RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
         (428 letters)



>1vh4_A SUFD protein; structural genomics, protein binding protein;
           1.75A {Escherichia coli} (A:)
          Length = 435

 Score =  221 bits (563), Expect = 2e-58
 Identities = 92/397 (23%), Positives = 165/397 (41%), Gaps = 13/397 (3%)

Query: 30  AFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNSIATLQKKYKPLV--ADSI 87
              ++ L      GL PTRK ENW YT L+ ++        +     ++   L    DS+
Sbjct: 29  PQAQQHLQQLLRTGL-PTRKHENWKYTPLEGLIN-SQFVSIAGEISPQQRDALALTLDSV 86

Query: 88  QLSISQQPSSSILKEKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVV 147
           +L          L +          I   +++   L    + +   ++   L+     + 
Sbjct: 87  RLVFVDGRYVPALSDATEGSGYEVSI---NDDRQGLPDAIQAEVFLHLTESLAQSVTHIA 143

Query: 148 IPDECQLNVPLELQAIQCG------GQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSS 201
           +    +   PL L  I  G         H R+ +     +  TV+E + +L +   F  +
Sbjct: 144 VKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGA 203

Query: 202 IADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDV 261
              I V   A +  + +  +     H     ++L + ++       +G  + R   S  +
Sbjct: 204 RFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQL 263

Query: 262 KGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSS 321
            GE S   +  + +       D   +L H      S  + + IV +K   VF G ++V+ 
Sbjct: 264 NGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQ 323

Query: 322 EAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGIS 381
            A  ++ +MT N LL         KP+LEI+ADDV+C HGAT+  I+ E ++YL +RGI+
Sbjct: 324 HAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGIN 383

Query: 382 KNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWL 418
           +  A  M+ +AF +E+ E L D+ L+  +   +   L
Sbjct: 384 QQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRL 420


>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam
           utilization protein, structural genomics; 1.70A
           {Pyrococcus horikoshii OT3} (A:)
          Length = 255

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 33/143 (23%)

Query: 1   MGNLTAVETMLLQSCDEACQKYYRNQSVVA----------------FRRRLLCD--FRTQ 42
           + N    E  L ++  E    + ++  +V                     +  D  +   
Sbjct: 114 LYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPD 173

Query: 43  GLLPTRKIENWHYTD----LKNILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSS- 97
           G L  R        D     + ++ ++      I  +  ++  L  D+I +     P + 
Sbjct: 174 GTLVPRGRPGAVIEDKEEIAERVISMVKDGG--IRAINGEWVDLKVDTICVH-GDNPKAV 230

Query: 98  -------SILKEKNIEVLPFSHI 113
                   +L+E+ ++++P    
Sbjct: 231 EITSYIRKVLEEEGVKIVPMKEF 253


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.5 bits (61), Expect = 3.2
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 7/33 (21%)

Query: 29 VAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNI 61
          + +R+R L     Q       I++W   +L+ +
Sbjct: 26 MKYRKRQLVTREAQ-------IKDWVENELEAL 51


>1bf5_A Signal transducer and activator of transcription
           1-alpha/beta; complex (SH2 domain/DNA), SH2 domain,
           transcription factor; HET: DNA PTR; 2.90A {Homo sapiens}
           (A:327-444)
          Length = 118

 Score = 27.4 bits (61), Expect = 3.5
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 383 NQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKNNSANMVM 427
            Q   +LS  F S     LN   L    E++L     N S + ++
Sbjct: 35  AQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLG---PNASPDGLI 76


>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member,
           transcription; 2.70A {Streptococcus gordonii} PDB:
           3hrt_A 3hru_A (A:139-214)
          Length = 76

 Score = 26.2 bits (58), Expect = 9.3
 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 354 DDVQCGHGATISDI--NPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399
           ++ +      ++ +  N + L YL   G+   +    L +   S +  
Sbjct: 6   EEAKEKGDYILARVHDNFDLLTYLERNGLQVGKTIRFLGYDDFSHLYS 53


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,005,872
Number of extensions: 128370
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 5
Length of query: 428
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 337
Effective length of database: 1,879,794
Effective search space: 633490578
Effective search space used: 633490578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)