RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
(428 letters)
>gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein,
SufD, forms a cytosolic complex SufBCD. This complex
enhances the cysteine desulfurase of SufSE. The system,
together with SufA, is believed to act in iron-sulfur
cluster formation during oxidative stress. SufB and SufD
are homologous. Note that SufC belongs to the family of
ABC transporter ATP binding proteins, so this protein,
encoded by an adjacent gene, has often been annotated as
a transporter component.
Length = 366
Score = 258 bits (661), Expect = 2e-69
Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 10/368 (2%)
Query: 45 LPTRKIENWHYTDLKNILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKN 104
LP R+IE W YTDL+N+L + ++ + + S +L L +
Sbjct: 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSPRLVFVDGVIVPDLSDAL 60
Query: 105 IEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQ 164
H E ++ L LS+ D +N L NDG + +P ++ P+E++ I
Sbjct: 61 PL-----HPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIG 115
Query: 165 CGGQ---MHLRYPISFGMNSRTTVVERYTTLTNDNS--FVSSIADIKVGEGADITWVIVL 219
GG+ +H R I S+ TV+ER+ T++ ++ F +S+ +I VG A + +V V
Sbjct: 116 VGGEKNFVHPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQ 175
Query: 220 DQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGK 279
TH R + + ++L++ V+N+G LSR +D++GE S+ ++G+ +G
Sbjct: 176 FFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEGSKLEVKGLAFGAGS 235
Query: 280 AHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSN 339
H D+ + H P+T S + R I+ +++ GVF+G +H+ A+G++A LL S+
Sbjct: 236 QHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSD 295
Query: 340 EGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399
+ KP LEI ADDV+ HGAT+ I+ E L+YL +RGI + +A +L F+ EI+E
Sbjct: 296 DARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIE 355
Query: 400 DLNDQVLQ 407
++ D+ L+
Sbjct: 356 EIPDESLK 363
>gnl|CDD|182859 PRK10948, PRK10948, cysteine desulfurase activator complex subunit
SufD; Provisional.
Length = 424
Score = 146 bits (370), Expect = 1e-35
Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 14/372 (3%)
Query: 45 LPTRKIENWHYTDLKNILK---VLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILK 101
LPTRK E+W YT L+ +L V I+ Q+ L D+++L S L
Sbjct: 42 LPTRKHEDWKYTPLEGLLNSQFVFSIAA-EISPAQRDALALTIDAVRLVFVDGRFSPALS 100
Query: 102 EKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ 161
+ P+ + D+ + + + ++ L+ + +P + PL L
Sbjct: 101 DSTEG--PYQ-VSINDDRQGLPAAI-QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLL 156
Query: 162 AIQCG--GQM----HLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITW 215
I G G+ H R+ + + TV+E + +L F + + V + A +
Sbjct: 157 HITQGVAGEELNTAHYRHHLDLAEGAEATVIEHFVSLNEARHFTGARLTMNVADNAHLNH 216
Query: 216 VIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINL 275
+ + + H ++L + + +G + R S + GE S L + +
Sbjct: 217 IKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGAAVLRHNTSTQLNGENSTLRLNSLAM 276
Query: 276 LSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTL 335
D +L H S + + IV +K VF G + V+ A ++ +MT N L
Sbjct: 277 PVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLIKVAQHAIKTDGQMTNNNL 336
Query: 336 LFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS 395
L KP+LEI+ADDV+C HGAT+ I+ E L+YL +RGI++ A M+ +AF +
Sbjct: 337 LLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAA 396
Query: 396 EIVEDLNDQVLQ 407
E+ E + D+ L+
Sbjct: 397 ELTEAIRDEALK 408
>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB. This protein, SufB,
forms a cytosolic complex SufBCD. This complex enhances
the cysteine desulfurase of SufSE. The system, together
with SufA, is believed to act in iron-sulfur cluster
formation during oxidative stress. Note that SufC
belongs to the family of ABC transporter ATP binding
proteins, so this protein, encoded by an adjacent gene,
has often been annotated as a transporter component.
Length = 448
Score = 100 bits (250), Expect = 1e-21
Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 3/218 (1%)
Query: 194 NDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLS 253
+ NS +++ ++ V E A + + V + +L R ++E+ +++ +IG ++
Sbjct: 229 STNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKIT 288
Query: 254 RRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVF 313
+ S +KGE ++ I H D + H PNT ST + ++I +
Sbjct: 289 MKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTY 348
Query: 314 QGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLY 373
+G V + A+G+ + + ++LL +E + P +EIF D V H AT+S I+ E L+
Sbjct: 349 RGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKISEEQLF 408
Query: 374 YLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411
YLM+RG+S+ A +M+ F+ I ++L +++++E
Sbjct: 409 YLMSRGLSEEDARAMIVRGFVEPITKELP---MEYAVE 443
>gnl|CDD|183322 PRK11814, PRK11814, cysteine desulfurase activator complex subunit
SufB; Provisional.
Length = 486
Score = 52.9 bits (128), Expect = 1e-07
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 290 HKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPEL 349
H NT ST + + I S ++G V + +A + ++LL ++ + P +
Sbjct: 354 HIGKNTKSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYI 413
Query: 350 EIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFS 409
E+ + Q H AT S I+ + L+Y RGIS+ A SM+ + F E+ ++L ++F+
Sbjct: 414 EVKNNSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELP---MEFA 470
Query: 410 IE 411
+E
Sbjct: 471 VE 472
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
Length = 335
Score = 27.8 bits (62), Expect = 5.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 246 LNIGQGLSRRELSIDVKGEESQFMLRGINL----------LSGKAHSDLS 285
L++G GL EL V GEE +++L+ IN L AH+D+S
Sbjct: 177 LSLGLGLEEDELKEAVGGEELEYLLK-INYYPPCPRPDLALGVVAHTDMS 225
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,621,116
Number of extensions: 411763
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 9
Length of query: 428
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 332
Effective length of database: 3,920,105
Effective search space: 1301474860
Effective search space used: 1301474860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)