HHSEARCH alignment of GI: 254781061 and SCOP domain: d1vh4a_

Alignment
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=674.09  Aligned_cols=400  Identities=24%  Similarity=0.360  Sum_probs=350.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCHHHCCC
Q ss_conf             99999999999986178877899999999999998283239972474258878977513576443-21111110000158
Q gi|254781061|r    7 VETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNS-IATLQKKYKPLVAD   85 (428)
Q Consensus         7 ~~~~l~~~f~~~~~~~~~~~~~~~~R~~a~~~F~~~G~lPtkK~E~WKyT~l~~l~~~~~~~~~~-~~~~~~~~~~~~~d   85 (428)
                      +.+++++.|+....      +..+.|+++|++|.++| |||+|+|+||||||++|....+....+ .............+
T Consensus         2 ~~~~~~~~~~~~~~------~~~~~~~~~l~~f~~~G-lPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (413)
T d1vh4a_           2 ALQQWHHLFEAEGT------KRSPQAQQHLQQLLRTG-LPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLD   74 (413)
T ss_dssp             HHHHHHHHHHC---------CCCHHHHHHHHHHHHHC-CCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf             78999999986288------46299999999999729-889987281479879974357765677668002000234568


Q ss_pred             CEEEEEECCCCCCCCCCC----CCCCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCEEEE
Q ss_conf             159998346542000445----7541005652124201000134555445667887521387487730544770230343
Q gi|254781061|r   86 SIQLSISQQPSSSILKEK----NIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ  161 (428)
Q Consensus        86 ~~~i~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~d~f~~LN~A~~~~g~~I~V~~~~~~~~PI~i~  161 (428)
                      .+.++|.+|.+.+.++..    ++.+....       ...........++|.+||.|++++|++|+||+|+++++||+|+
T Consensus        75 ~~~ivfvnG~~~~~ls~~~~~~~i~i~~~~-------~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~  147 (413)
T d1vh4a_          75 SVRLVFVDGRYVPALSDATEGSGYEVSIND-------DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLM  147 (413)
T ss_dssp             SEEEEEETTEECGGGSCCCTTSSCEEEEES-------CCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEE
T ss_pred             CEEEEEECCEECHHCCCCCCCCCEEEECHH-------HHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEE
T ss_conf             548999899982100567555772885157-------5540411011001233232102543267412535760454146


Q ss_pred             EECCC------CCCCEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEECEEEE
Q ss_conf             20223------222101210017986135553035667552010031289964886376630024565301432000112
Q gi|254781061|r  162 AIQCG------GQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVIL  235 (428)
Q Consensus       162 ~~~~~------~~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~~~~~s~~~~~~~~~~  235 (428)
                      ++.++      ...+||++|++++||+++|+|.|.+.+...+|++++++|.+++||+|+|+++|+++.+++++...++.+
T Consensus       148 ~~~~~~~~~~~~~~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~  227 (413)
T d1vh4a_         148 HITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLL  227 (413)
T ss_dssp             EEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEE
T ss_pred             EEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEEC
T ss_conf             75036443443331114565305520221112114554410000220589952664243033444223342122011200


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEC
Q ss_conf             03551467786425651244335665135412466334422744100111222212777526888730004885278741
Q gi|254781061|r  236 EKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQG  315 (428)
Q Consensus       236 ~~~S~~~~~~~~~Gg~~~R~~i~i~L~Ge~a~~~~~g~~l~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G  315 (428)
                      +++|.|+++++.+|+.++|.++++.|.|+||+++++|++++.++|++|+++.|+|.+|+|+|+|.+|||+.|+|++||+|
T Consensus       228 ~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G  307 (413)
T d1vh4a_         228 AEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNG  307 (413)
T ss_dssp             CTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEE
T ss_conf             34541465320002110011000011200011001102346642243322232015554204134312466664048865


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             01013664100000000046612871798121247713873365542212389999999994688989999999999999
Q gi|254781061|r  316 AVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS  395 (428)
Q Consensus       316 ~i~V~~~a~~t~~~q~~~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~  395 (428)
                      +|+|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++||++||++
T Consensus       308 ~i~V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~  387 (413)
T d1vh4a_         308 LINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAA  387 (413)
T ss_dssp             EEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             30356552256657766530156774487552289963981699400046789899999997699999999999999899


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9988589789999999999999741
Q gi|254781061|r  396 EIVEDLNDQVLQFSIEEILSSWLKN  420 (428)
Q Consensus       396 ~~i~~i~~~~~~~~~~~~i~~~l~~  420 (428)
                      |++++||++.+|+++.+.|++||..
T Consensus       388 ~~~~~~~~~~~~~~~~~~i~~~l~~  412 (413)
T d1vh4a_         388 ELTEALRDEGLKQQVLARIGQRLPG  412 (413)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf             9998698299999999999987248


SCOP domain information

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]