>TIGR01981 sufD FeS assembly protein SufD; InterPro: IPR011542 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.

Probab=98.32  E-value=4.8e-05  Score=56.13  Aligned_cols=180  Identities=17%  Similarity=0.166  Sum_probs=127.3

Q ss_pred             HHCCCCEEEEEECCEEECCCEEEEEE---C--C-CC-CCCEEEEEECCCCCCEEEEEECCCCCCCCEEECC-CEEEEECC
Q ss_conf             52138748773054477023034320---2--2-32-2210121001798613555303566755201003-12899648
Q gi|254781061|r  138 ILSNDGYKVVIPDECQLNVPLELQAI---Q--C-GG-QMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSS-IADIKVGE  209 (428)
Q Consensus       138 A~~~~g~~I~V~~~~~~~~PI~i~~~---~--~-~~-~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~-~~ei~l~~  209 (428)
T Consensus       149 ~~~~~~~~i~~~~~~~~~v---~e~~~~~~~~~~~~Y~~n~v~~i~~~~~A~v~~~~~--~~~~~~~~~~~W~~~~~~~~  223 (397)
T TIGR01981       149 AFVHPRLLIEVEKGSKITV---IERFEGISLNESKAYFTNSVVEITVGANASVSFVRV--QDFSKNSTHFSWNHRAKIGK  223 (397)
T ss_pred             EEEECCEEEEECCCCEEEE---EEEEECCCCCCCCEEEEECEEEEEECCCCEEEEEEE--ECCCCCEEEEEEEEEEEEEC
T ss_conf             3653453899868980799---998325788864314650408999744878999996--15898169986557776512


Q ss_pred             CCEEEEEECCCCCCCEEEEEECEEEECCCCCEEEEEEEC--CCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHH--H
Q ss_conf             863766300245653014320001120355146778642--565124433566513541246633442274410011--1
Q gi|254781061|r  210 GADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNI--GQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDL--S  285 (428)
Q Consensus       210 ~A~l~~~~iq~~~~~s~~~~~~~~~~~~~S~~~~~~~~~--Gg~~~R~~i~i~L~Ge~a~~~~~g~~l~~~~q~~D~--~  285 (428)
T Consensus       224 ~a~~~~~~~~~Gg~~~~~-~~~~~l~G~~s~~~~~gl~~~~~~~~~D~~~~v~h~~~~~~S~~~~~g~~~d~a~~vF~G~  302 (397)
T TIGR01981       224 DARLRLAVVNLGGKLSRH-NLDVDLEGEGSKLEVKGLAIGAGRQHVDVRTLVEHNGPDTKSNILHRGILDDRAHGVFRGI  302 (397)
T ss_pred             CCEEEEEEEECCCCEEEE-EEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf             865899999927857999-9878882464079999987517981577775688716662432899779926842999987


Q ss_pred             HHHHHCCCCCEEEEEEEEEE-CCCCEE-------EEECCCCCC-CCC
Q ss_conf             22221277752688873000-488527-------874101013-664
Q gi|254781061|r  286 MFLRHKVPNTCSTSVIRNIV-LEKSTG-------VFQGAVHVS-SEA  323 (428)
Q Consensus       286 ~~i~H~~~~t~S~~~~k~vl-~d~s~~-------vf~G~i~V~-~~a  323 (428)
T Consensus       303 ~~i~~~A~~tda~~~~~~LlLs~~A~~d~~P~LeI~~ddV~~~gHgA  349 (397)
T TIGR01981       303 IRIPKGAKGTDAEQLNRNLLLSDKARADTKPQLEIDADDVKCSGHGA  349 (397)
T ss_pred             EEECCCCCCCCEEEEEEEEEECCCCEEEECEEEEEECCCEEECCEEC
T ss_conf             88465574863365631575478762871216799758243211011