  Q       + R
Sbjct: 126 PEQL--SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ---LCSERQR 180

Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           + L++TH+      I    I V+  GKI    D
Sbjct: 181 TLLMVTHHLSDARAIA-SQIAVVSQGKIKVVSD 212


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
          Reviewed.
          Length = 240

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          M+E KN+        T+++  ++L ++  EVV I+GP+GSGKSTL  L   +K  EIT+G
Sbjct: 1  MIEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTL--LRCINKLEEITSG 56

Query: 61 DILYKGESILDWSIVER 77
          D++  G  + D  + ER
Sbjct: 57 DLIVDGLKVNDPKVDER 73


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 51/249 (20%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            L+I     ++ DT T  +   +L +   +  A +G NGSGKS L+  L+G    E+   
Sbjct: 3   SLQISQGTFRLSDTKTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAG----EL--- 53

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
             L  GE    +S + R      L+F+           Q  K+        RN  ++L P
Sbjct: 54  -PLLSGERQSQFSHITR------LSFE-----------QLQKLV--SDEWQRNNTDMLSP 93

Query: 121 ---DFTRKVRKI--------------TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRL 163
              D  R   +I                + GI   +L R      S GE +   + Q  +
Sbjct: 94  GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGI-TALLDRRFKY-LSTGETRKTLLCQALM 151

Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF-LIITHYQRLLNYIKPDTIHVLH 222
            EP L ILDE   GLD+ + +  A+ + +L     +  L++  +  + +++      VL 
Sbjct: 152 SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFV--QFAGVLA 209

Query: 223 NGKIIKTGD 231
           +  + +TG+
Sbjct: 210 DCTLAETGE 218



 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY-----KGESI 69
           D  I+  L+ +V P E   I+GPNG+GKSTL  L++G      +    L+      GE+I
Sbjct: 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331

Query: 70  LDWSIVER---ASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEKELLIPDFTRK 125
             W I +     S  + L ++    +  +I+  F   I + +    R +K          
Sbjct: 332 --WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQK---------L 380

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
            ++    LGI+      P +   S G++++A I++  +  P+L ILDE   GLD
Sbjct: 381 AQQWLDILGIDKRTADAPFH-SLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 29/245 (11%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA- 59
           ++EI+N  A     + + ++ + +K+  +++ AI+GP+G GK+TL   ++   D  I   
Sbjct: 3   IIEIENFSAYY--GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND-HIPGF 59

Query: 60  ---GDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
              G I +KG+ I D  + V    K + + FQ P   P   M  +  +A   +      K
Sbjct: 60  RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP---MSIYDNVAFGPRIHGVKSK 116

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILD 172
             L     R V +   +  +  D +K  LN      SGG+++   I +   +EP + +LD
Sbjct: 117 HKL----DRIVEESLKKAAL-WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171

Query: 173 ETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIK 228
           E  S LD     IA Q +  L    S++ + +I+TH   +   I+  D I  ++ G++I+
Sbjct: 172 EPTSALD----PIATQRIEKLLEELSENYTIVIVTH--NIGQAIRIADYIAFMYRGELIE 225

Query: 229 TGDYS 233
            G   
Sbjct: 226 YGPTR 230


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 42/244 (17%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---IT 58
           + ++++  +  D  T  ++ ++  V   E VAI+G NGSGKSTL+ LL+G    E   IT
Sbjct: 6   IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65

Query: 59  AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQF--------LKIALNEQRK 110
            G ++   E++  W +  +    + + FQ P         QF        +   L     
Sbjct: 66  VGGMVLSEETV--WDVRRQ----VGMVFQNPDN-------QFVGATVQDDVAFGLENIGV 112

Query: 111 ARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPS 167
            R E          +V +   ++G+   + + P  L  SGG+K+   IA +L ++   P 
Sbjct: 113 PREE-------MVERVDQALRQVGMEDFLNREPHRL--SGGQKQRVAIAGVLALQ---PD 160

Query: 168 LCILDETDSGLDIDALKIAAQGVNALRSQDR-SFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           + ILDE  S LD    +   + V  L+ Q   + L ITH   L    + D + V++ G+I
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH--DLDEAAQADRVIVMNKGEI 218

Query: 227 IKTG 230
           ++ G
Sbjct: 219 LEEG 222


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 10/194 (5%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---ITAGDILYKGESILDW 72
           ++ I G+++ +  ++V AI+GP+G GKST    L+   + E      G + + G++I D 
Sbjct: 20  SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79

Query: 73  SI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
            I + R  + I + FQ P   P   M  +  +A   +  A+  +   + +      K  A
Sbjct: 80  RININRLRRQIGMVFQRPNPFP---MSIYENVAYGVRISAKLPQ-ADLDEIVESALKGAA 135

Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
                 D L +   LG SGG+++   I +   ++P + ++DE  S LD  A     + ++
Sbjct: 136 LWQEVKDKLNKSA-LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH 194

Query: 192 ALRSQDRSFLIITH 205
           +LRS+  +  I+TH
Sbjct: 195 SLRSE-LTIAIVTH 207


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
          Provisional.
          Length = 204

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          MLE +NL A   D +  +  GL+  +   E+V I GPNG+GK++L  +L+G    +  AG
Sbjct: 1  MLEARNL-ACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AG 56

Query: 61 DILYKGESI 69
          ++L++GE I
Sbjct: 57 EVLWQGEPI 65


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 55/224 (24%), Positives = 111/224 (49%), Gaps = 19/224 (8%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEITAGDILYKGESIL 70
           D  I++ + +K+  + +  IMGP+GSGKST    L+ L+  +       G +LY G+ I 
Sbjct: 22  DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81

Query: 71  DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKELLIPDFTRKVRKI 129
               + +  K + + FQ P   P + +   +   L     K + E + ++ +  RKV  +
Sbjct: 82  QIDAI-KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV-GL 139

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
             E+    D L  P +   SGG+++   I +   L+P + ++DE  S +DI    + +Q 
Sbjct: 140 WKEV---YDRLNSPAS-QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI----VNSQA 191

Query: 190 VNALRSQ---DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +  L ++   + + +I++H  + +  +  D +  L+NG++++ G
Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVA-DYVAFLYNGELVEWG 234


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 4   IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL 63
           +KN+  K    D  I+  LNL +E  ++ AI+G +GSGKSTL  ++   + ++  +G + 
Sbjct: 1   LKNISKKF--GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVY 56

Query: 64  YKGESILDWSIVE----RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI 119
             G+     +  +    R  K  +L FQ    I    + + L + L  ++ ++ EK    
Sbjct: 57  LNGKETPPLNSKKASKFRREKLGYL-FQNFALIENETVEENLDLGLKYKKLSKKEKR--- 112

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
                K ++   ++G+N+ + ++   L  SGGE++   + +  L +P L + DE    LD
Sbjct: 113 ----EKKKEALEKVGLNLKLKQKIYEL--SGGEQQRVALARAILKDPPLILADEPTGSLD 166

Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205
                     +  L  + ++ +I+TH
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTH 192


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
          protein.  Phosphonates are a class of
          phosphorus-containing organic compound with a stable
          direct C-P bond rather than a C-O-P linkage. A number
          of bacterial species have operons, typically about 14
          genes in size, with genes for ATP-dependent transport
          of phosphonates, degradation, and regulation of the
          expression of the system. Members of this protein
          family are the ATP-binding cassette component of
          tripartite ABC transporters of phosphonates.
          Length = 243

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          MLE++NL +K+     + ++ +NL + P E VAI+GP+G+GKSTL  L   ++  E ++G
Sbjct: 1  MLEVENL-SKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTL--LRCINRLVEPSSG 57

Query: 61 DILYKGESI 69
           IL +G  I
Sbjct: 58 SILLEGTDI 66


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 36/227 (15%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D + + G+N KV   EV   +GPNG+GK+T   +L+                        
Sbjct: 5   DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT----------------------- 41

Query: 75  VERASKGIFLAFQY-----PVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRKVR 127
           + R + G      Y     P ++   I +     +++E    R   E++  +    +   
Sbjct: 42  LLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEA 101

Query: 128 KITAELGINM----DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183
           +  AE  + +    +   RP+   +SGG ++  +I    + +P +  LDE  +GLD    
Sbjct: 102 EERAEELLELFELGEAADRPVG-TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160

Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +     + AL+ +  + L+ THY    + +  D I ++ +G+II  G
Sbjct: 161 RAIWDYIRALKEEGVTILLTTHYMEEADKLC-DRIAIIDHGRIIAEG 206


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 29/225 (12%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWS 73
           E+++G++  +   EV A++G NG+GKSTL  +++G     I     G +   G      +
Sbjct: 25  EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG-----IVPPDSGTLEIGGNPCARLT 79

Query: 74  IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL 133
             +    GI+L  Q P+  P + + +   I     ++  +          +K++++ A L
Sbjct: 80  PAKAHQLGIYLVPQEPLLFPNLSVKE--NILFGLPKRQASM---------QKMKQLLAAL 128

Query: 134 G--INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
           G  +++D     L +     +++I EIL+  + +  + ILDE  + L     +     + 
Sbjct: 129 GCQLDLDSSAGSLEV----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184

Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII---KTGDYS 233
            L +Q    + I+H    +  +  D I V+ +G I    KT D S
Sbjct: 185 ELLAQGVGIVFISHKLPEIRQLA-DRISVMRDGTIALSGKTADLS 228



 Score = 30.8 bits (70), Expect = 0.37
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 36/197 (18%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
           E  R ++L+V   E++ + G  G+G++ L+  L G +      G I+  G+ I   S  +
Sbjct: 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALSTAQ 334

Query: 77  RASKGIFLAFQYPVEIP------GIIMMQFLKIAL--NEQRKARNEKELLI-PDFTRKV- 126
           R ++G+       V +P      G+    +L   L  N      N +   I P     V 
Sbjct: 335 RLARGL-------VYLPEDRQSSGL----YLDAPLAWNVCALTHNRRGFWIKPARENAVL 383

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLE--PSLCILDETDSGLDIDAL- 183
            +    L I  +  ++      SGG ++  ++L  + LE  P L I+DE   G+D+ A  
Sbjct: 384 ERYRRALNIKFNHAEQAAR-TLSGGNQQ--KVLIAKCLEASPQLLIVDEPTRGVDVSARN 440

Query: 184 -------KIAAQGVNAL 193
                   IAAQ V  L
Sbjct: 441 DIYQLIRSIAAQNVAVL 457


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 15/162 (9%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI-VERASK 80
           +N+++E  E V ++G  GSGKSTL   L+G    + T+G I+  G  I D  + +    K
Sbjct: 26  VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--LKPTSGKIIIDGVDITDKKVKLSDIRK 83

Query: 81  GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDML 140
            + L FQYP E           IA        +E+E+       +V++    +G++ +  
Sbjct: 84  KVGLVFQYP-EYQLFEETIEKDIAFGPINLGLSEEEI-----ENRVKRAMNIVGLDYEDY 137

Query: 141 KRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD 179
           K       SGG+K+   IA ++ M   EP + ILDE  +GLD
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAM---EPKILILDEPTAGLD 176


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 33/188 (17%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  I + +NL +   E V  +GP+G GKSTL  +++G +D  IT+GD+    + + D   
Sbjct: 15  DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMND--- 69

Query: 75  VERASKGIFLAFQYPVEIPGIIM---MQF-LKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           V  A +G+ + FQ     P + +   M F LK+A       + E         ++V ++ 
Sbjct: 70  VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA----GAKKEEIN-------QRVNQVA 118

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
             L +   + ++P  L  SGG+++   I +  + EPS+ +LDE  S LD           
Sbjct: 119 EVLQLAHLLDRKPKAL--SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA---------- 166

Query: 191 NALRSQDR 198
            ALR Q R
Sbjct: 167 -ALRVQMR 173


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           ++  L+L++E  E++A++G +G GK+TL   ++G        G I        D +    
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR---DLTHAPP 76

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
             +G+ L FQ     P + +   +   L  Q+  +        D   +V      +G+  
Sbjct: 77  HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-------ADIAERVADALKLVGLGD 129

Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL--RS 195
                P  L  SGG ++   I +   +EP + +LDE  S LD +      + + AL    
Sbjct: 130 AAAHLPAQL--SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187

Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYA 244
            + + L +TH  +       D   ++ +G++   G+     D   +G+A
Sbjct: 188 PELTILCVTH-DQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFA 235


>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 40/206 (19%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           ++  ++L V   E+V ++GPNG+GK+T  Y++ G    +  AG+I+   E I    +  R
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHAR 75

Query: 78  ASKGIFLAFQYPVEIPGII--------MMQFLKIALN---EQRKARNEKELLIPDFTRKV 126
           A +GI     Y  +   I         +M  L+I  +   EQR+ R  +  L+ +F    
Sbjct: 76  ARRGI----GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE--LMEEF---- 125

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD----IDA 182
                    +++ L+  +    SGGE++  EI +     P   +LDE  +G+D    ID 
Sbjct: 126 ---------HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176

Query: 183 LKIAAQGVNALRSQDRSFLIITHYQR 208
            +I    +  LR      LI  H  R
Sbjct: 177 KRI----IEHLRDSGLGVLITDHNVR 198


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 24/204 (11%)

Query: 33  AIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPV-E 91
           +I+G NGSGKST++ L+ G +     +G+I Y  ++I D +  +   K I + FQ P  +
Sbjct: 39  SIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEK-LRKHIGIVFQNPDNQ 95

Query: 92  IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR----PLNLG 147
             G I+   +   L             +P    ++ +  +E    +DML+R    P  L 
Sbjct: 96  FVGSIVKYDVAFGLENH---------AVP--YDEMHRRVSEALKQVDMLERADYEPNAL- 143

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLI-ITHY 206
            SGG+K+   I  +  L PS+ ILDE  S LD DA +     V  ++S+    +I ITH 
Sbjct: 144 -SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201

Query: 207 QRLLNYIKPDTIHVLHNGKIIKTG 230
             L   ++ D + V++ G + K G
Sbjct: 202 -DLSEAMEADHVIVMNKGTVYKEG 224


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L + N+     D    +++GL+L+++  E VA++G  G GKSTL  LL+  + ++   G+
Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGE 396

Query: 62  ILYKGESILDWS 73
           IL  G+ I D+S
Sbjct: 397 ILLNGQPIADYS 408



 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 20/112 (17%)

Query: 142 RPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL---RS 195
           R L    SGGE++   IA  L   L +  L +LDE   GLD        + +  L    +
Sbjct: 474 RQL----SGGEQRRLGIARAL---LHDAPLLLLDEPTEGLD----AETERQILELLAEHA 522

Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
           Q+++ L+ITH  RL    + D I V+ NG+II+ G +   L  ++  Y +L 
Sbjct: 523 QNKTVLMITH--RLTGLEQFDRICVMDNGQIIEQGTHQ-ELLAQQGRYYQLK 571


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M EI+           EI++ +++K E   +  I+GP+G+GKSTL  L++  +  + T G
Sbjct: 1   MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEG 58

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            IL  G  I    +++   K I + FQ P    G +     K  +      + EK + + 
Sbjct: 59  SILIDGVDIKTIDVIDLRRK-IGMVFQQPHLFEGTV-----KDNIEYGPMLKGEKNVDVE 112

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
            +   V       G+N +   R +    SGGE +   I +     P + +LDE  S LD 
Sbjct: 113 YYLSIV-------GLNKEYATRDVK-NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164

Query: 181 DALKIAAQGVNALRSQ-DRSFLIITH 205
            + +I  + +  L+++ + + + ITH
Sbjct: 165 TSTEIIEELIVKLKNKMNLTVIWITH 190


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 26/249 (10%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E+++L  +  D  T+ ++GL+L +      A++GPNG+GKSTL  LL  +  Y    G 
Sbjct: 5   IEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTL--LLHLNGIYLPQRGR 61

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           +   G  +   +     SK + L FQ P +        +  +A        ++ E+    
Sbjct: 62  VKVMGREVNAENEKWVRSK-VGLVFQDP-DDQVFSSTVWDDVAFGPVNMGLDKDEVE--- 116

Query: 122 FTRKVRKITAELGINMDML--KRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDS 176
             R+V    A   + M     K P +L +  G+KK   IA +L M   +P + +LDE  +
Sbjct: 117 --RRVE--EALKAVRMWDFRDKPPYHLSY--GQKKRVAIAGVLAM---DPDVIVLDEPMA 167

Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
            LD    +   + ++ L +Q ++ ++ TH   L      D + VL  G+++  GD S+  
Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA-DQVIVLKEGRVLAEGDKSLLT 226

Query: 237 D---LEENG 242
           D   +E+ G
Sbjct: 227 DEDIVEQAG 235


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 55/259 (21%)

Query: 1   MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS--TLSYL-LSGHKDY 55
           +L I+NL        T   ++  ++L++E  E +A++G +GSGKS   LS L L      
Sbjct: 5   LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPV 64

Query: 56  EITAGDILYKGESILDWSIVERASKG-----IFLAFQYPVEIPGIIMMQFLKIALNEQRK 110
              +GDI + GES+L  S  E+  +G     I + FQ P+            ++LN    
Sbjct: 65  VYPSGDIRFHGESLLHAS--EQTLRGVRGNKIAMIFQEPM------------VSLNPLHT 110

Query: 111 ARNEKELL-IPDFTRKVRKITAELGINMDMLKR-------------PLNLGFSGGEKKIA 156
              EK+L  +    R +R+  A   I ++ L R             P  L  SGGE++  
Sbjct: 111 L--EKQLYEVLSLHRGMRREAARGEI-LNCLDRVGIRQAAKRLTDYPHQL--SGGERQRV 165

Query: 157 EILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNY 212
            I    L  P L I DE  + LD+    + AQ +  LR   +      L ITH    L+ 
Sbjct: 166 MIAMALLTRPELLIADEPTTALDV---SVQAQILQLLRELQQELNMGLLFITHN---LSI 219

Query: 213 IK--PDTIHVLHNGKIIKT 229
           ++   D + V+ NG+ ++ 
Sbjct: 220 VRKLADRVAVMQNGRCVEQ 238



 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 61/256 (23%), Positives = 123/256 (48%), Gaps = 46/256 (17%)

Query: 1   MLEIKNLR----------AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LS 46
           +L+++ L+           + VD +  +++ ++  + P E + ++G +GSGKST    L 
Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNV-VVKNISFTLRPGETLGLVGESGSGKSTTGLALL 333

Query: 47  YLLSGHKDYEITAGDILYKGESILDWSIVERA----SKGIFLAFQYPVEI--PGIIMMQF 100
            L++       + G+I + G+ + + +   R        I + FQ P     P + ++Q 
Sbjct: 334 RLIN-------SQGEIWFDGQPLHNLN--RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384

Query: 101 LKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEIL 159
           ++  L   +   +  +       ++V  +  E+G++ +   R P    FSGG+++   I 
Sbjct: 385 IEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDPETRHRYPAE--FSGGQRQRIAIA 437

Query: 160 QMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS-QDR---SFLIITHYQRLLNYIKP 215
           +  +L+PSL ILDE  S LD     + AQ +  L+S Q +   ++L I+H   ++  +  
Sbjct: 438 RALILKPSLIILDEPTSSLD---KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH 494

Query: 216 DTIHVLHNGKIIKTGD 231
             I VL  G++++ GD
Sbjct: 495 QVI-VLRQGEVVEQGD 509


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 13/221 (5%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD----YEITAGDILYKGESIL 70
           + E + G++L  E  E+ A++GP+G GKST    L+   D     +IT G+I ++G++I 
Sbjct: 16  NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT-GEIKFEGQNIY 74

Query: 71  DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
              + +    K + + FQ P   P  +   +  +A   +     +KE LI     +  K 
Sbjct: 75  GSKMDLVELRKEVGMVFQQPTPFPFSV---YDNVAYGLKIAGVKDKE-LIDQRVEESLKQ 130

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
            A      D L R     FSGG+++   I +   + P + +LDE  S LD  +     + 
Sbjct: 131 AAIWKETKDNLDRNAQ-AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +  L+    +F+++TH  +    I  D    L NG +I+ G
Sbjct: 190 LMELK-HQYTFIMVTHNLQQAGRIS-DQTAFLMNGDLIEAG 228


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
          subunit; Provisional.
          Length = 356

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 10/93 (10%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           L+++ +R K  D  T++I+G++L V   E + ++GP+G GKSTL  +++G +   IT+G
Sbjct: 3  GLKLQAVR-KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSG 59

Query: 61 DILYKGESILDWSIVERASKGIFLAFQ----YP 89
          +I   G  + +   +E A + I + FQ    YP
Sbjct: 60 EIWIGGRVVNE---LEPADRDIAMVFQNYALYP 89


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
          Provisional.
          Length = 207

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          MLE ++L    V     +  GL+  +   E + + GPNGSGK+TL  L++G       AG
Sbjct: 2  MLEGEDLAC--VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--LPPAAG 57

Query: 61 DILYKGESILDWSIVERA 78
           I   G  I D  + E  
Sbjct: 58 TIKLDGGDIDDPDVAEAC 75


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 53/241 (21%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
            TD   +  +N  ++P +++ I GP GSGKSTL  L+  H  ++++ GDI +    +   
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKL 382

Query: 73  SIVERASKGIFLAF--QYPVEIPGIIMMQFL-------KIALNEQRKARNEKELLIPDFT 123
            +    S+   LA   Q P          FL        IAL              PD T
Sbjct: 383 QLDSWRSR---LAVVSQTP----------FLFSDTVANNIALGR------------PDAT 417

Query: 124 RKVRKITAELG-INMDMLKRP----LNLG-----FSGGEKKIAEILQMRLLEPSLCILDE 173
           ++  +  A L  ++ D+L+ P      +G      SGG+K+   I +  LL   + ILD+
Sbjct: 418 QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477

Query: 174 TDSGLDIDALKIAAQGVNALRS--QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
             S +D    +   Q ++ LR   + R+ +I  H  RL    +   I V+ +G I + G+
Sbjct: 478 ALSAVD---GRTEHQILHNLRQWGEGRTVIISAH--RLSALTEASEILVMQHGHIAQRGN 532

Query: 232 Y 232
           +
Sbjct: 533 H 533


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 23/227 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILD 71
           D + +  ++L+ E ++V A++GP+G GKST    L+   D        G+IL  GE+I D
Sbjct: 18  DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77

Query: 72  WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
             + V    + + + FQ P   P  I   F  +A   +     +K  L     R +R   
Sbjct: 78  PHVDVVELRRRVGMVFQKPNPFPKSI---FENVAYGLRVNGVKDKAYLAERVERSLRH-- 132

Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
           A L    D +K  L+   LG SGG+++   I +   +EP + ++DE  S LD     IA 
Sbjct: 133 AAL---WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD----PIAT 185

Query: 188 QGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           Q +  L        + +I+TH  +    +  D     + GK+I+ G 
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVS-DVTAFFYMGKLIEVGP 231


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 19/210 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +L+++ L     D  T  ++G+N+ ++  EV AI+G NG+GKSTL   L+G    + ++G
Sbjct: 5   ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSG 61

Query: 61  DILYKGESILDWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
            IL+ G+ I D+S   + +  + + + FQ P         Q    ++  Q  +     L 
Sbjct: 62  RILFDGKPI-DYSRKGLMKLRESVGMVFQDPDN-------QLFSASV-YQDVSFGAVNLK 112

Query: 119 IP--DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
           +P  +  ++V       GI  + LK       S G+KK   I  + ++EP + +LDE  +
Sbjct: 113 LPEDEVRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170

Query: 177 GLD-IDALKIAAQGVNALRSQDRSFLIITH 205
           GLD +   +I    V   +    + +I TH
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATH 200


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 25/219 (11%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI---VER 77
            +NL +E     A +G  GSGKST+  LL+G   +  T G +      I   S    +++
Sbjct: 25  DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--HVPTQGSVRVDDTLITSTSKNKDIKQ 82

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
             K + L FQ+P     +     LK +A   Q    +++E          R+  A +GI+
Sbjct: 83  IRKKVGLVFQFPES--QLFEETVLKDVAFGPQNFGVSQEEA-----EALAREKLALVGIS 135

Query: 137 MDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
             + ++ P  L  SGG+ +   IA IL M   EP + +LDE  +GLD    K        
Sbjct: 136 ESLFEKNPFEL--SGGQMRRVAIAGILAM---EPKILVLDEPTAGLDPKGRKELMTLFKK 190

Query: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
           L     + +++TH    + NY   D ++VL  GK++ +G
Sbjct: 191 LHQSGMTIVLVTHLMDDVANY--ADFVYVLEKGKLVLSG 227


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESI 69
           + E ++ +N  +    V AI+GP+G GKST  +L + ++  ++     T G +++ GE I
Sbjct: 51  EFEAVKKVNADILSKYVTAIIGPSGCGKST--FLRAINRMNDLIPSCHTTGALMFDGEDI 108

Query: 70  LDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
                 E    K I + FQ P   P  I   F  IA   +    N+K+ L     + +RK
Sbjct: 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSI---FDNIAYGPRLHGINDKKQLEEIVEKSLRK 165

Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
                 ++ D L +   LG SGG+++   + +   +EP + +LDE  S LD  A      
Sbjct: 166 AALWDEVS-DRLDKNA-LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED 223

Query: 189 GVNALRSQDRSFLIITH 205
            +  LR    + +I+TH
Sbjct: 224 LIQELRGS-YTIMIVTH 239


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 62/256 (24%), Positives = 115/256 (44%), Gaps = 41/256 (16%)

Query: 1   MLEIKNLRA--KIVDTDT---------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49
           +LE+ +L+    I D            + + G+ L++   E + ++G +G GKST +  +
Sbjct: 8   LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 67

Query: 50  SGHKDYEITAGDILYKGESILDWSIVER--ASKGIFLAFQYPVE------IPGIIMMQFL 101
            G    + T G++ + G+ +L     E       I + FQ P+         G I+ + L
Sbjct: 68  IGL--VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125

Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQ 160
           +    +  +          +   +V+ +  ++G+  +++ R P    FSGG+ +   I +
Sbjct: 126 RTYHPKLSRQ---------EVKDRVKAMMLKVGLLPNLINRYPHE--FSGGQCQRIGIAR 174

Query: 161 MRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPD 216
             +LEP L I DE  S LD+    I AQ VN L+   R    S + I H   ++ +I  D
Sbjct: 175 ALILEPKLIICDEPVSALDV---SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS-D 230

Query: 217 TIHVLHNGKIIKTGDY 232
            + V++ G  ++ G Y
Sbjct: 231 RVLVMYLGHAVELGTY 246


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           +E++N+       +  +I   +L ++P + VA++G +GSGKST++ L++G   Y+  +G+
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--YQPWSGE 535

Query: 62  ILYKGE 67
           IL+ G 
Sbjct: 536 ILFDGI 541



 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
            SGG+++  EI +  +  PS+ ILDE  S LD +  KI       LR +  + +I+ H  
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN---LRRRGCTCIIVAH-- 670

Query: 208 RLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
           RL      D I VL  GK+++ G +   L      YA LI+
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHE-ELWAVGGAYARLIR 710


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 33/228 (14%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE--ITAGDILYKGESILDWSIV 75
           +++ LNL ++  EV+A++G +GSGKS     + G        T+G+IL  G  +L  SI 
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN---EKELLIPDFTRKVRKITAE 132
            R                   +MQ  + A N      N   E    +   +++ R +  E
Sbjct: 61  GRHIA---------------TIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILE 105

Query: 133 --LGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
               + +   +  L       SGG  +   I    LLEP   I DE  + LD+      A
Sbjct: 106 ALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV---NQA 162

Query: 188 QGVNALRS----QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           + +  LR          L+ITH   ++  I  D + V+ +G+I++ G 
Sbjct: 163 RVLKLLRELRQLFGTGILLITHDLGVVARIA-DEVAVMDDGRIVERGT 209


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 25/228 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EITAGDILYKGESIL 70
           D + ++ +NL +E ++V A++GP+G GKST    L+   D     +I  G++L  G+ I 
Sbjct: 15  DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE-GEVLLDGQDIY 73

Query: 71  DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRKVR 127
              I V +  K + + FQ P   P   M  +  +A   +     +K+ L  I + + K  
Sbjct: 74  KSDIDVNQLRKRVGMVFQQPNPFP---MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA 130

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD-IDAL 183
            +  E+    D LK+   LG SGG+++   IA  L +   EP + ++DE  S LD I  L
Sbjct: 131 ALWDEV---KDRLKKSA-LGLSGGQQQRLCIARALAV---EPEVLLMDEPTSALDPISTL 183

Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           KI  + +  L+ +D + +I+TH  +  + I   T   L NG+I++ GD
Sbjct: 184 KI-EELIQELK-KDYTIVIVTHNMQQASRISDKTAFFL-NGEIVEFGD 228


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 30/227 (13%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  +++GLNL    S V  ++G NG GKSTL   LSG        G +L++G+  LD+S 
Sbjct: 13  DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--LRPQKGAVLWQGKP-LDYS- 68

Query: 75  VERA----SKGIFLAFQYP------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR 124
            +R      + +   FQ P       +I   I      + + E    R   E L     +
Sbjct: 69  -KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ 127

Query: 125 KVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK 184
             R              +P+    S G+KK   I    +L+    +LDE  +GLD     
Sbjct: 128 HFR-------------HQPIQC-LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173

Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
                +  + +Q    +I +H   L+ Y   D ++VL  G+I+  G 
Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLI-YEISDAVYVLRQGQILTHGA 219


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 23/224 (10%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           ++ +NL V P E+ A++G NG+GKSTL  +LSG   +E T G I     +         A
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--HEPTKGTITINNINYNKLDHKLAA 78

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL----G 134
             GI + +Q    I  + +++ L I  +  +K      + I D+ R++R   A +    G
Sbjct: 79  QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCG---VNIIDW-REMRVRAAMMLLRVG 134

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL---DIDALKIAAQGVN 191
           + +D+ ++  NL  S   K++ EI +  +L+  + I+DE  S L   ++D L +    +N
Sbjct: 135 LKVDLDEKVANLSIS--HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI---MN 189

Query: 192 ALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGDYS 233
            LR +  + + I+H    L  I+   D   V+ +G  + +G  S
Sbjct: 190 QLRKEGTAIVYISHK---LAEIRRICDRYTVMKDGSSVCSGMVS 230


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 30/223 (13%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE-- 76
           +   +L +   E+  IMG +GSGKST   +L+  +  E TAG I   GE+I+  S VE  
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN--RLIEPTAGQIFIDGENIMKQSPVELR 66

Query: 77  -RASKGIFLAFQYPVEIPGIIMMQFLKIALN------EQRKARNEKELLIPDFTRKVRKI 129
               K I + FQ     P + ++Q   +         ++RK +  + L +        + 
Sbjct: 67  EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188
             EL               SGG ++   + +    EP + ++DE  S LD +    +  +
Sbjct: 127 PDEL---------------SGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171

Query: 189 GVNALRSQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
                 +  ++ + ITH   L   I+  D I ++  G+I++ G
Sbjct: 172 LKKLQATLQKTIVFITH--DLDEAIRIGDRIVIMKAGEIVQVG 212


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 30/224 (13%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
             + +  +NL+V    +VA++GP+GSGKSTL  +++G +  +  +G I   G+       
Sbjct: 12  SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE--QPDSGRIRLNGQDATRVHA 69

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
            +R    I   FQ+      + +   +   L  ++  + + +        +V ++   + 
Sbjct: 70  RDR---KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-------ARVEELLELVQ 119

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
           +     + P  L  SGG+++   + +   +EP + +LDE    LD       A+    LR
Sbjct: 120 LEGLGDRYPNQL--SGGQRQRVALARALAVEPQVLLLDEPFGALD-------AKVRKELR 170

Query: 195 SQDRSF--------LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           S  R          + +TH Q     +  D I V+ NGKI + G
Sbjct: 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVA-DRIVVMSNGKIEQIG 213


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 38/228 (16%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  ++ GL+  V   E   ++GPNG+GKST++ ++ G    +  AG I   G  +   + 
Sbjct: 53  DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARAR 110

Query: 75  VERASKGIFLAF-----QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP---DFTRKV 126
           + RA  G+   F     ++ V    ++  ++  +        R E E +IP   +F R  
Sbjct: 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM------STR-EIEAVIPSLLEFARLE 163

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
            K  A +               SGG K+   + +  + +P L ILDE  +GLD  A  + 
Sbjct: 164 SKADARVS------------DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211

Query: 187 AQGVNALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKIIKTG 230
            + + +L ++ ++ L+ TH+    +RL      D + VL  G+ I  G
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERLC-----DRLCVLEAGRKIAEG 254


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 15/230 (6%)

Query: 1   MLEIKNLRAKI-VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59
           +LE++NL  K   ++D   + G++  +   E V+I+G NGSGKST + L+ G   +E   
Sbjct: 4   ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--FEEFE 61

Query: 60  GDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI 119
           G +   GE +   ++     K I + FQ P         QF+  A  E   A   +   I
Sbjct: 62  GKVKIDGELLTAENVWNLRRK-IGMVFQNPDN-------QFVG-ATVEDDVAFGMENQGI 112

Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
           P      R   A L +NM   K       SGG+K+   +  +  L P + ILDE+ S LD
Sbjct: 113 PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172

Query: 180 IDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
               +   + ++ ++ +   + L ITH   L      D I V+  G+IIK
Sbjct: 173 PTGRQEIMRVIHEIKEKYQLTVLSITH--DLDEAASSDRILVMKAGEIIK 220


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 20/208 (9%)

Query: 31  VVAIMGPNGSGKSTLSYLLSGHKD----YEITAGDILYKGESILDWSIVERASKGIFLAF 86
           V ++MGP GSGK+T    L+   D    Y  + GD+L  G SI ++  V    + + + F
Sbjct: 49  VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS-GDVLLGGRSIFNYRDVLEFRRRVGMLF 107

Query: 87  QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLN- 145
           Q P   P  IM   L          R  K +   +F    +    E+G+  D +K  L+ 
Sbjct: 108 QRPNPFPMSIMDNVLA-------GVRAHKLVPRKEFRGVAQARLTEVGL-WDAVKDRLSD 159

Query: 146 --LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR-SFLI 202
                SGG++++  + +   + P + +LDE  S LD    +   + + +L   DR + +I
Sbjct: 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL--ADRLTVII 217

Query: 203 ITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           +TH       I  D   +  +G++++ G
Sbjct: 218 VTHNLAQAARIS-DRAALFFDGRLVEEG 244


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 37/260 (14%)

Query: 1   MLEIKNLRAKIVD-TDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKD 54
           +L +KNL     +  + E+  +  ++   E +++  I+G +GSGKSTL    +G    K 
Sbjct: 21  ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80

Query: 55  YEITAGDILYKGESILDWSIVERASKGI----------FLAFQYP------VEIPGIIMM 98
             I  GDI    +      I    SK I           + FQ+P        I   IM 
Sbjct: 81  GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIM- 139

Query: 99  QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEI 158
            F  +AL   +K+  +K           +    ++G++   L+R    G SGG+K+   I
Sbjct: 140 -FGPVALG-VKKSEAKK---------LAKFYLNKMGLDDSYLERS-PFGLSGGQKRRVAI 187

Query: 159 LQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTI 218
             +  ++P + I DE  +GLD        Q +   ++ +++  +ITH    +  +  D +
Sbjct: 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA-DEV 246

Query: 219 HVLHNGKIIKTGD-YSIALD 237
            V+  GKI+KTG  Y I  D
Sbjct: 247 IVMDKGKILKTGTPYEIFTD 266


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
            +  +    V AI G +GSGK+TL  L++G     +T      +GE +L+   +  + KG
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG-----LTR---PDEGEIVLNGRTLFDSRKG 67

Query: 82  IFL---------AFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
           IFL          FQ     P + +   L+  +   ++AR  +  +  +      ++   
Sbjct: 68  IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM---KRARPSERRISFE------RVIEL 118

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
           LGI   + + P  L  SGGEK+   I +  L  P L ++DE  + LD 
Sbjct: 119 LGIGHLLGRLPGRL--SGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
          component A2.  The enzyme that catalyzes the final step
          in methanogenesis, methyl coenzyme M reductase,
          contains alpha, beta, and gamma chains. In older
          literature, the complex of alpha, beta, and gamma
          chains was termed component C, while this single chain
          protein was termed methyl coenzyme M reductase system
          component A2.
          Length = 520

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
          +E+KNL  K      E+++ ++  +E  EV+ I+G +G+GKS L ++L G   YE T+G 
Sbjct: 1  IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58

Query: 62 ILY 64
          I+Y
Sbjct: 59 IIY 61



 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 57/262 (21%), Positives = 117/262 (44%), Gaps = 60/262 (22%)

Query: 1   MLEIKNLRAKIVDTDTEIIR---GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
           +++++N+  + +  D  +++    ++L+V+  E+  I+G +G+GK+TLS +++G    E 
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG--VLEP 336

Query: 58  TAGDILYK-GESILDWSIVE-----RASKGIFLAFQ----YP-------------VEIPG 94
           T+G++  + G+  +D +        RA + I +  Q    YP             +E+P 
Sbjct: 337 TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD 396

Query: 95  IIMMQ----FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSG 150
            +        LK+   ++ KA    +           K   EL               S 
Sbjct: 397 ELARMKAVITLKMVGFDEEKAEEILD-----------KYPDEL---------------SE 430

Query: 151 GEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRL 209
           GE+    + Q+ + EP + ILDE    +D I  + +    + A    +++F+I++H    
Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490

Query: 210 LNYIKPDTIHVLHNGKIIKTGD 231
           +  +  D   ++ +GKI+K GD
Sbjct: 491 VLDV-CDRAALMRDGKIVKIGD 511


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)

Query: 1   MLEIKNLRAKIVDTD----TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE 56
           M++ KN+  K    +       +  +NL+V+  E + I+G NGSGKST++  ++      
Sbjct: 4   MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61

Query: 57  ITAGDILYKGESILD----WSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKA 111
            + G +   G    D    W I  +A     + FQ P  +I   I+         E+  A
Sbjct: 62  PSEGKVYVDGLDTSDEENLWDIRNKAG----MVFQNPDNQIVATIV---------EEDVA 108

Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSL 168
              + L IP    + R   +   + M   +R      SGG+K+   IA IL MR   P  
Sbjct: 109 FGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR---PEC 165

Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDR-SFLIITHYQRLLNYIKPDTIHVLHNGKII 227
            I DE  + LD    +     +  L  +   + ++ITHY      ++ D I V+ +GK++
Sbjct: 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME--EAVEADRIIVMDSGKVV 223

Query: 228 KTG 230
             G
Sbjct: 224 MEG 226


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 23/236 (9%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG------HKDY 55
           +E K++     D+    +  ++  +      A++G NGSGKST+S L++G      + + 
Sbjct: 6   VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65

Query: 56  EITAGDILYKGESILDWSIVERASKGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNE 114
           +IT   I    +++  W I E+   GI   FQ P  +  G  +   +   L  +   R E
Sbjct: 66  KITVDGITLTAKTV--WDIREKV--GI--VFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119

Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
                    + VR + A++G+   +   P NL  SGG+K+   I  +  +EP + ILDE+
Sbjct: 120 -------MIKIVRDVLADVGMLDYIDSEPANL--SGGQKQRVAIAGILAVEPKIIILDES 170

Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            S LD    +   + +  L+ +  +  +I+    +      D + VL +GK++  G
Sbjct: 171 TSMLDPAGKEQILKLIRKLK-KKNNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT-----AGDILYKGESI 69
           D + ++ +NL V+   V A++GP+G GK+T  +L + ++ +++T      G IL  G+ I
Sbjct: 16  DKQAVKNVNLDVQRGTVNALIGPSGCGKTT--FLRAINRMHDLTPGARVTGRILLDGQDI 73

Query: 70  LDWSIVERA-SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
               +   A  + + + FQ P   P   M  F  +    +     +++ L+    R +R 
Sbjct: 74  YGPRVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRG 131

Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
             A      D LK P   G SGG+++   I +   +EP + ++DE  S LD
Sbjct: 132 -AALWDEVKDRLKTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIV 75
           I+  ++L++EP E VAI+GP+GSGKSTL  LL G +  E  +G + Y G+ +  LD   V
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAV 525

Query: 76  ER 77
            R
Sbjct: 526 RR 527



 Score = 33.4 bits (77), Expect = 0.061
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 147 GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHY 206
             SGG+++   I +  + +P + + DE  S LD     I ++ +  L+    + ++I H 
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV---TRIVIAH- 643

Query: 207 QRLLNYIKPDTIHVLHNGKIIKTGDY 232
            RL      D I+VL  G++++ G Y
Sbjct: 644 -RLSTIRNADRIYVLDAGRVVQQGTY 668


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 44/243 (18%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYEITA 59
           ++ +N+  +    D  ++ GL+  V+  E   ++GPNG+GK+T   +L G  H D    A
Sbjct: 8   IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD----A 61

Query: 60  GDILYKGESILDWSIVERASKGIFLAF-----QYPVEIPGIIMMQFLKIALNEQRKARNE 114
           G I   GE +   +   R   G+   F      + V    ++  ++  ++    R     
Sbjct: 62  GSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA---- 117

Query: 115 KELLIP---DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
              L+P   +F +   K  A++G              SGG K+   + +  + +P + +L
Sbjct: 118 ---LVPPLLEFAKLENKADAKVG------------ELSGGMKRRLTLARALVNDPDVLVL 162

Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKII 227
           DE  +GLD  A  +  + + +L ++ ++ L+ TH+    +RL +      + V+  G+ I
Sbjct: 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR-----LCVIEEGRKI 217

Query: 228 KTG 230
             G
Sbjct: 218 AEG 220


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EI 57
             I+NL   +   + + ++ +NL +   +V A++GP+G GKSTL   L+   D     +I
Sbjct: 4   FNIENL--DLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI 61

Query: 58  TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
           T G +   GE I     V      + + FQ P   P   M  +  +A   + +   +K++
Sbjct: 62  T-GKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP---MSIYENVAYGLRAQGIKDKKV 117

Query: 118 LIPDFTRKVRKITAELGINM-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
           L     R +R   A L   + D LK     G SGG+++   I +   +EP + ++DE  S
Sbjct: 118 LDEVVERSLR--GAALWDEVKDRLKSH-AFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174

Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITH 205
            LD  A     + +  L+ ++ + +I+TH
Sbjct: 175 ALDPIATHKIEELMEELK-KNYTIVIVTH 202


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 23/240 (9%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY--EIT 58
           +L++ +L   +     + +  ++L   P+E+ A++GP+GSGKSTL   ++   D   E+T
Sbjct: 5   ILQVSDL--SVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 59  -AGDILYKGESILD--WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
             G I+Y G +I       V+   K I + FQ P   P   M  +  +    + K   +K
Sbjct: 63  ITGSIVYNGHNIYSPRTDTVD-LRKEIGMVFQQPNPFP---MSIYENVVYGLRLKGIKDK 118

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILD 172
           ++L       V K      I  D +K  L+   LG SGG+++   I ++    P + +LD
Sbjct: 119 QVL----DEAVEKSLKGASI-WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD 173

Query: 173 ETDSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           E  S LD I A KI    +  L+  D + L++T   +  + I   T   L +G +I+  D
Sbjct: 174 EPTSALDPISAGKIEETLLG-LK-DDYTMLLVTRSMQQASRISDRTGFFL-DGDLIEYND 230


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY-EITA 59
           + EI+N     ++    ++  LNL ++ ++V A +GP+G GKST    L+   D  E T+
Sbjct: 80  VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139

Query: 60  --GDILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
             G+I + G +     I     +  I + FQ P       M  F  +A   +    N+++
Sbjct: 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE---MSIFDNVAYGPRNNGINDRK 196

Query: 117 LL--IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
           +L  I + + K   +  E+  ++D     L    SGG+++   I +   LEP + ++DE 
Sbjct: 197 ILEKIVEKSLKSAALWDEVKDDLDKAGNAL----SGGQQQRLCIARAIALEPEVLLMDEP 252

Query: 175 DSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            S LD  A     + +  L+ +  S +I+TH       I  +T+   + G I + G+
Sbjct: 253 TSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQRISDETV-FFYQGWIEEAGE 307


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 35/216 (16%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE+++L          ++ G++L + P E VAI+GP+GSGKSTL  LL+G  D     G+
Sbjct: 335 LELRDLSFG-YPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGE 391

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           +   G S+   S ++   +     F     +    +   L++     R    ++EL    
Sbjct: 392 VTLDGVSV---SSLQDELRRRISVFAQDAHLFDTTVRDNLRLG----RPDATDEELW--A 442

Query: 122 FTRKVRKITAELGINMDMLKRPLN--LG-----FSGGEKK---IAEILQMRLLEPSLCIL 171
              +V      L   +  L   L+  LG      SGGE++   +A  L   L +  + +L
Sbjct: 443 ALERVG-----LADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL---LADAPILLL 494

Query: 172 DETDSGLDIDALKIAAQGVNALRSQD--RSFLIITH 205
           DE    LD       ++ +  L +    ++ ++ITH
Sbjct: 495 DEPTEHLDAGT---ESELLEDLLAALSGKTVVVITH 527


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 58/226 (25%), Positives = 113/226 (50%), Gaps = 35/226 (15%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS- 79
           G++  +E  + +A++G +G GKSTL+ LL+  +    T G++ Y+G+ +L      +   
Sbjct: 33  GVSFTLERGKTLAVVGESGCGKSTLARLLTMIE--TPTGGELYYQGQDLLKADPEAQKLL 90

Query: 80  -KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN--EKELLI------PDFTRKVRKIT 130
            + I + FQ P              +LN ++K     E+ LLI       +   K   + 
Sbjct: 91  RQKIQIVFQNPYG------------SLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138

Query: 131 AELGINMDMLKRPLNLGFSGGEK-KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
           A++G+  +   R  ++ FSGG++ +IA I +  +L+P + + DE  S LD+    + AQ 
Sbjct: 139 AKVGLRPEHYDRYPHM-FSGGQRQRIA-IARALMLDPDVVVADEPVSALDV---SVQAQV 193

Query: 190 VNALRS-QDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           +N +   Q     S++ I+H   ++ +I  D + V++ G+ ++ G 
Sbjct: 194 LNLMMDLQQELGLSYVFISHDLSVVEHIA-DEVMVMYLGRCVEKGT 238


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 17/223 (7%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           I+ G+++   P  +  ++GPNGSGKSTL  LL+G       AG +   G  +   S   R
Sbjct: 16  IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--LRPDAGTVDLAGVDLHGLSRRAR 73

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
           A +   +       +P    +    +    +   R+      P     V +  A   ++ 
Sbjct: 74  ARRVALVEQDSDTAVP----LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS- 128

Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ--GVNALRS 195
            +  R ++   SGGE++   + +    EP L +LDE  + LD     + AQ   +  +R 
Sbjct: 129 HLADRDMST-LSGGERQRVHVARALAQEPKLLLLDEPTNHLD-----VRAQLETLALVRE 182

Query: 196 Q--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
                  ++   +   L     D + VL  G+++  G     L
Sbjct: 183 LAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKS----TLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           ++ +NL +  +EV AI+GP+G GKS    TL+ ++    + ++T G++ Y G +IL   +
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT-GEMNYNGSNILKGKV 86

Query: 75  -VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQ-RKARNEKELLIPDFTRKVRKITAE 132
            +    K I + FQ     P  I   F  +A   +    +N+K+L   +   K  K  A 
Sbjct: 87  DLVELRKNIGMVFQKGNPFPQSI---FDNVAYGPRIHGTKNKKKLQ--EIVEKSLKDVAL 141

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185
                D L     L  SGG+++   I +     P + ++DE  S LD +   KI
Sbjct: 142 WDEVKDRLHTQA-LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 47/255 (18%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKST----LSYLL---SGHKDYEITAGDILYKGESILD 71
           +  +++++   E +AI+G  GSGK+T    L+ LL   +G  ++         K +    
Sbjct: 23  LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82

Query: 72  WSIVERASKGIFLAFQYPVEIP---GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
                   K  F   +   EI    G++  QF +  L EQ     EK+++    +  V K
Sbjct: 83  VLEKLVIQKTRFKKIKKIKEIRRRVGVVF-QFAEYQLFEQTI---EKDIIFGPVSMGVSK 138

Query: 129 ITAE---------LGINMDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETD 175
             A+         +G++   L+R P  L  SGG+K+   +A IL M   EP   + DE  
Sbjct: 139 EEAKKRAAKYIELVGLDESYLQRSPFEL--SGGQKRRVALAGILAM---EPDFLVFDEPT 193

Query: 176 SGLD----IDALKIAAQGVNALRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
           +GLD     + L+I     + L  Q ++ +++TH    +L + K  TI    +GKIIK G
Sbjct: 194 AGLDPQGVKEILEI----FDNLNKQGKTIILVTHDLDNVLEWTK-RTI-FFKDGKIIKDG 247

Query: 231 D-YSIALD---LEEN 241
           D Y I  D   L EN
Sbjct: 248 DTYDILSDNKFLIEN 262


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 59/244 (24%), Positives = 118/244 (48%), Gaps = 29/244 (11%)

Query: 1   MLEIKNLRAKIVDTDT--------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH 52
           +LE++NL +K     T        E ++ L+  +   + +AI+G NGSGKSTL+ +L+G 
Sbjct: 4   LLEVRNL-SKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62

Query: 53  KDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEI--PGIIMMQFLKIALNEQRK 110
              E T+G++L      L +      S+ I + FQ P     P   + Q L   L     
Sbjct: 63  --IEPTSGELLIDDHP-LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL----- 114

Query: 111 ARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI 170
            R   +L      +++ +   ++G+  D      ++   G ++++  + +  +L P + I
Sbjct: 115 -RLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG-LARALILRPKVII 172

Query: 171 LDETDSGLDIDALKIAAQGVN-ALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKI 226
            DE  + LD   + + +Q +N  L  Q++   S++ +T +  ++ +I  D + V+H G++
Sbjct: 173 ADEALASLD---MSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS-DQVLVMHQGEV 228

Query: 227 IKTG 230
           ++ G
Sbjct: 229 VERG 232


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 15/197 (7%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESIL- 70
           + + ++ +++++  + V A++GP+G GKST    L+   D        G +  +GE I  
Sbjct: 24  EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83

Query: 71  -DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
            D  +VE   K + + FQ P   P   M  +  +A   +    N+K+L          + 
Sbjct: 84  PDVDVVE-LRKNVGMVFQKPNPFP---MSIYDNVAYGPRIHGANKKDL--DGVVENALRS 137

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188
            A      D LK P  L  SGG+++   I +   ++P + + DE  S LD I   +I   
Sbjct: 138 AALWDETSDRLKSPA-LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196

Query: 189 GVNALRSQDRSFLIITH 205
            +N    +D + +I+TH
Sbjct: 197 IMNL--KKDYTIVIVTH 211


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 24/170 (14%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYEITAGDILYKGESIL 70
           D +I+  ++  +   E   I GP+G GKSTL    + L+S       T+G +L++GE I 
Sbjct: 19  DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP------TSGTLLFEGEDIS 72

Query: 71  DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
                E   + +    Q P  + G  +   L      + +  +                 
Sbjct: 73  TLK-PEIYRQQVSYCAQTPT-LFGDTVYDNLIFPWQIRNQQPDPA---------IFLDDL 121

Query: 131 AELGINMDMLKRPLNLGFSGGEK-KIAEILQMRLLEPSLCILDETDSGLD 179
               +   +L + +    SGGEK +I+ I  ++ + P + +LDE  S LD
Sbjct: 122 ERFALPDTILTKNIA-ELSGGEKQRISLIRNLQFM-PKVLLLDEITSALD 169


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 29/210 (13%)

Query: 13  DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
               +++  +NL++ P E+V + GP+GSGK+TL  L+ G +   +  G +   G+ +   
Sbjct: 15  SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGA 72

Query: 73  SIVER--ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-----K 125
           S  E     + I   FQ         ++ FL    N Q         L P+ +      +
Sbjct: 73  SEKELVQLRRNIGYIFQ------AHNLLGFLTARQNVQMALE-----LQPNLSYQEARER 121

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDA 182
            R +   +G+   +   P NL  SGG+K+   IA  L  R   P L + DE  + LD  +
Sbjct: 122 ARAMLEAVGLGDHLDYYPHNL--SGGQKQRVAIARALVHR---PKLVLADEPTAALDSKS 176

Query: 183 LKIAAQGVNAL-RSQDRSFLIITHYQRLLN 211
            +   + +  L R Q  + LI+TH  R+L+
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNRILD 206


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 16/179 (8%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           +LEI+NL  K  D     +  ++L +   E+ A++G +G GKSTL  +L+G +  + TAG
Sbjct: 19  LLEIRNL-TKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--QPTAG 74

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
            I+  G   +D S V    + I + FQ     P + + Q +   L + +  + E      
Sbjct: 75  QIMLDG---VDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE------ 125

Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
               +V ++   + +     ++P  L  SGG+++   + +     P L +LDE    LD
Sbjct: 126 -IASRVNEMLGLVHMQEFAKRKPHQL--SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 31/216 (14%)

Query: 24  LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD-WSIVERASKGI 82
           L  +  E++ ++GPNG+GK+TL   + G        G +   G S    W  +    +  
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPAKGTVKVAGASPGKGWRHIGYVPQRH 58

Query: 83  FLAFQYPVEIPGIIM------MQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
             A+ +P+ +   +M      + +L       R+        + D  R+V     EL   
Sbjct: 59  EFAWDFPISVAHTVMSGRTGHIGWL-------RRPCVADFAAVRDALRRVG--LTELA-- 107

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
                RP+    SGG+++   + +     PS+ +LDE  +GLD+   ++  +    L   
Sbjct: 108 ----DRPVG-ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162

Query: 197 DRSFLIITHYQRLLNYIKPDTIH--VLHNGKIIKTG 230
             + L+ TH   L   +   T    VL NG++I  G
Sbjct: 163 GTAILMTTH--DLAQAM--ATCDRVVLLNGRVIADG 194


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 44/228 (19%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
           L+L     +V  ++G NGSGKSTL  +L  H+    + G+IL   + +  WS    A K 
Sbjct: 30  LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSSKAFARKV 87

Query: 82  IFLAFQYPVEIPGIIMMQFLKI-------ALNEQRKARNEKELLIPDFTRKVRKITAELG 134
            +L  Q P    G+ + + + I       AL   R    ++E        KV +  + +G
Sbjct: 88  AYLPQQLP-AAEGMTVRELVAIGRYPWHGALG--RFGAADRE--------KVEEAISLVG 136

Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLC-ILDETDSGLDIDALKIAAQGVNAL 193
           +    L   L    SGGE++ A I  M + + S C +LDE  S LDI      A  V+ L
Sbjct: 137 LK--PLAHRLVDSLSGGERQRAWI-AMLVAQDSRCLLLDEPTSALDI------AHQVDVL 187

Query: 194 R-----SQDRSFLIITHYQRLLNYIKP-----DTIHVLHNGKIIKTGD 231
                 SQ+R   +I     +L+ I       D +  L  G++I  G 
Sbjct: 188 ALVHRLSQERGLTVIA----VLHDINMAARYCDYLVALRGGEMIAQGT 231


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80
            ++      +V A+MG NG+GKSTL  +LSG  +Y+  AG IL  G+ +   S     + 
Sbjct: 22  DISFDCRAGQVHALMGENGAGKSTLLKILSG--NYQPDAGSILIDGQEMRFASTTAALAA 79

Query: 81  GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD-- 138
           G+ + +Q    +P + + + L +     +     + LL      + R+    LG+++D  
Sbjct: 80  GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN----YEAREQLEHLGVDIDPD 135

Query: 139 -MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
             LK       S G++++ EI +       +   DE  S L    ++   + +  LR++ 
Sbjct: 136 TPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG 190

Query: 198 RSFLIITHYQRLLN-YIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
           R  L ++H  R+   +   D I V  +G+ + T D     D+ +    +L++ 
Sbjct: 191 RVILYVSH--RMEEIFALCDAITVFKDGRYVATFD-----DMAQVDRDQLVQA 236


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 31/240 (12%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           M+++ +L   +   DT ++ G++L V    +V ++GPNG+GK+TL   ++G      TAG
Sbjct: 3   MIDVSDL--SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING--TLTPTAG 58

Query: 61  DILYKGESI--LDWSIVER--AS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE 114
            +L  G+ +  L      R  AS  +   L+F++ V    ++ M         +   R+ 
Sbjct: 59  TVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR--QVVEMG--------RTPHRSR 108

Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL---EPSLCIL 171
            +         V +     G+      RP+    SGGE++   +L  R L    P L +L
Sbjct: 109 FDTWTETDRAAVERAMERTGVAQ-FADRPVT-SLSGGERQ--RVLLARALAQATPVL-LL 163

Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRL-LNYIKPDTIHVLHNGKIIKTG 230
           DE  + LDI+      + V  L    ++ +   H   L   Y   D + +L +G++   G
Sbjct: 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC--DELVLLADGRVRAAG 221


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 46.6 bits (110), Expect = 6e-06
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 17/232 (7%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---I 57
           ++E +NL   +  TD + +  +N+K+  + + A++GP+G GKST    L+   D      
Sbjct: 7   IIETENL--NLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64

Query: 58  TAGDILYKGESIL--DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
             G+++Y+G++I   ++ I+E   K I + FQ P      +M  +  I+   +     +K
Sbjct: 65  IEGNVIYEGKNIYSNNFDILELRRK-IGMVFQTPNP---FLMSIYDNISYGPKIHGTKDK 120

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
           + L  +   +  K +A      D L     L  SGG+++   I +   +EP++ ++DE  
Sbjct: 121 KKL-DEIVEQSLKKSALWNEVKDKLNTNA-LSLSGGQQQRLCIARTLAIEPNVILMDEPT 178

Query: 176 SGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           S LD I   KI    +N   S   + +I+TH  +    I   T   L NG I
Sbjct: 179 SALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFL-NGCI 227


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 35/238 (14%)

Query: 1   MLEIKNLRAKIVDTDTE--IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           ++E+KNL  K    D E   +  ++  V+  E ++I+G NGSGKST   L+ G  + E  
Sbjct: 4   IIEVKNLTFK-YKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-- 60

Query: 59  AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFL------KIALNEQRKAR 112
           +G I+  G+ + + ++ +   K I + FQ P         QF+       +A   + K  
Sbjct: 61  SGQIIIDGDLLTEENVWDIRHK-IGMVFQNPDN-------QFVGATVEDDVAFGLENKGI 112

Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLC 169
             +E+       +V +    +G+     + P  L  SGG+K+   IA  + MR   P + 
Sbjct: 113 PHEEM-----KERVNEALELVGMQDFKEREPARL--SGGQKQRVAIAGAVAMR---PKII 162

Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLI-ITHYQRLLNYIKPDTIHVLHNGKI 226
           ILDE  S LD +      + +  +R   +  +I ITH   L      D + V+ NG++
Sbjct: 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNGQV 218


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 34/206 (16%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH--KDYEITAGDILYKGESILDWSI 74
            +++ ++   +P E++A+MG +G+GK+TL   L+    K  +  +G +L  G  I    +
Sbjct: 39  HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG-SGSVLLNGMPIDAKEM 97

Query: 75  VERASKGIFLAFQYPVEIPG------IIMMQFLKIALNEQRKARNE--KELLIPDFTRKV 126
              ++       Q  + IP       ++    L++     +K + E   E+L     RK 
Sbjct: 98  RAISA----YVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC 153

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDAL 183
                 +G+   +       G SGGE+K    A  L   L +P L   DE  SGLD    
Sbjct: 154 ANTR--IGVPGRV------KGLSGGERKRLAFASEL---LTDPPLLFCDEPTSGLDS--- 199

Query: 184 KIAAQGVNALR--SQDRSFLIITHYQ 207
            +A   V  L+  +Q    +I T +Q
Sbjct: 200 FMAYSVVQVLKGLAQKGKTIICTIHQ 225


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 40/227 (17%)

Query: 25  KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY--EITAGDILYKGESILDWSIVER---AS 79
            V+  EVV I+G +GSGKS  S  + G  DY   + A  + + G+ +   S  ER     
Sbjct: 29  SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88

Query: 80  KGIFLAFQYPVE------IPGIIMMQFLKIALNEQRKARNEK--ELL----IPDFTRKVR 127
             + + FQ P+         G  +M+ +K+     +K R ++  +LL    IPD   ++ 
Sbjct: 89  AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLD 148

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
               +L               SGG  +   I       P L I DE  + LD+    I A
Sbjct: 149 VYPHQL---------------SGGMSQRVMIAMAIACRPKLLIADEPTTALDV---TIQA 190

Query: 188 QGVNAL----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           Q +  L    + ++ + ++ITH   L+       I V++ G++++TG
Sbjct: 191 QIIELLLELQQKENMALVLITHDLALVAEAA-HKIIVMYAGQVVETG 236


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 20/201 (9%)

Query: 34  IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIP 93
           ++GP+G GK+TL  LL+G +  +  +G I+  GE +   + V    + I + FQ     P
Sbjct: 1   LLGPSGCGKTTLLRLLAGFE--QPDSGSIMLDGEDV---TNVPPHLRHINMVFQSYALFP 55

Query: 94  GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM-DMLKR-PLNLGFSGG 151
            + + + +   L  ++  R E          K R + A   + + +   R P  L  SGG
Sbjct: 56  HMTVEENVAFGLKMRKVPRAE---------IKPRVLEALRLVQLEEFADRKPHQL--SGG 104

Query: 152 EKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLL 210
           +++   + +  + +P + +LDE  S LD          +  ++ Q   +F+ +TH Q   
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164

Query: 211 NYIKPDTIHVLHNGKIIKTGD 231
             +  D I ++  GKI + G 
Sbjct: 165 MTMS-DRIAIMRKGKIAQIGT 184


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 28/223 (12%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
           D  ++  L+  +   E   ++GPNG+GKST++ +L G    +   G I   GE +   + 
Sbjct: 16  DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--GKITVLGEPVPSRAR 73

Query: 75  VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP---DFTRKVRKITA 131
           + R + G+    Q+    P   + + L +       +  E E +IP   +F R   K   
Sbjct: 74  LARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV 131

Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
            + +             SGG K+   + +  + +P L ILDE  +GLD  A  +  + + 
Sbjct: 132 RVAL------------LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179

Query: 192 ALRSQDRSFLIITHY----QRLLNYIKPDTIHVLHNGKIIKTG 230
           +L ++ ++ L+ TH+    +RL      D + VL +G+ I  G
Sbjct: 180 SLLARGKTILLTTHFMEEAERLC-----DRLCVLESGRKIAEG 217


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 26/203 (12%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK-----DYEITAGDILYKGESI 69
             E I+G++++ E +++ A++GP+GSGKST  YL S ++     D     G ILY+G  I
Sbjct: 32  KKEAIKGIDMQFEKNKITALIGPSGSGKST--YLRSLNRMNDTIDIARVTGQILYRGIDI 89

Query: 70  LDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
               I V    K I + FQ P      I   +  I    +R    +K++L       +++
Sbjct: 90  NRKEINVYEMRKHIGMVFQRPNPFAKSI---YENITFALERAGVKDKKVLDEIVETSLKQ 146

Query: 129 ITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDA 182
             A L    D +K  L+   L  SGG+++   IA  + ++   P + ++DE  S LD  +
Sbjct: 147 --AAL---WDQVKDDLHKSALTLSGGQQQRLCIARAIAVK---PDILLMDEPASALDPIS 198

Query: 183 LKIAAQGVNALRSQDRSFLIITH 205
                + +  L+ ++ + +I+TH
Sbjct: 199 TMQLEETMFELK-KNYTIIIVTH 220


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 30/195 (15%)

Query: 1   MLEIKNLRAKIV-----DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY 55
           +LE+++L               +++ ++L V   E VA+ GP+G+GKSTL  L S + +Y
Sbjct: 1   LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTL--LKSLYANY 58

Query: 56  EITAGDILYK-GESILD------WSIVERASKGIFLAFQYPVEIPGI----IMMQFLKIA 104
              +G IL +   + +D        ++E   K I    Q+   IP +    ++ + L   
Sbjct: 59  LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER 118

Query: 105 LNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL 164
              +  AR     L+           A L I   +   P    FSGGE++   I +  + 
Sbjct: 119 GVPREAARARARELL-----------ARLNIPERLWHLPPAT-FSGGEQQRVNIARGFIA 166

Query: 165 EPSLCILDETDSGLD 179
           +  + +LDE  + LD
Sbjct: 167 DYPILLLDEPTASLD 181


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 35/201 (17%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA-----GDILYKGESILDWSI-- 74
           +NL +EP  V A +GP+G GKST   L + ++ +E+       G++L  GE +    +  
Sbjct: 23  VNLNIEPRSVTAFIGPSGCGKST--VLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80

Query: 75  --VERASKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
             V R    I + FQ P   P + +       + LN  R  ++  EL+     + +R   
Sbjct: 81  VAVRRT---IGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELV----EKSLR--- 130

Query: 131 AELGINM-----DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALK 184
              G N+     D L +P   G SGG+++   I +   +EP + ++DE  S LD I  L 
Sbjct: 131 ---GANLWNEVKDRLDKP-GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186

Query: 185 IAAQGVNALRSQDRSFLIITH 205
           I    +N L+ QD + +I+TH
Sbjct: 187 I-EDLINELK-QDYTIVIVTH 205


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE++NL  K  D +  + + LNL +E  E +AI+G NG GK+TL   L G  + E  +G 
Sbjct: 320 LEVENL-TKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG--ELEPDSGT 375

Query: 62  I 62
           +
Sbjct: 376 V 376



 Score = 28.3 bits (64), Expect = 1.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 36 GPNGSGKSTLSYLLSGHKDYEITAGDI 62
          G NG GKST   +L G  D E +AG++
Sbjct: 34 GANGCGKSTFMKILGG--DLEPSAGNV 58


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 45/259 (17%)

Query: 1   MLEIKNLRA---KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
           ML    + A   KI     + +  ++L +   E+V ++G NG+GK+TL   L G  D   
Sbjct: 5   MLSFDKVSAHYGKI-----QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRA 57

Query: 58  TAGDILYKGESILDWSIVERASKGIFLA------FQYPVEIPGIIMMQFLKIALNEQRKA 111
           T+G I++ G+ I DW   +   + + +       F        + M  F       Q + 
Sbjct: 58  TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI 117

Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
           +   EL      R++++                    SGGE+++  I +  + +P L +L
Sbjct: 118 KWVYELFPRLHERRIQRAGT----------------MSGGEQQMLAIGRALMSQPRLLLL 161

Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRS-FLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           DE   GL    ++     +  LR Q  + FL+  +  + L     D  +VL NG ++   
Sbjct: 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKL--ADRGYVLENGHVV--- 216

Query: 231 DYSIALDLEENGYAELIKE 249
                  LE+ G A L  E
Sbjct: 217 -------LEDTGDALLANE 228


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 23/165 (13%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
           ++G+NL ++  E ++++G +G GKSTL  L+SG    + T+G ++ +G+ I         
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQI------TEP 52

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL-GINM 137
                + FQ    +P + + + + +A++      ++ E       R + +    L G+  
Sbjct: 53  GPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE------RRAIVEEHIALVGLTE 106

Query: 138 DMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD 179
              KRP  L  SGG K+   IA  L +R   P + +LDE    LD
Sbjct: 107 AADKRPGQL--SGGMKQRVAIARALSIR---PKVLLLDEPFGALD 146


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 27/219 (12%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDYEITAGDILYKGESILDWSIVERA 78
           ++L+V+     A++G  GSGKSTL   L+G     + ++T GDI+    S      ++  
Sbjct: 25  IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS--KQKEIKPV 82

Query: 79  SKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAE----L 133
            K + + FQ+P     +     LK +A   Q     +++           KI AE    +
Sbjct: 83  RKKVGVVFQFPES--QLFEETVLKDVAFGPQNFGIPKEK---------AEKIAAEKLEMV 131

Query: 134 GINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
           G+  +   K P  L  SGG+ +   I  +  +EP + +LDE  +GLD  A     Q   +
Sbjct: 132 GLADEFWEKSPFEL--SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189

Query: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
           +    ++ +++TH    + +Y   D +++L  G II  G
Sbjct: 190 IHQSGQTVVLVTHLMDDVADY--ADYVYLLEKGHIISCG 226


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
          protein; Provisional.
          Length = 648

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 1  MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49
          +LE+K++R      +   E+++G++L +   E+VAI+G +GSGKSTL  +L
Sbjct: 4  LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
          ATP-binding protein; Provisional.
          Length = 491

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69
          NLKV P  + A+MG NG+GKSTL   L G   Y+  +G IL++G+ I
Sbjct: 18 NLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGKEI 62



 Score = 28.2 bits (63), Expect = 2.3
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 149 SGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQR 208
           SGG ++   I +  L +P + +LDE   G+D+ A     Q +  L  +D+  +II+    
Sbjct: 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452

Query: 209 LLNYIKPDTIHVLHNGKI 226
            L  I  D I V+ NG +
Sbjct: 453 ELLGIT-DRILVMSNGLV 469


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 70/241 (29%), Positives = 107/241 (44%), Gaps = 41/241 (17%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80
           G  L V P  V+A++G NG+GKST+  +L+G   Y   AG ILY G+ +           
Sbjct: 22  GAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQEA 79

Query: 81  GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV-----RKITAELGI 135
           GI +  Q    IP       L IA         E   L  +F  +      +K+ AE   
Sbjct: 80  GIGIIHQELNLIPQ------LTIA---------ENIFLGREFVNRFGRIDWKKMYAE--- 121

Query: 136 NMDMLKRPLNLGFSG---------GEKKIAEILQMRLLEPSLCILDE-TDSGLDIDALKI 185
             D L   LNL FS          GE+++ EI ++   E  + I+DE TD+  D +   +
Sbjct: 122 -ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180

Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245
               +  L+SQ R  + I+H  + +  I  D + V  +G+ I   +  +A DL E+   E
Sbjct: 181 FRV-IRELKSQGRGIVYISHRLKEIFEI-CDDVTVFRDGQFI--AEREVA-DLTEDSLIE 235

Query: 246 L 246
           +
Sbjct: 236 M 236


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 30/201 (14%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYKGESILD 71
           +  + + +  + V A++GP+G GKSTL       + L+ G +   IT GDILY GE+I+D
Sbjct: 22  LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR---IT-GDILYNGENIMD 77

Query: 72  WSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
               V    + I + FQ P   P  I   +  +A   +      K+ L     + ++   
Sbjct: 78  SGADVVALRRKIGMVFQRPNPFPKSI---YENVAYGPRIHGEKNKKTLDTIVEKSLKG-- 132

Query: 131 AELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
           A L    D +K  L+   L  SGG+++   I +   + P + ++DE  S LD     IA 
Sbjct: 133 AAL---WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD----PIAT 185

Query: 188 QGVNAL---RSQDRSFLIITH 205
             +  L     ++ + +I+TH
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTH 206


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG---ESILDWSIV 75
           ++  +L +E  E+  IMG +GSGKST+  LL+  +  E T G +L  G     I D  + 
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN--RLIEPTRGQVLIDGVDIAKISDAELR 101

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
           E   K I + FQ    +P + ++      +        E+     D  R+V       G+
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-------GL 154

Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALR 194
                  P  L  SGG ++   + +   + P + ++DE  S LD +   ++  + V    
Sbjct: 155 ENYAHSYPDEL--SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212

Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243
              R+ + I+H       I  D I ++ NG++++ G     L+   N Y
Sbjct: 213 KHQRTIVFISHDLDEAMRIG-DRIAIMQNGEVVQVGTPDEILNNPANDY 260


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 10/193 (5%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWS 73
           ++++ +N+     ++ AI+GP+G GKSTL   L+   D    A   G +L   E+I   +
Sbjct: 18  QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77

Query: 74  I-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
           + V    K + + FQ P   P  I   F  +A   +      +  L     + +R+    
Sbjct: 78  LDVVNLRKRVGMVFQQPNPFPKSI---FDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW 134

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
             +  ++ K  L L  SGG+++   I ++  +EP + ++DE  S LD  +     + +  
Sbjct: 135 DEVKDNLHKSGLAL--SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192

Query: 193 LRSQDRSFLIITH 205
           L+ Q+ +  I+TH
Sbjct: 193 LK-QNYTIAIVTH 204


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
          protein; Reviewed.
          Length = 375

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
          +E++ +  K  D   E+I  L+L +   E + ++GP+G GK+T+  L++G +     +G 
Sbjct: 15 VELRGIS-KSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPDSGR 70

Query: 62 ILYKGESI 69
          I+  G+ I
Sbjct: 71 IMLDGQDI 78


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 2/48 (4%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69
           +NL ++  E++ ++G NGSGKSTL+ LL+G   Y+  +G+IL  G+ +
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGL--YQPQSGEILLDGKPV 387


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
          Provisional.
          Length = 255

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL----SYLLSGHKDYE 56
           L  +NL          I+  L+L +   ++ A++GPNG GKSTL    + LL+      
Sbjct: 2  TLRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP----- 54

Query: 57 ITAGDILYKGESILDWSIVERASKGIFLAFQYPV 90
            +G +    + I   S  + A +   L   +  
Sbjct: 55 -QSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 39/247 (15%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           LE KNL  +        +  ++L V  + V  ++GPNG+GKSTL  +++G      T+G+
Sbjct: 1   LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--LRPTSGE 56

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I++ G     W+  +    G        +E P +    +  +   E  K      L +PD
Sbjct: 57  IIFDGH---PWTRKDLHKIGSL------IESPPL----YENLTARENLKVHT-TLLGLPD 102

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
              ++ ++   + +     K+     FS G K+   I    L  P L ILDE  +GLD  
Sbjct: 103 --SRIDEVLNIVDLTNTGKKKAKQ--FSLGMKQRLGIAIALLNHPKLLILDEPTNGLD-- 156

Query: 182 ALKIAAQGVNALRSQDRSF------LIITHYQRLLNYIK--PDTIHVLHNGKIIKTGDYS 233
                  G+  LR   RSF      +I++ +  +L+ ++   D I ++  G +   G  +
Sbjct: 157 -----PIGIQELRELIRSFPEQGITVILSSH--ILSEVQQLADHIGIISEGVLGYQGKIN 209

Query: 234 IALDLEE 240
            + +LE+
Sbjct: 210 KSENLEK 216


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 26/227 (11%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           ++ GLN  V   E VA++GP+GSGKST+  +L   +   I  G I  +GE +  + +  R
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQL--YHMPGR 70

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAE---- 132
               +    ++  ++   I M F    L   +    N  E   P     + +  AE    
Sbjct: 71  NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE--APVLVLGMARAEAEKRAM 128

Query: 133 -----LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
                +G+       P  L  SGG+++   I +   + P + + DE  S LD +   +  
Sbjct: 129 ELLDMVGLADKADHMPAQL--SGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVG 183

Query: 188 QGVNALR----SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           + +N +R      D + L++TH          D +     G+I++ G
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFA-DRVCFFDKGRIVEQG 229


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 31/246 (12%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI---TAGDILYKGESILDWS 73
           +I+  +NL +   EV A +GP+G GKST     +   D+       G++   G  +    
Sbjct: 19  QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78

Query: 74  ---IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK--ARNEKEL--LIPDFTRKV 126
              ++ RA  G  + FQ P   P  I   +  +A   +    A+N+K+L  ++      V
Sbjct: 79  TNVVLLRAKVG--MVFQKPNPFPKSI---YDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133

Query: 127 RKITAELGINMDMLK-RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
             +  ELG   D LK     L  SGG+++   I +   ++P++ ++DE  S LD  A  +
Sbjct: 134 -GLWEELG---DRLKDSAFEL--SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV 187

Query: 186 AAQGVNALRSQDRSFLII--THYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243
                N ++   ++F II  TH  +    +  D +    +G+I++        ++ +N  
Sbjct: 188 IE---NLIQELKKNFTIIVVTHSMKQAKKVS-DRVAFFQSGRIVEYNTTQ---EIFKNPQ 240

Query: 244 AELIKE 249
           +   K 
Sbjct: 241 SSKTKR 246


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 21/193 (10%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI---LDWSIV 75
           +R  +  V    + A++G NGSGKSTL   L G     + +G I   G+     L  ++V
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--VRLASGKISILGQPTRQALQKNLV 80

Query: 76  ERASKGIFLAFQYPVEIPGIIMM-QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
               +   + + +PV +  ++MM ++  +    + K R+             R+I     
Sbjct: 81  AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD-------------RQIVTAAL 127

Query: 135 INMDMLK-RPLNLG-FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
             +DM++ R   +G  SGG+KK   + +    +  + +LDE  +G+D+         +  
Sbjct: 128 ARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187

Query: 193 LRSQDRSFLIITH 205
           LR + ++ L+ TH
Sbjct: 188 LRDEGKTMLVSTH 200


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           I+ G+ L V+  E +A++G +GSGKSTL  +L+G  D   ++G++   G+ +       R
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEAR 82

Query: 78  A---SKGIFLAFQYPVEIPGIIMMQFLKI-AL----NEQRKARNEKELLIPDFTRKVRKI 129
           A   +K +   FQ  + IP +  ++ +++ AL    + ++     K LL           
Sbjct: 83  AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALL----------- 131

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID-ALKIAAQ 188
             +LG+   +   P  L  SGGE++   + +     P +   DE    LD     KIA  
Sbjct: 132 -EQLGLGKRLDHLPAQL--SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188

Query: 189 GVNALRSQDRSFLIITHYQRL 209
             +  R    + +++TH  +L
Sbjct: 189 LFSLNREHGTTLILVTHDLQL 209


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%)

Query: 145 NLGFSGGE-KKIAEILQMRLLEP-SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLI 202
             G S G+ +++A  L   LL+P  L +LDE  + LD  + ++  Q +NA  S+ ++ L+
Sbjct: 483 AAGLSVGQAQRLA--LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLM 539

Query: 203 ITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246
           +TH  +L +  + D I V+ +G+I++ GDY+  L      +A L
Sbjct: 540 VTH--QLEDLAQWDQIWVMQDGQIVQQGDYA-ELSQAGGLFATL 580



 Score = 33.7 bits (78), Expect = 0.042
 Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 2   LEIKNLRAKIVDTDTEIIRG-LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE 56
           +E ++L  +I+  D + + G LN  +   + +A++GP+G+GK++L   L G   Y+
Sbjct: 350 IEAEDL--EILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ 403


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK--GESILDWSIVERAS 79
           +N+++E +++ A++G +G GKST     +   D +I   D L +  G+ + +  +V    
Sbjct: 21  INMQIEQNKITALIGASGCGKSTFLRCFNRMND-KIAKIDGLVEIEGKDVKNQDVVA-LR 78

Query: 80  KGIFLAFQYP-VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
           K + + FQ P V +  I         L+   K ++E+E L+ D  +KV  +  E+    D
Sbjct: 79  KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEV---KD 134

Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198
            LK+   L  SGG+++   I +   ++P L +LDE  S LD  +  +  + +  L S + 
Sbjct: 135 KLKQNA-LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNL 192

Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           S +++TH  +    +  D     H G++I+ G+
Sbjct: 193 SMIMVTHNMQQGKRVA-DYTAFFHLGELIEFGE 224


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 48/213 (22%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 18   IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            ++ GL+  V PSE V ++G  G+GKS  S L +  +  E+  G I+     +  + + + 
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKS--SMLNALFRIVELEKGRIMIDDCDVAKFGLTD- 1307

Query: 78   ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
              + + +  Q PV   G +  +F     +E   A   + L        + +     G++ 
Sbjct: 1308 LRRVLSIIPQSPVLFSGTV--RFNIDPFSEHNDADLWEALERAHIKDVIDR--NPFGLDA 1363

Query: 138  DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
            ++ +   N  FS G++++  + +  L    + +LDE  + +D+   +  +     +R + 
Sbjct: 1364 EVSEGGEN--FSVGQRQLLSLARALLRRSKILVLDEATASVDV---RTDSLIQRTIREEF 1418

Query: 198  RS--FLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
            +S   L+I H  RL   I  D I VL +G++++
Sbjct: 1419 KSCTMLVIAH--RLNTIIDCDKILVLSSGQVLE 1449


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EITAGDILYKGESIL 70
           + + +  +NL +  +++ A++GP+G GKST    L+   D     +I  G++L  G++I 
Sbjct: 16  EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIY 74

Query: 71  DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
           D  + V    K + + FQ P   P   M  +  +A   +     +K+ L       ++K 
Sbjct: 75  DKDVDVVELRKRVGMVFQKPNPFP---MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131

Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQ 188
                +  D+ K  L L  SGG+++   I +   ++P + ++DE  S LD I  LKI  +
Sbjct: 132 ALWDEVKDDLKKSALKL--SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKI--E 187

Query: 189 GVNALRSQDRSFLIITH 205
            +     ++ + +I+TH
Sbjct: 188 DLMVELKKEYTIVIVTH 204


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 31/244 (12%)

Query: 20  RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY--KGESILDWSIVER 77
           R ++  + P EV+ I+G +GSGKSTL   L+G        G   Y  +  + L+   +  
Sbjct: 20  RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--LAPDHGTATYIMRSGAELELYQLSE 77

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAELGIN 136
           A +   +  ++     G +  Q  +  L  +  A  N  E L+    R    I A     
Sbjct: 78  AERRRLMRTEW-----GFV-HQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDW 131

Query: 137 MDMLKRPLN------LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
           ++ ++            FSGG ++  +I +  +  P L  +DE   GLD+    + A+ +
Sbjct: 132 LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLL 188

Query: 191 NALRSQDRSF----LIITH---YQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243
           + LR   R      +I+TH     RLL       + V+  G+++++G     LD  ++ Y
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLL----AQRLLVMQQGRVVESGLTDQVLDDPQHPY 244

Query: 244 AELI 247
            +L+
Sbjct: 245 TQLL 248


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 17/199 (8%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71
           + + +  ++L +    V A +GP+G GKST    L+   D        G I   GE I D
Sbjct: 31  EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90

Query: 72  WSI--VE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK--ARNEKELLIPDFTRKV 126
             +  VE RA  G  + FQ P   P  I   +  +A   +    AR++ EL   +     
Sbjct: 91  PRLDVVELRARVG--MVFQKPNPFPKSI---YENVAYGPRIHGLARSKAEL--DEIVETS 143

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
            +         D L  P   G SGG+++   I +   + P + ++DE  S LD  A    
Sbjct: 144 LRKAGLWEEVKDRLHEP-GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202

Query: 187 AQGVNALRSQDRSFLIITH 205
            + ++ LR    + +I+TH
Sbjct: 203 EELIDELRQN-YTIVIVTH 220


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 4/43 (9%)

Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          I+R L+L++EP  V A++G NG+GKSTL   L+G    ++T G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG----DLTGG 54


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 13/220 (5%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGDILYKGESILDWS 73
           E ++G++L    +E+ A++GP+G GKST    L+   D        G++  +G++I   +
Sbjct: 19  EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78

Query: 74  I-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
             V +  K + + FQ P   P  I   +  +    +     +K +L       +++    
Sbjct: 79  EDVVQLRKQVGMVFQQPNPFPFSI---YENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191
             +   + +  L+L  SGG+++   I ++  ++P + +LDE  S LD I + +I    + 
Sbjct: 136 DEVKDHLHESALSL--SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193

Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
            LR Q  + +++TH     + I   T   L  G +I+  D
Sbjct: 194 -LRDQ-YTIILVTHSMHQASRISDKTAFFL-TGNLIEFAD 230


>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
          Length = 172

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82
           V I G +GSGK+TL+  L+    +++   D LY G   L       AS+ +
Sbjct: 17 TVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAA-----ASEHV 63


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 40/206 (19%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-----TAGDILYKGESILDWS 73
           ++ +NL +  ++V A +GP+G GKSTL  L + ++ YE+       G+IL  GE+IL   
Sbjct: 29  LKNINLDIAKNQVTAFIGPSGCGKSTL--LRTFNRMYELYPEQRAEGEILLDGENILTPK 86

Query: 74  I---VERASKGIFLAFQYPVEIPGIIMMQFLKIA----LNEQRKARNEKELLIPDFTRKV 126
               + RA  G  + FQ P   P   M  +  IA    L E + +R E +  +     K 
Sbjct: 87  QDIALLRAKVG--MVFQKPTPFP---MSIYDNIAFGVRLFE-KLSRAEMDERVEWALTK- 139

Query: 127 RKITAELGINMDMLKRPLN---LGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLD- 179
               A L    + +K  L+      SGG+++   IA  + +R   P + +LDE  S LD 
Sbjct: 140 ----AAL---WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR---PEVLLLDEPCSALDP 189

Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205
           I   +I  + +  L+ QD + +I+TH
Sbjct: 190 ISTGRI-EELITELK-QDYTVVIVTH 213


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
          Provisional.
          Length = 258

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGES 68
          R ++  + P EV+ I+G +GSGK+TL   LS        AG++ Y+   
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--LAPDAGEVHYRMRD 69



 Score = 28.7 bits (65), Expect = 1.6
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 28/97 (28%)

Query: 148 FSGGEKKIAEILQMRL-------LEPSLCILDETDSGLDIDALKIAAQGVNALRS----Q 196
           FSGG       +Q RL         P L  +DE   GLD+    + A+ ++ LR      
Sbjct: 152 FSGG-------MQQRLQIARNLVTHPRLVFMDEPTGGLDV---SVQARLLDLLRGLVREL 201

Query: 197 DRSFLIITH---YQRLLNYIKPDTIHVLHNGKIIKTG 230
             + +I+TH     RLL       + V+  G+++++G
Sbjct: 202 GLAVVIVTHDLAVARLL----AHRLLVMKQGRVVESG 234


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 25/243 (10%)

Query: 4   IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD-YEITA-GD 61
            + L+        +I++ ++  ++P E+  ++G  GSG STL   ++ + D + I   G 
Sbjct: 62  FRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I Y G +  +  I +     +    +  V  P + + + L  A   +        +   +
Sbjct: 122 ITYDGITPEE--IKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179

Query: 122 FTRKVRKIT-AELGINM--------DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
           + + +  +  A  G++         D ++     G SGGE+K   I +  L    +   D
Sbjct: 180 YAKHIADVYMATYGLSHTRNTKVGNDFVR-----GVSGGERKRVSIAEASLGGAKIQCWD 234

Query: 173 ETDSGLDIDALKIAAQGVNALRSQDR---SFLIITHYQRLLN-YIKPDTIHVLHNGKIIK 228
               GLD      A + + AL++      +  ++  YQ   + Y   D + VL+ G  I 
Sbjct: 235 NATRGLDSAT---ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY 291

Query: 229 TGD 231
            G 
Sbjct: 292 FGP 294



 Score = 36.2 bits (84), Expect = 0.007
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDILYKG 66
           V+P  + A+MG +G+GK+TL  +L+       IT GD L  G
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 54/232 (23%)

Query: 23  NLKVEPSEVVAIMGPNGSGKSTLSYLLSGH----------KDYEITAGDILYKGESILDW 72
           N+ +     VAI+G  GSGKSTL   L+G            +  ITAG    K    L  
Sbjct: 27  NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAG----KKNKKL-- 80

Query: 73  SIVERASKGIFLAFQYP--------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR 124
              +   K + + FQ+P        VE           I         +E++       +
Sbjct: 81  ---KPLRKKVGIVFQFPEHQLFEETVE---------KDICFGPMNFGVSEEDAK-----Q 123

Query: 125 KVRKITAELGINMDMLKR-PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDI 180
           K R++   +G+  ++L R P  L  SGG+ +   IA +L M   EP + +LDE  +GLD 
Sbjct: 124 KAREMIELVGLPEELLARSPFEL--SGGQMRRVAIAGVLAM---EPEVLVLDEPTAGLDP 178

Query: 181 DALKIAAQGVNAL-RSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
              K   +    L + +  + +++TH  +    Y   D I V+H G +   G
Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY--ADQIVVMHKGTVFLQG 228


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 46/244 (18%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           + +KN+  K   ++T +I  LNL ++   +V ++GP+G GK+T+  L++G +  + T G 
Sbjct: 7   VVLKNI-TKRFGSNT-VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE--KPTEGQ 62

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIP----------GIIMMQFLKIALNEQRKA 111
           I   GE +   SI +R    I + FQ     P          G+ M+   K    E+RK 
Sbjct: 63  IFIDGEDVTHRSIQQR---DICMVFQSYALFPHMSLGENVGYGLKMLGVPK----EERKQ 115

Query: 112 RNEKELLIPDFT----RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPS 167
           R ++ L + D      R V +I                   SGG+++   + +  +L+P 
Sbjct: 116 RVKEALELVDLAGFEDRYVDQI-------------------SGGQQQRVALARALILKPK 156

Query: 168 LCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
           + + DE  S LD +  +   + +  L+ Q + + L +TH Q    +   DT+ V++ GKI
Sbjct: 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVIVMNKGKI 215

Query: 227 IKTG 230
           ++ G
Sbjct: 216 MQIG 219


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 15  DTE-IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE---ITAGDILYKGESIL 70
           DT+ I+ G+++++  S+V AI+GP+G GKST    L+   + E      G + +  ++I 
Sbjct: 18  DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77

Query: 71  DWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
           +  + + R  + + +    P   P   M  +  +A   +      K L I D      K 
Sbjct: 78  ERRVNLNRLRRQVSMVHPKPNLFP---MSVYDNVAYGVKIVGWRPK-LEIDDIVESALK- 132

Query: 130 TAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185
            A+L    D +K  ++   L  SGG+++   I +   ++P + ++DE   GLD I ++K+
Sbjct: 133 DADL---WDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189

Query: 186 AAQGVNALRSQDRSFLIITH 205
            +   +     + + +I++H
Sbjct: 190 ESLIQSLRLRSELTMVIVSH 209


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 31/216 (14%)

Query: 28  PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIVERASKGIFLA 85
           P E ++++G +GSGKST    L   +  E   G+I++ G+ I  L    ++   + I   
Sbjct: 349 PGETLSLVGESGSGKSTTGRALL--RLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFI 406

Query: 86  FQYPV------EIPGIIMMQFLKI-ALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
           FQ P       +  G  +M+ L++  L   + A             +V  +   +G+  +
Sbjct: 407 FQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----------ARVAWLLERVGLLPE 455

Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198
              R  +  FSGG+++   I +   L P + I DE  S LD+    I  Q +N L    R
Sbjct: 456 HAWRYPH-EFSGGQRQRICIARALALNPKVIIADEAVSALDV---SIRGQIINLLLDLQR 511

Query: 199 ----SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
               ++L I+H   ++  I    + V++ G+I++ G
Sbjct: 512 DFGIAYLFISHDMAVVERIS-HRVAVMYLGQIVEIG 546



 Score = 29.1 bits (65), Expect = 1.0
 Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 42/257 (16%)

Query: 1   MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
           +L ++NL    +    +I  +R L+  ++  E +AI+G +GSGKS  +  L+  +  E  
Sbjct: 12  VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA--LALMRLLEQA 69

Query: 59  AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI----IMMQFLK--IALN------ 106
            G +  + + +L   +  R+ + I L+ Q   ++  +    + M F +   +LN      
Sbjct: 70  GGLV--QCDKML---LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVG 124

Query: 107 EQ--RKARNEKELLIPDFTRKVRKITAELGI--NMDMLKR-PLNLGFSGGEKK---IAEI 158
           EQ     R  +     +   + +++  ++ I     +L R P  L  SGG ++   IA  
Sbjct: 125 EQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL--SGGMRQRVMIAMA 182

Query: 159 LQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR--SQDRSF--LIITHYQRLLNYIK 214
           L  R   P++ I DE  + LD+    I AQ +  ++   ++ S   + ITH   ++  I 
Sbjct: 183 LSCR---PAVLIADEPTTALDV---TIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236

Query: 215 PDTIHVLHNGKIIKTGD 231
            D + V++ G+ ++TG 
Sbjct: 237 -DRVLVMYQGEAVETGS 252


>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
          YrbF; Provisional.
          Length = 269

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDW 72
          +  I   ++L V   ++ AIMGP+G GK+TL  L+ G    +   G+IL+ GE+I  +  
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEILFDGENIPAMSR 76

Query: 73 SIVERASKGIFLAFQ 87
          S +    K + + FQ
Sbjct: 77 SRLYTVRKRMSMLFQ 91


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
          model describes FtsE, a member of the ABC transporter
          ATP-binding protein family. This protein, and its
          permease partner FtsX, localize to the division site.
          In a number of species, the ftsEX gene pair is located
          next to FtsY, the signal recognition particle-docking
          protein.
          Length = 214

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TA 59
          M+E  N+ +K        +  ++L +   E + + GP+G+GK+TL  LL G       + 
Sbjct: 1  MIEFHNV-SKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG---ALTPSR 56

Query: 60 GDILYKGESILD 71
          G +   GE +  
Sbjct: 57 GQVRIAGEDVNR 68


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 46/220 (20%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI-LYKGESILDWS 73
           D  I+  + L + P   + ++G NG+GKSTL  LL+G  +    +G+I L KG  +    
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG--ELAPVSGEIGLAKGIKL---- 377

Query: 74  IVERASKGIF----LAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
                  G F    L F    E P    +Q L       R A  E E       +K+R  
Sbjct: 378 -------GYFAQHQLEFLRADESP----LQHL------ARLAPQELE-------QKLRDY 413

Query: 130 TAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
               G   D +       FSGGEK    +A I+  R   P+L +LDE  + LD+D  +  
Sbjct: 414 LGGFGFQGDKVTEETRR-FSGGEKARLVLALIVWQR---PNLLLLDEPTNHLDLDMRQAL 469

Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
            +   AL   + + ++++H + LL     D ++++H+GK+
Sbjct: 470 TE---ALIDFEGALVVVSHDRHLLRSTT-DDLYLVHDGKV 505



 Score = 39.4 bits (92), Expect = 0.001
 Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 37/218 (16%)

Query: 11  IVDTDTEIIRGLNL-------KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA--GD 61
           IV +  +I RG+ +        + P + V ++G NG GKSTL  LL      EI+A  G 
Sbjct: 2   IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKN----EISADGGS 57

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--- 118
             + G   L W   E  +     A +Y   I G    + L+  L+     RN+   +   
Sbjct: 58  YTFPGNWQLAWVNQETPALPQ-PALEYV--IDGDREYRQLEAQLH-DANERNDGHAIATI 113

Query: 119 ------IPDFTRKVR--KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI 170
                 I  +T + R   +   LG + + L+RP++  FSGG +    + Q  +    L +
Sbjct: 114 HGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS-DFSGGWRMRLNLAQALICRSDLLL 172

Query: 171 LDETDSGLDIDA-------LKIAAQGVNALRSQDRSFL 201
           LDE  + LD+DA       LK + QG   L S DR FL
Sbjct: 173 LDEPTNHLDLDAVIWLEKWLK-SYQGTLILISHDRDFL 209


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 27/243 (11%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGL---NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
           M+++ N+  K+    T+ I+ L   +L V   ++  ++G +G+GKSTL   ++  +    
Sbjct: 1   MIKLSNI-TKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RP 57

Query: 58  TAGDILYKGESILDWSIVE--RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
           T+G ++  G+ +   S  E  +A + I + FQ+   +    +   + + L      ++E 
Sbjct: 58  TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI 117

Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
           +       RKV ++ A +G+       P NL  SGG+K+   I +     P + + DE  
Sbjct: 118 K-------RKVTELLALVGLGDKHDSYPSNL--SGGQKQRVAIARALASNPKVLLCDEAT 168

Query: 176 SGLDIDALKIAAQGVNAL-----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           S LD        Q +  L     R    + L+ITH   ++  I  D + V+ NG++I+ G
Sbjct: 169 SALD----PATTQSILELLKEINRRLGLTILLITHEMDVVKRI-CDCVAVISNGELIEQG 223

Query: 231 DYS 233
             S
Sbjct: 224 TVS 226


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 36/225 (16%)

Query: 1   MLEIKNLRA--KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEI 57
           +L++K+LR      D D   +  LN  +   E + I+G +GSGKS  ++ L G       
Sbjct: 12  LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71

Query: 58  TAGDILYKGESILDWSIVE----RASKGIFLAFQYPVEIPGIIM------MQFLKIALNE 107
             G   + G  IL+    E    RA + I + FQ P+      M      M+ L +    
Sbjct: 72  IGGSATFNGREILNLPEKELNKLRAEQ-ISMIFQDPMTSLNPYMRVGEQLMEVLML---- 126

Query: 108 QRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLL 164
             K  ++ E     F   VR + A   + M   ++ + +    FSGG ++   I    L 
Sbjct: 127 -HKGMSKAEA----FEESVRMLDA---VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC 178

Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF----LIITH 205
            P L I DE  + LD+    + AQ +  L    R F    ++ITH
Sbjct: 179 RPKLLIADEPTTALDV---TVQAQIMTLLNELKREFNTAIIMITH 220


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 40/180 (22%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           + + LN  ++    +A++GPNG GKST+  L+SG  + + ++G +              R
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG--ELQPSSGTVF-------------R 568

Query: 78  ASKGIFLAF-QYPVE------IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
           ++K     F Q+ V+       P + MM+       EQ                K+R   
Sbjct: 569 SAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP-EQ----------------KLRAHL 611

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
              G+  ++  +P+    SGG+K      ++   +P + +LDE  + LD+DA++   QG+
Sbjct: 612 GSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670



 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 108 QRKARNEKEL-LIPDFTRKVR--KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL 164
           QR     K L LI  +T + R   I A L    +M  +     FSGG +    + +   +
Sbjct: 303 QRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT-FSGGWRMRIALARALFI 361

Query: 165 EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224
           EP L +LDE  + LD+ A+         L    ++F++++H +  LN +  D +H LH  
Sbjct: 362 EPDLLLLDEPTNHLDLHAVLWLE---TYLLKWPKTFIVVSHAREFLNTVVTDILH-LHGQ 417

Query: 225 KIIK-TGDYSI 234
           K++   GDY  
Sbjct: 418 KLVTYKGDYDT 428


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 45/222 (20%)

Query: 21  GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASK 80
            ++ + +   +V  +GPNG+GKST   +++G+      +G +   GE +L      + + 
Sbjct: 20  EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--LPPDSGSVQVCGEDVLQNPKEVQRNI 77

Query: 81  GI---------------FLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125
           G                +L F     I GI  M+     L ++ +   E   L P+  +K
Sbjct: 78  GYLPEHNPLYLDMYVREYLQF-----IAGIYGMK--GQLLKQRVEEMIELVGLRPEQHKK 130

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
           + ++                   S G ++   + Q  + +P + ILDE  +GLD + L +
Sbjct: 131 IGQL-------------------SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL-V 170

Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227
             + V     +D++ ++ TH  + +  I    I +++ GKI+
Sbjct: 171 EIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI-IINKGKIV 211


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 49/217 (22%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLA 85
            +  +V  I+GPNG GK+T   +LSG    E+     L   E    W  V +  +G  L 
Sbjct: 96  PKEGKVTGILGPNGIGKTTAVKILSG----ELIPN--LGDYEEEPSWDEVLKRFRGTEL- 148

Query: 86  FQYPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPD-FTRKVRKI---TAELGINMDML 140
             Y           F K+   E +     + + LIP  F  KVR++     E G   +++
Sbjct: 149 QNY-----------FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVV 197

Query: 141 KRPLNLG---------FSGGEKKIAEILQMRLL-------EPSLCILDETDSGLDIDALK 184
           +R L L           SGGE      LQ R+        +      DE  S LDI    
Sbjct: 198 ER-LGLENILDRDISELSGGE------LQ-RVAIAAALLRDADFYFFDEPTSYLDIRQRL 249

Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVL 221
             A+ +  L ++ +  L++ H   +L+Y+  D +H+ 
Sbjct: 250 NVARLIREL-AEGKYVLVVEHDLAVLDYLA-DNVHIA 284



 Score = 37.5 bits (88), Expect = 0.004
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 5/33 (15%)

Query: 24  LKVEP-----SEVVAIMGPNGSGKSTLSYLLSG 51
           L+VE       EV+ I+GPNG GK+T + LL+G
Sbjct: 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 18   IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69
            ++RG++ ++ P E V I+G  GSGKSTL  LL+  +  E+  G+I   G  I
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTL--LLTFMRMVEVCGGEIRVNGREI 1374



 Score = 31.3 bits (71), Expect = 0.22
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKST-LSYLLSGHKDYEITAGDIL 63
            ++R +++ V   ++  ++G  GSGKST L  LLS    +EI+ G + 
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS---QFEISEGRVW 718


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
           +E +NL +K    D  +I  L+ K+ P  +V ++GPNG+GKSTL  +++G
Sbjct: 323 IEAENL-SKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370



 Score = 37.6 bits (88), Expect = 0.003
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYE 56
          K+V    EI++ ++L   P   + ++G NG+GKSTL  +++G  K++ 
Sbjct: 12 KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN 59


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
          Family protein. 
          Length = 216

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          M+  + +           +  LN  +   E+V ++G +G+GKST   L+ G +  + T G
Sbjct: 1  MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE--KPTRG 58

Query: 61 DILYKGESI 69
           I + G+ +
Sbjct: 59 KIRFNGQDL 67


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
          Provisional.
          Length = 232

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
          +L VE  E VAI+GP+G+GKSTL  L++G
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAG 47


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.
          This model describes the cyt c biogenesis protein
          encoded by ccmA in bacteria. An exception is, an
          arabidopsis protein. Quite likely this is encoded by an
          organelle. Bacterial c-type cytocromes are located on
          the periplasmic side of the cytoplasmic membrane.
          Several gene products encoded in a locus designated as
          'ccm' are implicated in the transport and assembly of
          the functional cytochrome C. This cluster includes
          genes: ccmA;B;C;D;E;F;G and H. The posttranslational
          pathway includes the transport of heme moiety, the
          secretion of the apoprotein and the covalent attachment
          of the heme with the apoprotein. The proteins ccmA and
          B represent an ABC transporter; ccmC and D participate
          in heme transfer to ccmE, which function as a
          periplasmic heme chaperone. The presence of ccmF, G and
          H is suggested to be obligatory for the final
          functional assembly of cytochrome c.
          Length = 198

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
            +  GL+  +   E + + GPNG GK+TL  +L+G
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 29/218 (13%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IVERA 78
           ++ ++E    VA++G  GSGKSTL    +     + ++G I   G  I   +    +++ 
Sbjct: 26  ISFELEEGSFVALVGHTGSGKSTLMQHFNAL--LKPSSGTITIAGYHITPETGNKNLKKL 83

Query: 79  SKGIFLAFQYPVE------IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
            K + L FQ+P        +   +         +E  +A+            K  K   +
Sbjct: 84  RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED-EAKE-----------KALKWLKK 131

Query: 133 LGINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
           +G++ D++ K P  L  SGG+ +   I  +   EP +  LDE  +GLD +  K   Q   
Sbjct: 132 VGLSEDLISKSPFEL--SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189

Query: 192 ALRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIK 228
             +    + +++TH    +  Y   D + VL +GK+IK
Sbjct: 190 DYQKAGHTVILVTHNMDDVAEY--ADDVLVLEHGKLIK 225


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 22/170 (12%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           +   L +++      AI+GPNG GKSTL   LS  +      G +   GE I  ++  E 
Sbjct: 22  VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS--RLMTPAHGHVWLDGEHIQHYASKEV 79

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-------KVRKIT 130
           A +   LA       PG I +Q L        + R   +   P FTR        V K  
Sbjct: 80  ARRIGLLAQN--ATTPGDITVQEL------VARGRYPHQ---PLFTRWRKEDEEAVTKAM 128

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
              GI   +  + ++   SGG+++ A I  +   E ++ +LDE  + LDI
Sbjct: 129 QATGIT-HLADQSVDT-LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1    MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
            +L +  L      T +  +  L + V P E   ++G NG+GK+T   +L+G  D  +T+G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--DTTVTSG 1994

Query: 61   DILYKGESIL 70
            D    G+SIL
Sbjct: 1995 DATVAGKSIL 2004



 Score = 29.6 bits (66), Expect = 0.71
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69
           LN+    +++ A +G NG+GK+T   +L+G      T+G +L  G+ I
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGL--LPPTSGTVLVGGKDI 994


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
          Provisional.
          Length = 353

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI 69
          T+++  ++L +   ++VA++GP+GSGK+TL  +++G +    T+G I + G  +
Sbjct: 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 52/251 (20%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS-----TLSYLLSGHKDYE 56
           +E++N+    +     ++ G++L ++   V+A++G +GSGKS      L  L +G     
Sbjct: 5   IELRNIA---LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAG---VR 58

Query: 57  ITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI---IMMQFLKIALNEQRKARN 113
            TAG +L  G+ +                   P  + G     +MQ  + A N       
Sbjct: 59  QTAGRVLLDGKPVA------------------PCALRGRKIATIMQNPRSAFNPLHTMHT 100

Query: 114 E-----KELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLE 165
                   L  P     +      +G  ++   R L L     SGG  +   I    L E
Sbjct: 101 HARETCLALGKPADDATLTAALEAVG--LENAARVLKLYPFEMSGGMLQRMMIALALLCE 158

Query: 166 PSLCILDETDSGLDIDA-LKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHV 220
               I DE  + LD+ A  +I     + ++ +    L++TH      RL      D + V
Sbjct: 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARL-----ADDVAV 213

Query: 221 LHNGKIIKTGD 231
           + +G+I++ GD
Sbjct: 214 MSHGRIVEQGD 224


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYKGESILDWSI 74
           ++LK+   +++A +GP+G GKSTL       + L+ G K      G +LY+  +I D  I
Sbjct: 39  VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK----VEGRLLYRDRNIYDSQI 94

Query: 75  VE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAE 132
              +  + + + FQ P   P  I   +  IA   +    +   + L+ D  R+   I  E
Sbjct: 95  NSVKLRRQVGMVFQRPNPFPKSI---YENIAFAPRANGYKGNLDELVEDSLRRA-AIWEE 150

Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
           +    D LK       SGG+++   I +   ++P + ++DE  S LD
Sbjct: 151 V---KDKLKEK-GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193


>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
           L I N+R +        ++ ++L V+  E V ++GP+G GK+TL  +++G +    TAG 
Sbjct: 5   LSIDNIRKRF--GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGT 60

Query: 62  ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           I   G  I      ++   GI   FQ     P + +   +   L  +   R E       
Sbjct: 61  IYQGGRDITRLP-PQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVA----- 112

Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
              +V ++   +G+     K P  L  SGG+++   + +     P L +LDE  S LD
Sbjct: 113 --ERVAELLDLVGLPGSERKYPGQL--SGGQQQRVALARALATSPGLLLLDEPLSALD 166


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 29/220 (13%)

Query: 23  NLKVEPSEVVAIMGPNGSGKSTLSYLLSGH----------KDYEITAGDILYKGESILDW 72
           +L  + ++V  ++G  GSGKST+  L +G            DY I A         +   
Sbjct: 31  SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPAN--------LKKI 82

Query: 73  SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
             V+R  K I L FQ+P E           IA        N++E       +KV ++   
Sbjct: 83  KEVKRLRKEIGLVFQFP-EYQLFQETIEKDIAFGPVNLGENKQEAY-----KKVPELLKL 136

Query: 133 LGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
           + +  D +KR P  L  SGG+K+   +  +  ++ +  +LDE   GLD    +       
Sbjct: 137 VQLPEDYVKRSPFEL--SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 194

Query: 192 AL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
            L +   +  +++TH    +  I  + I V+H GK+I  G
Sbjct: 195 RLNKEYKKRIIMVTHNMDQVLRIADEVI-VMHEGKVISIG 233


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 22/215 (10%)

Query: 18   IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE- 76
            ++ GL+ ++ PSE V I+G  G+GKS++   L   +  E+  G IL  G  I  + +++ 
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIVELERGRILIDGCDISKFGLMDL 1311

Query: 77   RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
            R   GI    Q PV   G +  +F     NE   A   + L        +R+ +  LG++
Sbjct: 1312 RKVLGIIP--QAPVLFSGTV--RFNLDPFNEHNDADLWESLERAHLKDVIRRNS--LGLD 1365

Query: 137  MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI--DALKIAAQGVNALR 194
             ++ +   N  FS G++++  + +  L    + +LDE  + +D+  DAL    Q    +R
Sbjct: 1366 AEVSEAGEN--FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL---IQ--KTIR 1418

Query: 195  SQDRS--FLIITHYQRLLNYIKPDTIHVLHNGKII 227
             + +S   LII H  RL   I  D I VL  G+++
Sbjct: 1419 EEFKSCTMLIIAH--RLNTIIDCDRILVLDAGRVV 1451



 Score = 28.9 bits (65), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTL 45
           +NL V    +VAI+G  G GK++L
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSL 659


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
          Length = 1466

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 143  PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSFL 201
            P     SGG+K+   I +  L EP + +LDE  S LD ++ K+  + +  ++ + D++ +
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413

Query: 202  IITHYQRLLNYIKPDTIHVLHN 223
             I H  R+ +  + D I V +N
Sbjct: 1414 TIAH--RIASIKRSDKIVVFNN 1433



 Score = 37.7 bits (87), Expect = 0.003
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 115 KELLIPDFTRKV-RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
           K++LI DF   +  K    +G N   L        SGG+K+   I +  +  P + ILDE
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKL--------SGGQKQRISIARAIIRNPKILILDE 605

Query: 174 TDSGLDIDALKIAAQGVNALR-SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232
             S LD  +  +  + +N L+ +++R  +II H    + Y   +TI VL N +   T D 
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY--ANTIFVLSNRERGSTVDV 663

Query: 233 SI 234
            I
Sbjct: 664 DI 665



 Score = 33.1 bits (75), Expect = 0.062
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 2   LEIKNLRAKIVDT--DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59
           ++ KN+R    DT  D EI + LN  +   +  A +G +G GKST+  L+   + Y+ T 
Sbjct: 383 IQFKNVRFH-YDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI--ERLYDPTE 439

Query: 60  GDIL 63
           GDI+
Sbjct: 440 GDII 443



 Score = 27.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 18   IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49
            I + L    +  +  AI+G  GSGKST+  LL
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
          Provisional.
          Length = 255

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          ML+I +L A         +  +NL +E  E++ ++GP+G GK+TL  L++G   Y+   G
Sbjct: 1  MLQISHLYADY--GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HG 56

Query: 61 DILYKGESI 69
           I   G+ +
Sbjct: 57 SITLDGKPV 65


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
          subunit; Provisional.
          Length = 262

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
          +  ++L +   E+VA++GP+GSGKSTL   LSG
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52


>gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase.
          Length = 468

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 30 EVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKGESILDWSIVERASKGI 82
          +VV +MGP GSGKS L+  L+ H   EI   D   +Y G  +L   +     KG+
Sbjct: 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGV 77


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 38/241 (15%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71
           D   ++G+++ +    V A++GP+G GKST    L+   D    A   G +   G+ I  
Sbjct: 57  DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116

Query: 72  --WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
              ++VE   K + + FQ P   P  I      I+   ++       LL     R  +  
Sbjct: 117 DGVNLVE-LRKRVGMVFQSPNPFPKSIREN---ISYGPRKHGDINTGLLARLLGRDDKDA 172

Query: 130 TAELGINMDMLKRPLN----------------LGFSGGEKKIAEILQMRLLEPSLCILDE 173
             EL      ++R L                 LG SGG+++   I +   ++P + ++DE
Sbjct: 173 EDEL------VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDE 226

Query: 174 TDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
             S LD     IA   +  L    +++ + +++TH  +    I   T   L  G++++  
Sbjct: 227 PASALD----PIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282

Query: 231 D 231
           D
Sbjct: 283 D 283


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 38/201 (18%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYEITAGDILYKGESILDW 72
           +  +   L+  V+  E + + G NG+GK+TL  +L+G  H +    +G I   G++    
Sbjct: 23  EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE----SGQIQIDGKT---- 74

Query: 73  SIVERASKGIFLAFQYPVEIPGIIM-------MQFLKIALNEQRKARNEKELLIPDFTRK 125
               R  +  F+A  Y   +PG+         + FL   L+ +R  +     L       
Sbjct: 75  --ATRGDRSRFMA--YLGHLPGLKADLSTLENLHFLC-GLHGRRAKQMPGSAL------- 122

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
                  L    D L R L    S G+KK   + ++ L    L +LDE  + LD++ + +
Sbjct: 123 ---AIVGLAGYEDTLVRQL----SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175

Query: 186 AAQGVNA-LRSQDRSFLIITH 205
             + ++A LR    + L+ TH
Sbjct: 176 VNRMISAHLRGGGAA-LVTTH 195


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 37.8 bits (89), Expect = 0.003
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
           I  L+  + P  +V I+GPNG+GKSTL  +++G
Sbjct: 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372



 Score = 36.3 bits (85), Expect = 0.007
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          K+V    +I++ ++L   P   + ++G NG+GKSTL
Sbjct: 14 KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTL 49


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD 71
           ++L++   ++V I+G NG GKSTL+ L  G   Y    G+IL  G ++  
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--YIPQEGEILLDGAAVSA 408


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 36.9 bits (85), Expect = 0.005
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 20/197 (10%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL------SYLLSGHKDYEITAGDILY--KGESIL 70
           ++ +N+ V   +V A++GP+G GKST        + L     YE   G+I+      +IL
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88

Query: 71  DWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
              +  +E   + I + FQ P   P  I   F  +A   + +    + +L       +R 
Sbjct: 89  SPEVDPIEVRMR-ISMVFQKPNPFPKSI---FENVAYGLRIRGVKRRSILEERVENALRN 144

Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
             A      D L   L    SGG+++   I +    +P + + DE  S LD  A     +
Sbjct: 145 -AALWDEVKDRLGD-LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202

Query: 189 GVNALRSQDRSFLIITH 205
            ++ L+++  + LI+TH
Sbjct: 203 LISDLKNK-VTILIVTH 218


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 36.7 bits (85), Expect = 0.005
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 34/202 (16%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDWSI- 74
           ++ + L +  +++ A +GP+G GKST+    +   D        G + + G+++    + 
Sbjct: 26  VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85

Query: 75  -VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR------NEKELLIPDFTRKVR 127
            VE   + I + FQ P   P  I   +  IA      AR      +  EL+     R +R
Sbjct: 86  PVEVRRR-IGMVFQKPNPFPKSI---YDNIAYG----ARINGYKGDMDELV----ERSLR 133

Query: 128 KITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDAL 183
           +  A L    D +K  L    L  SGG+++   I +   ++P + ++DE  S LD I  L
Sbjct: 134 Q--AAL---WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188

Query: 184 KIAAQGVNALRSQDRSFLIITH 205
           +I  + ++ L+ Q  + +I+TH
Sbjct: 189 RI-EELMHELKEQ-YTIIIVTH 208


>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
            bacterial type.  SMC (structural maintenance of
            chromosomes) proteins bind DNA and act in organizing and
            segregating chromosomes for partition. SMC proteins are
            found in bacteria, archaea, and eukaryotes. This family
            represents the SMC protein of most bacteria. The smc gene
            is often associated with scpB (TIGR00281) and scpA genes,
            where scp stands for segregation and condensation
            protein. SMC was shown (in Caulobacter crescentus) to be
            induced early in S phase but present and bound to DNA
            throughout the cell cycle.
          Length = 1179

 Score = 36.6 bits (85), Expect = 0.006
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 22/78 (28%)

Query: 141  KRPLNLG-FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALR- 194
            K+  NL   SGGEK    +A +  +  ++P+  CILDE D+ LD DA        N  R 
Sbjct: 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD-DA--------NVERF 1132

Query: 195  -------SQDRSFLIITH 205
                   S++  F++ITH
Sbjct: 1133 ANLLKEFSKNTQFIVITH 1150



 Score = 30.4 bits (69), Expect = 0.48
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 28 PSEVVAIMGPNGSGKS 43
             +  I+GPNG GKS
Sbjct: 22 DKGITGIVGPNGCGKS 37


>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein.  Function of MutS2 is
           unknown. It should not be considered a DNA mismatch
           repair protein. It is likely a DNA mismatch binding
           protein of unknown cellular function.
          Length = 771

 Score = 36.3 bits (84), Expect = 0.007
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDID---ALKIAAQGVNALRSQDRSFLIIT 204
           FSG  K I+ IL  +  E SL + DE  +G D D   AL I+   +  L  Q+   LI T
Sbjct: 386 FSGHMKNISAILS-KTTENSLVLFDELGAGTDPDEGSALAISI--LEYLLKQNAQVLITT 442

Query: 205 HYQRL 209
           HY+ L
Sbjct: 443 HYKEL 447



 Score = 27.9 bits (62), Expect = 2.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS-TLSYLLS 50
           + ++N R  ++     +   LNLK E   V+AI GPN  GK+ TL  L  
Sbjct: 296 IILENARHPLLKEPKVVPFTLNLKFEKR-VLAITGPNTGGKTVTLKTLGL 344


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 36.3 bits (84), Expect = 0.007
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 36/207 (17%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA----GDILYKGESIL 70
             E ++ +   +   +V A++GP+G GKST+   L+   D  I      G +L+ G  + 
Sbjct: 25  TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL-IEGCSLKGRVLFDGTDLY 83

Query: 71  DWSI--VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR------NEKELLIPDF 122
           D  +  VE   + I + FQ P   P  I   +  IA      AR      +  EL+    
Sbjct: 84  DPRVDPVE-VRRRIGMVFQQPNPFPKSI---YENIAFG----ARINGYTGDMDELV---- 131

Query: 123 TRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
            R +RK         D  K  LN      SGG+++   I +   +EP + ++DE  S LD
Sbjct: 132 ERSLRKAAV-----WDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186

Query: 180 -IDALKIAAQGVNALRSQDRSFLIITH 205
            I  LKI  + ++ L+ ++ + +I+TH
Sbjct: 187 PISTLKI-EETMHELK-KNFTIVIVTH 211


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
            regulator (CFTR).  The model describes the cystis
            fibrosis transmembrane conductor regulator (CFTR) in
            eukaryotes. The principal role of this protein is
            chloride ion conductance. The protein is predicted to
            consist of 12 transmembrane domains. Mutations or lesions
            in the genetic loci have been linked to the aetiology of
            asthma, bronchiectasis, chronic obstructive pulmonary
            disease etc. Disease-causing mutations have been studied
            by 36Cl efflux assays in vitro cell cultures and
            electrophysiology, all of which point to the impairment
            of chloride channel stability and not the biosynthetic
            processing per se.
          Length = 1490

 Score = 36.0 bits (83), Expect = 0.008
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 2    LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
            ++++ L AK  +    +++ L+  VE  + V ++G  GSGKSTL
Sbjct: 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL 1261



 Score = 35.7 bits (82), Expect = 0.011
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 36/224 (16%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
           T +++ ++ K+E  +++A+ G  GSGKS+L  ++ G  + E + G I + G         
Sbjct: 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG--ELEPSEGKIKHSGR-------- 488

Query: 76  ERASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEK----ELLIPDFTRKVRKIT 130
                 I  + Q    +PG I    +  ++ +E R     K    E  I  F  K + + 
Sbjct: 489 ------ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542

Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK-IAAQG 189
            E GI +           SGG++    + +    +  L +LD   + LD+   K I    
Sbjct: 543 GEGGITL-----------SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESC 591

Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYS 233
           +  L S     L+ +  + L    K D I +LH G     G +S
Sbjct: 592 LCKLMSNKTRILVTSKLEHLK---KADKILLLHEGVCYFYGTFS 632


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 36.0 bits (84), Expect = 0.009
 Identities = 56/204 (27%), Positives = 84/204 (41%), Gaps = 67/204 (32%)

Query: 1   MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
           MLE+ N + ++ D    +    NL +    + AI G +G+GK++L   +SG     +T  
Sbjct: 1   MLEL-NFKQQLGDLCLTV----NLTLPAQGITAIFGRSGAGKTSLINAISG-----LTRP 50

Query: 61  DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-------ARN 113
               KG  +L+  ++  A KGI L                      E+R+       AR 
Sbjct: 51  Q---KGRIVLNGRVLFDAEKGICLP--------------------PEKRRIGYVFQDAR- 86

Query: 114 EKELLIPDFTRKVR----------------KITAELGINMDMLKR-PLNLGFSGGEKKIA 156
               L P +   VR                KI A LGI   +L R P +L  SGGEK+  
Sbjct: 87  ----LFPHYK--VRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSL--SGGEKQRV 137

Query: 157 EILQMRLLEPSLCILDETDSGLDI 180
            I +  L  P L ++DE  + LD+
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDL 161


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 36.1 bits (83), Expect = 0.009
 Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 21/200 (10%)

Query: 16  TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILDW 72
              ++ +++    + V AI+GP+G GKST+   ++   D   +A   G IL     I D 
Sbjct: 17  NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76

Query: 73  SIVERA-SKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVR-- 127
            +   +  + + + FQ P   P + +         LN  R  R+E + ++    ++V   
Sbjct: 77  GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALW 135

Query: 128 -KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKI 185
            ++   L  N   L        SGG+++   I +   ++P + ++DE  S LD I  LKI
Sbjct: 136 DEVKDRLKSNAMEL--------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187

Query: 186 AAQGVNALRSQDRSFLIITH 205
             + +  L+ +  + +I+TH
Sbjct: 188 -EELIEELKEK-YTIIIVTH 205


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding
          subunit; Provisional.
          Length = 549

 Score = 36.0 bits (83), Expect = 0.009
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
          ++ +V   E+V I+G NGSGKSTLS L++G
Sbjct: 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 35.8 bits (83), Expect = 0.010
 Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 22/213 (10%)

Query: 2   LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY----EI 57
           LE++NL   +   D + +  +++++  + V A +GP+G GKSTL    +   D      I
Sbjct: 26  LEVRNL--NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83

Query: 58  TAGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
             G+I   G++I D  + V    + + + FQ P   P  I   +  +    + +  N + 
Sbjct: 84  E-GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSI---YENVVYGLRLQGINNRR 139

Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLN---LGFSGGEKKIAEILQMRLLEPSLCILDE 173
           +L     R +R   A L    D +K  L+    G SGG+++   I +   +EP + +LDE
Sbjct: 140 VLDEAVERSLRG--AAL---WDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194

Query: 174 TDSGLD-IDALKIAAQGVNALRSQDRSFLIITH 205
             S LD I  LKI  + +  L+S+  + +I+TH
Sbjct: 195 PTSALDPISTLKI-EELITELKSK-YTIVIVTH 225


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score = 36.1 bits (83), Expect = 0.010
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 141 KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF 200
           K P++L  SGG+++   I +   +EP + + DE  S LD + +    + +  L  + ++ 
Sbjct: 148 KYPVHL--SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205

Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
           +++TH      ++    I  LH GKI + G 
Sbjct: 206 VVVTHEMGFARHVSSHVI-FLHQGKIEEEGA 235



 Score = 33.8 bits (77), Expect = 0.039
 Identities = 12/29 (41%), Positives = 23/29 (79%)

Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          E+++G++L+    +V++I+G +GSGKST 
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTF 47


>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 924

 Score = 35.8 bits (83), Expect = 0.010
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 20/91 (21%)

Query: 149 SGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205
           SGGE    K+A+ L  R    +L ILDE  +GL  D +K   + +  L  Q  + ++I  
Sbjct: 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE- 888

Query: 206 YQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
                           HN  +IKT DY I L
Sbjct: 889 ----------------HNLDVIKTADYIIDL 903



 Score = 28.8 bits (65), Expect = 1.2
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 8/38 (21%)

Query: 18 IIRGL---NLK---VE--PSEVVAIMGPNGSGKSTLSY 47
          I+RG    NLK   VE    ++V I G +GSGKS+L++
Sbjct: 3  IVRGAREHNLKNIDVEIPRDKLVVITGLSGSGKSSLAF 40



 Score = 28.1 bits (63), Expect = 2.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL 45
           ++ + + +       I G +GSGKSTL
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTL 649


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 35.5 bits (82), Expect = 0.011
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 30/175 (17%)

Query: 17  EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS--- 73
           + I  +N + E  +  AI+G  GSGKSTL   ++     + T G +     +I   +   
Sbjct: 21  QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--LKPTTGTVTVDDITITHKTKDK 78

Query: 74  IVERASKGIFLAFQYP--------VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125
            +    K I + FQ+P        VE   I   +  K+ L ++ K    + L+   F+R 
Sbjct: 79  YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNL-DEVKNYAHRLLMDLGFSRD 137

Query: 126 VRKITAELGINMDMLKRPLNLGFSGGE-KKIAEILQMRLLEPSLCILDETDSGLD 179
           V            M + P  +  SGG+ +KIA I+ +  + P + +LDE  +GLD
Sbjct: 138 V------------MSQSPFQM--SGGQMRKIA-IVSILAMNPDIIVLDEPTAGLD 177


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 35.5 bits (82), Expect = 0.013
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 24/227 (10%)

Query: 15  DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA---GDILYKGESILD 71
           D + +  +++ +  ++V A++GP+G GKST    ++   D    A   G++ ++G+++ D
Sbjct: 51  DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110

Query: 72  WSIVERA-SKGIFLAFQYPVEIPGII---MMQFLKIALNEQRKARNEKELLIPDFTRKVR 127
             +   A  + I + FQ P   P  I   +   LKI        +     +       +R
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI--------QGYDGDIDERVEESLR 162

Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
           +      +   +    L+L  SGG+++   I +    +P + ++DE  S LD     +A 
Sbjct: 163 RAALWDEVKDQLDSSGLDL--SGGQQQRLCIARAIAPDPEVILMDEPASALD----PVAT 216

Query: 188 QGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
             +  L    +++ + +I+TH  +    I   T   L  G++++  D
Sbjct: 217 SKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 35.2 bits (81), Expect = 0.015
 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 23/117 (19%)

Query: 128 KITA--ELGINMDMLKRPLNLGFSGGE---KKIAEILQMRLLEPSLCILDETDSGLDIDA 182
           KI A   LG++   L RPL+   SGGE    K+A  L     +P+L +LDE  +GL    
Sbjct: 789 KIHALCSLGLDYLPLGRPLS-SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847

Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLE 239
           +K     + +L  Q  + +II                  HN  ++K  DY + L  E
Sbjct: 848 IKALIYVLQSLTHQGHTVVIIE-----------------HNMHVVKVADYVLELGPE 887



 Score = 31.7 bits (72), Expect = 0.16
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 133  LGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
            LG N+  L        S  EK   KIA+ L +    P+L +LDE  + LD          
Sbjct: 1693 LGQNLSSL--------SLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744

Query: 190  VNALRSQDRSFLIITHYQRLLNY 212
            +  L S   S + I H   LL  
Sbjct: 1745 LRTLVSLGHSVIYIDHDPALLKQ 1767



 Score = 27.9 bits (62), Expect = 2.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 19 IRGL-NLKVE--PSEVVAIMGPNGSGKSTLSY 47
          +R L N+ +E  P E+V + G +GSGKS+L++
Sbjct: 13 VRNLKNISIEFCPREIVLLTGVSGSGKSSLAF 44


>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
          Length = 180

 Score = 35.2 bits (82), Expect = 0.017
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
          ++ I GP GSGK+T++ LL+     + ++AG+I
Sbjct: 2  IITISGPPGSGKTTVARLLAEKLGLKHVSAGEI 34


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding
          subunit; Provisional.
          Length = 257

 Score = 35.0 bits (81), Expect = 0.020
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
           ++  L+L +   + VA++G +G GKSTL  LL+G
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
          Provisional.
          Length = 343

 Score = 34.8 bits (81), Expect = 0.023
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 1  MLEIKNLRAKIVDTDTEII---RGLNLKVEPSEVVAIMGPNGSGKSTL 45
          M+E+KN+  K+       I     ++L +   E+  ++G +G+GKSTL
Sbjct: 1  MIELKNIS-KVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTL 47


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 34.2 bits (79), Expect = 0.032
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
          L +E +E V ++G NG+GKSTL  +L+G
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNG 51



 Score = 31.8 bits (73), Expect = 0.15
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 10/60 (16%)

Query: 149 SGGEKKIAEILQMRL-LEPS-LCILDETDSGLDIDALKI------AAQGVNALRSQDRSF 200
           SGGE+    +L  RL L+PS L ILDE  + LD++ L++      + QG   L S DR F
Sbjct: 442 SGGERN--RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQF 499



 Score = 30.7 bits (70), Expect = 0.38
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 3   EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
           E++N+  +I     ++++  + +V+  + +A++GPNG GK+TL  L+ G
Sbjct: 321 EMENVNYQI--DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 33.7 bits (77), Expect = 0.047
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 14  TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TAGDILYKG 66
           T   I++  +  ++PS +  ++GP  SGK+TL   L+G  D  +  +G+I Y G
Sbjct: 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG 229



 Score = 33.3 bits (76), Expect = 0.057
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 11  IVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG 66
           + +   +++R +     P  + A+MG +G+GK+TL  +L+G K      GDI   G
Sbjct: 888 VTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
          Provisional.
          Length = 195

 Score = 33.3 bits (76), Expect = 0.060
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
          ML +  L+  I   +   +  L++   PS +  I G NG GKS+L  +++G    + ++G
Sbjct: 1  MLSLHQLQFNIEQKN---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM--QPSSG 55

Query: 61 DILYKGESI 69
          +I YK  +I
Sbjct: 56 NIYYKNCNI 64


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
            (MRP).  This model describes multi drug
            resistance-associated protein (MRP) in eukaryotes. The
            multidrug resistance-associated protein is an integral
            membrane protein that causes multidrug resistance when
            overexpressed in mammalian cells. It belongs to ABC
            transporter superfamily. The protein topology and
            function was experimentally demonstrated by epitope
            tagging and immunofluorescence. Insertion of tags in the
            critical regions associated with drug efflux, abrogated
            its function. The C-terminal domain seem to highly
            conserved.
          Length = 1522

 Score = 33.0 bits (75), Expect = 0.070
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 18   IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
            ++R +N+ +   E V I+G  G+GKS+L+  L   +  E   G+I+  G +I    + + 
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL--FRINESAEGEIIIDGLNIAKIGLHDL 1358

Query: 78   ASKGIFLAFQYPVEIPGIIMM 98
              K I +  Q PV   G + M
Sbjct: 1359 RFK-ITIIPQDPVLFSGSLRM 1378



 Score = 28.4 bits (63), Expect = 1.6
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 39/238 (16%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHKDYEITAGDILYKGESILDWSIVER 77
           + G+   +    +VA++G  G GKS+L S LL+   + +   G +  KG      S+   
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLA---EMDKVEGHVHMKG------SVA-- 702

Query: 78  ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKELLIPDFTRKVRKITAELGIN 136
                ++  Q  ++   +        ALNE+  +   E   L+PD          E+G  
Sbjct: 703 -----YVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-- 755

Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK------IAAQGV 190
               ++ +NL  SGG+K+   + +       + + D+  S +D    K      I  +GV
Sbjct: 756 ----EKGVNL--SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809

Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
             L+++ R  +++TH    L  +  D I V+  GKI + G Y   L   +  +AE ++
Sbjct: 810 --LKNKTR--ILVTHGISYLPQV--DVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLR 860


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
          activities.  AAA - ATPases associated with a variety of
          cellular activities. This profile/alignment only
          detects a fraction of this vast family. The poorly
          conserved N-terminal helix is missing from the
          alignment.
          Length = 148

 Score = 33.1 bits (75), Expect = 0.071
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGH 52
          P EV+ I+GP GSGK+TL+  L+  
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARE 25


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score = 32.9 bits (75), Expect = 0.074
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 38/179 (21%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDWSIVE 76
           ++G+   + P E+  + G +G+GKSTL  L+ G +    +AG I + G  I  L    V 
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNREVP 75

Query: 77  RASKGIFLAFQ----------YP-VEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125
              + I + FQ          Y  V IP II              A  +      D  R+
Sbjct: 76  FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA------------GASGD------DIRRR 117

Query: 126 VRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDAL 183
           V     ++G+ +D  K  P+ L  SGGE++   I +  + +P++ + DE    LD DAL
Sbjct: 118 VSAALDKVGL-LDKAKNFPIQL--SGGEQQRVGIARAVVNKPAVLLADEPTGNLD-DAL 172


>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
          Length = 225

 Score = 32.8 bits (76), Expect = 0.081
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52
          V+AI GP GSGK T++ +L+  
Sbjct: 6  VIAIDGPAGSGKGTVAKILAKK 27


>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
          domain-containing protein; Reviewed.
          Length = 229

 Score = 32.6 bits (75), Expect = 0.089
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 1  MLEIKNLRAKIVDTDTEIIRGLNLKVEPSE--VVAIMGPNGSGKSTLS 46
            EI+ +   ++       R   L+ EP    +V I GP G+GKSTL+
Sbjct: 9  DEEIEAVHKPLLR------RLAALQAEPQRRTIVGIAGPPGAGKSTLA 50


>gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA).  Catalyzes
          the first step in the modification of an adenosine near
          the anticodon to 2-methylthio-N6-isopentyladenosine.
          Length = 287

 Score = 32.0 bits (73), Expect = 0.14
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL--YKGESI 69
          V+ IMGP   GKS L+  L+   + EI + D +  YKG  I
Sbjct: 1  VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDI 41


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 31.5 bits (71), Expect = 0.20
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 34/202 (16%)

Query: 19  IRGLNLKVEPSEVVAIMGPNGSGKSTL------------SYLLSGHKDYEITAGDILYKG 66
           +R  ++ +  +E+   +GP+G GKST+             +   GH  +     D+  KG
Sbjct: 24  VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF--LGQDVYGKG 81

Query: 67  ESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126
              +D  +V R    I + FQ P       M  F  +A    R  R + +L   D  +  
Sbjct: 82  ---VDPVVVRRY---IGMVFQQPNPFS---MSIFDNVAFG-LRLNRYKGDL--GDRVKHA 129

Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
            +  A      D LK    L  SGG+++   I +    EP + +LDE  S LD     IA
Sbjct: 130 LQGAALWDEVKDKLKVS-GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD----PIA 184

Query: 187 AQGVNALR---SQDRSFLIITH 205
            + V  L     +D +  ++TH
Sbjct: 185 TRRVEELMVELKKDYTIALVTH 206


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 31.6 bits (72), Expect = 0.21
 Identities = 11/28 (39%), Positives = 24/28 (85%)

Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          ++  ++L+++P +++ ++GPNG+GKSTL
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTL 46


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
          subunit; Provisional.
          Length = 264

 Score = 31.3 bits (71), Expect = 0.21
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGE 67
          ++LK    +V+ ++G NGSGKSTLS ++ G      T G +   GE
Sbjct: 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGG--SLSPTVGKVDRNGE 86


>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
          Length = 334

 Score = 31.3 bits (71), Expect = 0.22
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 30 EVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL--YKGESI 69
          +VV IMG  GSGKS LS  L+     EI   D +  Y G  I
Sbjct: 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKI 85


>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative.  Proteins
          in this family are believed to be cytidylate kinase.
          Members of this family are found in the archaea and in
          spirochaetes, and differ considerably from the common
          bacterial form of cytidylate kinase described by
          TIGR00017.
          Length = 171

 Score = 31.2 bits (71), Expect = 0.22
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
          ++ I GP GSGK+T++ +L+     + I+AGDI
Sbjct: 2  IITISGPPGSGKTTVAKILAEKLSLKLISAGDI 34


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
          Provisional.
          Length = 242

 Score = 31.1 bits (71), Expect = 0.24
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 22 LNLKVEPSEVVAIMGPNGSGKSTL 45
          + L     E + ++GP+G+GKS+L
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSL 44



 Score = 30.8 bits (70), Expect = 0.36
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 27/103 (26%)

Query: 143 PLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR----- 194
           PL+L  SGG+++   IA  L M   EP + + DE  + LD +   I AQ V+ +R     
Sbjct: 139 PLHL--SGGQQQRVAIARALMM---EPQVLLFDEPTAALDPE---ITAQIVSIIRELAET 190

Query: 195 --SQDRSFLIITHYQRLLNYIKPDTIHVLH--NGKIIKTGDYS 233
             +Q    +I+TH    +   +     V++  NG I++ GD S
Sbjct: 191 GITQ----VIVTHE---VEVARKTASRVVYMENGHIVEQGDAS 226


>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
          Length = 171

 Score = 31.2 bits (71), Expect = 0.25
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEI 57
          +AI+G +GSGKSTL+  LS H +  +
Sbjct: 3  IAIIGYSGSGKSTLARKLSQHYNCPV 28


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
          protein.  Members of this protein family are the
          ATP-binding subunit of a three-protein transporter.
          This family belongs, more broadly, to the family of
          proline and glycine-betaine transporters, but members
          have been identified by direct characterization and by
          bioinformatic means as choline transporters. Many
          species have several closely-related members of this
          family, probably with variable abilities to act
          additionally on related quaternary amines.
          Length = 382

 Score = 31.3 bits (71), Expect = 0.28
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTL 45
            +L +E  E+  +MG +GSGKS+L
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSL 66


>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
          Length = 818

 Score = 30.6 bits (69), Expect = 0.39
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 22  LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH-KDYE---ITAGDILYKGESIL 70
           LNL V+      I GP GSGKSTL  L++   + Y    I A D   KG S+L
Sbjct: 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFD---KGRSML 498


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 30.5 bits (69), Expect = 0.48
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 18  IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
           +I  L+ +V     + I GPNG GKS+L  +L  
Sbjct: 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500


>gnl|CDD|162313 TIGR01351, adk, adenylate kinases.  Adenylate kinase (EC 2.7.4.3)
          converts ATP + AMP to ADP + ADP, that is, uses ATP as a
          phosphate donor for AMP. Most members of this family
          are known or believed to be adenylate kinase. However,
          some members accept other nucleotide triphosphates as
          donors, may be unable to use ATP, and may fail to
          complement adenylate kinase mutants. An example of a
          nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
          is a GTP:AMP phosphotransferase. This family is
          designated subfamily rather than equivalog for this
          reason.
          Length = 210

 Score = 30.3 bits (69), Expect = 0.50
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 32 VAIMGPNGSGKSTLSYLLSG-HKDYEITAGDIL 63
          + ++GP GSGK T +  ++  +    I+ GD+L
Sbjct: 2  LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLL 34


>gnl|CDD|178042 PLN02422, PLN02422, dephospho-CoA kinase.
          Length = 232

 Score = 29.7 bits (67), Expect = 0.69
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKG 66
          VV + G   SGKST+S L         D +  A D+L KG
Sbjct: 3  VVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKG 42


>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
          Length = 244

 Score = 29.5 bits (66), Expect = 0.88
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 12 VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLS 46
          VD  TE++R +    +P + + ++GP GSGK T S
Sbjct: 14 VDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQS 48


>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase.  This family consists of
          cytidylate kinase, which catalyzes the phosphorylation
          of cytidine 5-monophosphate (dCMP) to cytidine 5
          -diphosphate (dCDP) in the presence of ATP or GTP. UMP
          and dCMP can also act as acceptors.
          Length = 217

 Score = 28.9 bits (65), Expect = 1.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK 65
          ++AI GP+G+GKST++  ++    Y       +Y+
Sbjct: 4  IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYR 38


>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
          Length = 484

 Score = 29.2 bits (66), Expect = 1.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 8/30 (26%)

Query: 23  NLKVEPSE--------VVAIMGPNGSGKST 44
           NL V  SE        V A+MGP G GK+T
Sbjct: 242 NLPVLDSEDALLDRGGVFALMGPTGVGKTT 271


>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
           VirB4 family.  Type IV secretion systems are found in
           Gram-negative pathogens. They export proteins, DNA, or
           complexes in different systems and are related to
           plasmid conjugation systems. This model represents
           related ATPases that include VirB4 in Agrobacterium
           tumefaciens (DNA export) CagE in Helicobacter pylori
           (protein export) and plasmid TraB (conjugation).
          Length = 785

 Score = 29.2 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)

Query: 22  LNLKVEPSEVV---AIMGPNGSGKSTL-SYLLS 50
            N  V  ++V+    I GP GSGK+TL ++LL+
Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLA 456


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 29.1 bits (65), Expect = 1.2
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 18/176 (10%)

Query: 36  GPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGI 95
           G NG+GK+TL  L++G        G+IL++ +SI    +     +  F+  +  +  P +
Sbjct: 34  GSNGAGKTTLLKLIAGL--LNPEKGEILFERQSI-KKDLCTYQKQLCFVGHRSGIN-PYL 89

Query: 96  IMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKI 155
            + +     ++    A    EL         R  + E      ++  P  L  S G+K+ 
Sbjct: 90  TLRENCLYDIHFSPGAVGITEL--------CRLFSLE-----HLIDYPCGL-LSSGQKRQ 135

Query: 156 AEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLN 211
             +L++ + +  L +LDE    LD  +L      +   R++  + L+ +H    LN
Sbjct: 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191


>gnl|CDD|180564 PRK06446, PRK06446, hypothetical protein; Provisional.
          Length = 436

 Score = 28.6 bits (64), Expect = 1.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 114 EKELLIPDFTRKVRKITAE-------LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEP 166
           E  +LIP F   VR++T E         I+++ L++   LGF   +    E +   LL  
Sbjct: 221 EGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRK--ALGFKELKYSDREKIAEALLTE 278

Query: 167 SLCILDETDSG 177
             C +D   SG
Sbjct: 279 PTCNIDGFYSG 289


>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
          Length = 356

 Score = 28.7 bits (65), Expect = 1.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 26  VEPSEVVAIMGPNGSGKSTL 45
           +   + VA++G +G GKSTL
Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211


>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
          Length = 226

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 28 PSEVVAIMGPNGSGKSTLS 46
          PS VV + GP GSGK+ L+
Sbjct: 43 PSPVVVLAGPVGSGKTHLA 61


>gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
          glucokinase family.  This model represents a subfamily
          of proteins that includes thermoresistant and
          thermosensitve isozymes of gluconate kinase
          (gluconokinase) in E. coli and other related proteins;
          members of this family are often named by similarity to
          the thermostable isozyme. These proteins show homology
          to shikimate kinases and adenylate kinases but not to
          gluconate kinases from the FGGY family of carbohydrate
          kinases.
          Length = 163

 Score = 28.5 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 34 IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84
          +MG  GSGKST++  L+     +   GD L+   +I      E+ S GI L
Sbjct: 3  LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI------EKMSAGIPL 47


>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
          Length = 880

 Score = 28.5 bits (64), Expect = 1.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 10/44 (22%)

Query: 2  LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
          L+IKN R+    +  E   G+NL         I+G NGSGKS++
Sbjct: 6  LKIKNFRSH-KSSVVEFDDGINL---------IIGQNGSGKSSI 39


>gnl|CDD|178433 PLN02840, PLN02840, tRNA dimethylallyltransferase.
          Length = 421

 Score = 28.2 bits (63), Expect = 1.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKG 66
          K +  +V+ I GP G+GKS L+  L+   + EI + D   +Y+G
Sbjct: 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRG 60


>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
          Length = 211

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 35 MGPNGSGKSTLSYLLSGH-KDYEITAGDIL 63
          +GP GSGK T++ +LS     Y I+ GD+ 
Sbjct: 6  LGPPGSGKGTIAKILSNELNYYHISTGDLF 35


>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
           adenylyltransferase, NadR type.  E. coli NadR has also
           been found to regulate the import of its substrate,
           nicotinamide ribonucleotide, but it is not known if the
           other members of this model share that activity.
          Length = 325

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 29  SEVVAIMGPNGSGKSTL 45
            + VAI+G   +GKSTL
Sbjct: 162 VKTVAILGGESTGKSTL 178


>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
          Reviewed.
          Length = 712

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDY 55
          +VAI GP G GKS++S  L+ +  Y
Sbjct: 3  IVAIDGPAGVGKSSVSRALAQYLGY 27


>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
           Provisional.
          Length = 559

 Score = 28.0 bits (62), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 15/45 (33%)

Query: 15  DTEIIRGLNL------------KVEPSE---VVAIMGPNGSGKST 44
           DTE+ RG  L             V+P E   V+A++GP G+GK+T
Sbjct: 321 DTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTT 365


>gnl|CDD|178856 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
          transferase; Reviewed.
          Length = 307

 Score = 27.8 bits (63), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 31 VVAIMGPNGSGKSTLS 46
          V+ I+GP  SGK+ L+
Sbjct: 6  VIVIVGPTASGKTALA 21


>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
          Length = 361

 Score = 27.8 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%)

Query: 23 NLKVEPSE-VVAIMGPNGSGKSTL----SYL--LSGHK 53
           L +E S  V  ++G NG GK+ L      L     H+
Sbjct: 16 ELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHR 53


>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
           Provisional.
          Length = 512

 Score = 27.9 bits (63), Expect = 2.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 31  VVAIMGPNGSGKST 44
           ++AI GP G+GKST
Sbjct: 286 IIAIDGPAGAGKST 299


>gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional.
          Length = 469

 Score = 27.8 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 15  DTEIIR------GLNLKVEPSE--VVAIMGPNGSGKSTLSYLLSG-HKDYEITA 59
           D E+IR      G  L  +  E  +V + G  G+GKS    +L+G   DY  TA
Sbjct: 183 DDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGDYATTA 236


>gnl|CDD|163456 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
           family.  Members of this protein family are predicted
           ATP-binding proteins apparently associated with DNA
           conjugal transfer. Members are found both in plasmids
           and in bacterial chromosomal regions that appear to
           derive from integrative elements such as conjugative
           transposons. More distant homologs, outside the scope of
           this family, include type IV secretion/conjugal transfer
           proteins such as TraC, VirB4 and TrsE. The granularity
           of this protein family definition is chosen so as to
           represent one distinctive clade and act as a marker
           through which to define and recognize the class of
           mobile element it serves.
          Length = 893

 Score = 27.7 bits (62), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)

Query: 34  IMGPNGSGKS-TLSYLLS 50
           I+GP G+GKS TL+ LL 
Sbjct: 480 ILGPTGAGKSATLTNLLM 497


>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
          Length = 413

 Score = 27.4 bits (62), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 36 GPNGSGKSTLSYLLSGHKDYE 56
          GP G+GK+TL+ +++G  D  
Sbjct: 43 GPPGTGKTTLARIIAGATDAP 63


>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
          Length = 943

 Score = 27.3 bits (62), Expect = 3.5
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 13/35 (37%)

Query: 32  VAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG 66
             + G +GSGKSTL               + LYK 
Sbjct: 638 TCVTGVSGSGKSTLIN-------------ETLYKA 659


>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
          protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
          Members of this family resemble PhnN of phosphonate
          utilization operons, where different such operons
          confer the ability to use somewhat different profiles
          of C-P bond-containing compounds (see PubMed:15231805),
          including phosphites as well as phosphonates. PhnN in
          E. coli shows considerable homology to guanylate
          kinases (EC 2.7.4.8), and has actually been shown to
          act as a ribose 1,5-bisphosphokinase (PRPP forming).
          This suggests an analogous kinase reaction for
          phosphonate metabolism, converting
          5-phosphoalpha-1-(methylphosphono)ribose to
          methylphosphono-PRPP.
          Length = 179

 Score = 27.3 bits (61), Expect = 3.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 32 VAIMGPNGSGKSTL 45
          + ++GP+G+GK TL
Sbjct: 4  IYVVGPSGAGKDTL 17


>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine
           desulfurase/selenocysteine lyase; Validated.
          Length = 406

 Score = 27.4 bits (61), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 47  YLLSGHKDYEITAGDILYKGESILD 71
           Y+ SGHK Y  T   ILY  E++L 
Sbjct: 220 YVFSGHKLYGPTGIGILYVKEALLQ 244


>gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein
           FtsY; Provisional.
          Length = 318

 Score = 27.4 bits (62), Expect = 4.2
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 7   LRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST 44
           L+ ++ +    + + LN++ +   V+ ++G NG GK+T
Sbjct: 92  LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTT 129


>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
          Length = 253

 Score = 27.1 bits (61), Expect = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 31 VVAIMGPNGSGKSTLSYLLS 50
          +V  +G  GSGK+TL+  LS
Sbjct: 4  IVFFLGTAGSGKTTLTKALS 23


>gnl|CDD|132085 TIGR03041, PS_antenn_a_b, chlorophyll a/b binding light-harvesting
           protein.  This model represents a family of proteins
           from the Cyanobacteria, closely homologous to and yet
           distinct from PbsC, a chlorophyll a antenna protein of
           photosystem II. Members are not univerally present in
           Cyanobacteria, while the family has several members per
           genome in Prochlorococcus marinus, with seven members in
           a strain adapted to low light conditions. These antenna
           proteins may deliver light energy to photosystem I
           and/or photosystem II.
          Length = 321

 Score = 26.9 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 60  GDILYKGESILDWSIVERASKGIFLAF-------QYPVEIPG 94
           G  L   E++L +S+   A   I  AF        YPVE  G
Sbjct: 222 GKGLLSAEAVLSYSLAGIAWMAIVAAFWCAVNTTVYPVEFYG 263


>gnl|CDD|184432 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
          Length = 576

 Score = 27.1 bits (61), Expect = 4.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 199 SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
           SF + T   ++L YI+  T     +GK +  G
Sbjct: 345 SFTVTTKDPKILPYIERITGRDPGSGKTVTGG 376


>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
          Length = 880

 Score = 26.9 bits (60), Expect = 4.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 31 VVAIMGPNGSGKSTL----SYLLSGHKDYEITAGDILYKGE 67
          V  I G NGSGKS+L     + L G K  + T  D++  G 
Sbjct: 25 VTVIHGVNGSGKSSLLEACFFALYGSKALDDTLDDVITIGA 65


>gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E.  This
           family describes GspE, the E protein of the type II
           secretion system, also called the main terminal branch
           of the general secretion pathway. This model separates
           GspE from the PilB protein of type IV pilin
           biosynthesis.
          Length = 486

 Score = 27.0 bits (60), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 27  EPSEVVAIMGPNGSGKSTLSY 47
            P  ++ + GP GSGK+T  Y
Sbjct: 240 RPHGIILVTGPTGSGKTTTLY 260


>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF.  Members of
           this protein family are IcmF homologs and tend to be
           associated with type VI secretion systems.
          Length = 1169

 Score = 26.9 bits (60), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 34  IMGPNGSGKSTL 45
           ++GP GSGK+TL
Sbjct: 116 VIGPPGSGKTTL 127


>gnl|CDD|129031 smart00795, Agro_virD5, Agrobacterium VirD5 protein.  The virD
           operon in Agrobacterium encodes a site-specific
           endonuclease, and a number of other poorly characterised
           products. This family represents the VirD5 protein.
          Length = 780

 Score = 26.4 bits (58), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
           L+PS  I DE D   D +AL   +Q   A +S 
Sbjct: 359 LDPSAWIPDEHDPFEDGEALGPPSQASTANKSN 391


>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
          Length = 687

 Score = 26.5 bits (59), Expect = 6.4
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 11/51 (21%)

Query: 32 VAIMGPNGSGKSTLSYLL---SG--HKDYEITAGDILYKGESILDWSIVER 77
          + I+    +GK+TL+  +   +G  HK      G++   G ++ DW   E+
Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKIHK-----MGEV-EDGTTVTDWMPQEQ 55


>gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
          family. 
          Length = 185

 Score = 26.7 bits (60), Expect = 6.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 31 VVAIMGPNGSGKSTL 45
          VV I GPN  GKST 
Sbjct: 1  VVIITGPNMGGKSTY 15


>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
          Length = 259

 Score = 26.2 bits (58), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLL------SGHKDYEITAGDIL 63
           +E +E + ++GP+G GK+ L+  L      +G K    TA D+L
Sbjct: 99  IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
          ATP-binding protein; Provisional.
          Length = 330

 Score = 26.3 bits (58), Expect = 7.3
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 1  MLEIKNLRAKIVDTD--TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKD-YE 56
          +L+I+NL  +   +D   + +  +++ +   E+  ++G +GSGKS ++  + G  KD + 
Sbjct: 3  LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWR 62

Query: 57 ITAGDILYKGESILDWSIVER---ASKGIFLAFQYP 89
          +TA  + +    +L  S  ER       + + FQ P
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98


>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
          Length = 167

 Score = 26.5 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 32 VAIMGPNGSGKSTLSYLLS 50
          + ++G  GSGKSTL+  L 
Sbjct: 4  IILIGSGGSGKSTLARQLG 22


>gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase.
          Length = 329

 Score = 26.3 bits (58), Expect = 8.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 26  VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK 65
           V+PSE V ++         L+Y+L+ H  Y+ T G++  K
Sbjct: 103 VDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELK 142


>gnl|CDD|149610 pfam08616, SPB_interacting, Spindle pole body interacting protein. 
           Yeast YOR129C has been shown to interact with the outer
           plaque of the spindle pole body.
          Length = 645

 Score = 26.2 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 13/42 (30%)

Query: 80  KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
           KG  L  QYP  IPG   +  L              EL++PD
Sbjct: 13  KGPVLKHQYPENIPGDETLHML-------------AELMLPD 41


>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 637

 Score = 26.1 bits (57), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 24  LKVEPSEVVAIMGPNGSGKSTLSYLLS 50
           L+  P  ++ I GP+G GKST   +LS
Sbjct: 105 LENAPKRILLITGPSGCGKSTTIKILS 131


>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
          Length = 223

 Score = 26.1 bits (58), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 32 VAIMGPNGSGKSTLS 46
          VAI G   SGK+T +
Sbjct: 25 VAIDGITASGKTTFA 39


>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase;
           Provisional.
          Length = 743

 Score = 25.9 bits (57), Expect = 9.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 99  QFLKIA--LNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRP 143
           ++ +IA  L+E+R  R   E  I +F   +R      G+  ++  RP
Sbjct: 210 EYKRIAKLLHERRIDR---EHYIEEFVGHLRAEMKAEGVKAEVYGRP 253


>gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit;
          Provisional.
          Length = 482

 Score = 26.0 bits (58), Expect = 9.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
          LK +P + + + GP G GK++L++ L+    +E+
Sbjct: 34 LKGKPKKALLLYGPPGVGKTSLAHALANDYGWEV 67


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,112,553
Number of extensions: 269142
Number of successful extensions: 1279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 411
Length of query: 249
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,028,145
Effective search space: 636446910
Effective search space used: 636446910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)