RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
(428 letters)
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A
{Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Length = 435
Score = 174 bits (440), Expect = 4e-44
Identities = 91/395 (23%), Positives = 162/395 (41%), Gaps = 5/395 (1%)
Query: 32 RRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTN-KNSIATLQKKYKPLVADSIQLS 90
++ L GL PTRK ENW YT L+ ++ + I+ Q+ L DS++L
Sbjct: 31 AQQHLQQLLRTGL-PTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLV 89
Query: 91 ISQ---QPSSSILKEKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVV 147
P+ S E + + + ++ E +
Sbjct: 90 FVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQR 149
Query: 148 IPDECQLNVPLELQAIQCGGQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKV 207
L + A + H R+ + + TV+E + +L + F + I V
Sbjct: 150 PAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINV 209
Query: 208 GEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQ 267
A + + + + H ++L + ++ +G + R S + GE S
Sbjct: 210 AANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENST 269
Query: 268 FMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSN 327
+ + + D +L H S + + IV +K VF G ++V+ A ++
Sbjct: 270 LRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTD 329
Query: 328 ARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACS 387
+MT N LL KP+LEI+ADDV+C HGAT+ I+ E ++YL +RGI++ A
Sbjct: 330 GQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQ 389
Query: 388 MLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKNNS 422
M+ +AF +E+ E L D+ L+ + + L +
Sbjct: 390 MIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGA 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.0 bits (166), Expect = 4e-12
Identities = 71/443 (16%), Positives = 135/443 (30%), Gaps = 153/443 (34%)
Query: 71 SIATLQKKYKPLVA--DSIQLSI----SQQPSSSILKEKNIEVLPFSHIENTDENSYCLE 124
+ +PL S++ + + +S L+E+ ++LP E T+ + E
Sbjct: 2 DAYST----RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP----EPTEGFAADDE 53
Query: 125 PLSEHDT----IGYINGILSNDGYKVVIPDECQLNVPLELQAIQ----CGGQMH---LRY 173
P + + +GY++ ++ D+ + L L + G +H +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQF--DQV---LNLCLTEFENCYLEGNDIHALAAKL 108
Query: 174 PISFGMNSRTTVVER-------YTT--LTNDNS-------FVSSIADIKVGEGADITWVI 217
+ TT+V+ T + ++ + G A + I
Sbjct: 109 LQE----NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE---GN-AQL-VAI 159
Query: 218 VLDQGIEDTHLGQLRVILEK-KSSLKVFVLNIG---QGLSRRELSIDVKGEESQFMLRGI 273
QG D + +LR + + + + L R L + + +G+
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE------KVFTQGL 213
Query: 274 NLLSGKAHSD------------LSM-------FLRHKVPNTCSTSVIRNIVLEKSTGVF- 313
N+L + +S + V T +L + G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--TA-------KLLGFTPGELR 264
Query: 314 ----------QG---AVHVSS----EAQGSNARMTANTLLF-----SNEGSFYVKPEL-- 349
QG AV ++ E+ + R A T+LF E Y P
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEA--Y--PNTSL 319
Query: 350 --EIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVL- 406
I D ++ G P + L +++ Q + + V N L
Sbjct: 320 PPSILEDSLENNEGV------PSPM--LSISNLTQEQ---------VQDYVNKTN-SHLP 361
Query: 407 ---QFSIEEILSSWLKNNSANMV 426
Q I S L N + N+V
Sbjct: 362 AGKQVEI----S--LVNGAKNLV 378
Score = 50.7 bits (121), Expect = 6e-07
Identities = 69/447 (15%), Positives = 133/447 (29%), Gaps = 183/447 (40%)
Query: 32 RRRLLCD-FRTQGLLPTRKIENWHYTDLKNILKVLPTNKNSIATL---Q----------- 76
+ L+ + + + R + + L + + + + Q
Sbjct: 119 TKELIKNYITARIMA-KRPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 77 ---KKYKPLVADSIQ------LSISQQPSSSI-LKEKNIEVLPF-SHIENTDENSYCLE- 124
+ Y LV D I+ + + + + + + +L + + NT + Y L
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 125 ----PLSEHDTIGYINGILSNDGYKVVIPDECQ-LNV-PLELQAIQCG------GQMHLR 172
PL IG I L++ Y V + L P EL++ G G
Sbjct: 235 PISCPL-----IGVIQ--LAH--YVVT----AKLLGFTPGELRSYLKGATGHSQG----- 276
Query: 173 YPI-------------SFGMNSRTTVV----------ERY--TTLTNDNSFVSSIAD-IK 206
+ SF ++ R + E Y T+L S + D ++
Sbjct: 277 --LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-----SILEDSLE 329
Query: 207 VGEGADITWVI-VLDQGIE--DTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKG 263
EG + ++ + + E ++ + L +++ ++N + ++ V G
Sbjct: 330 NNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-----GAK--NLVVSG 381
Query: 264 E-ESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSE 322
+S L G+NL LR K + +G+ Q + S
Sbjct: 382 PPQS---LYGLNLT-----------LR-KA--------------KAPSGLDQSRIPFSER 412
Query: 323 AQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISK 382
L FSN F L + + P H +
Sbjct: 413 K-----------LKFSN--RF-----LPVAS---------------PFHSHL-------- 431
Query: 383 NQACSMLSHAFMSEIVEDLNDQVLQFS 409
L A I +DL + F+
Sbjct: 432 ------LVPAS-DLINKDLVKNNVSFN 451
Score = 29.9 bits (67), Expect = 1.00
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 29/115 (25%)
Query: 330 MTANTL--LFSNEG----SFYVKPELEIFADDVQCGHGATIS--------DINPEHLYYL 375
M A + L + G V A +Q + D P L
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 376 MARGISKNQACSMLSHAFMSEIVEDLN----DQVLQFSIEEILSSWLKNNSANMV 426
+ + + ++S +VE DQVL + E + +L+ N + +
Sbjct: 61 VGKFLG-----------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 31.3 bits (70), Expect = 0.39
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 183 TTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVI 234
V D F ++GEG ++ L++ I+ G+ ++
Sbjct: 45 AIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.52
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 69 KNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIE 106
K ++ LQ K L AD P+ +I + +E
Sbjct: 19 KQALKKLQASLK-LYAD------DSAPALAI--KATME 47
Score = 28.8 bits (63), Expect = 2.6
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 10/26 (38%)
Query: 345 VKPELEIFADD------VQCGHGATI 364
++ L+++ADD ++ AT+
Sbjct: 25 LQASLKLYADDSAPALAIK----ATM 46
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A
{Delftia acidovorans}
Length = 409
Score = 28.5 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 374 YLMARGISKNQACSMLSHAFM----SEIV 398
YL G S QA S+L A + S +V
Sbjct: 338 YLKKFGYSGAQAYSLLGTAPVQGHISGVV 366
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum}
Length = 105
Score = 27.5 bits (61), Expect = 5.5
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 354 DDVQCGHGATISDIN--PEHLYYLMARGISKNQACSMLSHAFMSEIVE-DLNDQVLQFSI 410
+++ G A ++ + P LM G+ + +L A + + +E + N +L
Sbjct: 4 SELKAGDRAEVTSVAAEPAVRRRLMDLGLVRGAKLKVLRFAPLGDPIEVNCNGMLLTMRR 63
Query: 411 EEILSSWLKNNSANMVMV 428
E A + V
Sbjct: 64 NE----------AEGITV 71
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium
expansum}
Length = 258
Score = 27.3 bits (60), Expect = 6.4
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 353 ADDVQCGHGATISDINPEHLYYLMARGISKNQA-CSMLS 390
D C G + + P H+ G+ A C LS
Sbjct: 223 QRDKSCSAGNGMYAVTPGHIASF---GVVMLTAGCGYLS 258
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, ,
structural genomic, structural genomics, PSI-2; NMR
{Clostridium thermocellum}
Length = 162
Score = 26.7 bits (59), Expect = 9.8
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 354 DDVQCGHGATISDI--NPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399
+ G A I + + E L+ G + ++ A + + +
Sbjct: 4 SRLVPGVPARIKRLEVSGELHEKLVGMGFVPGEEIEIVQVAPLGDPIV 51
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,449,663
Number of extensions: 152283
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 11
Length of query: 428
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 333
Effective length of database: 3,390,050
Effective search space: 1128886650
Effective search space used: 1128886650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)