RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62] (428 letters) >d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Length = 413 Score = 169 bits (429), Expect = 3e-43 Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 7/392 (1%) Query: 32 RRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTN-KNSIATLQKKYKPLVADSIQLS 90 ++ L GL PTRK ENW YT L+ ++ + I+ Q+ L DS++L Sbjct: 21 AQQHLQQLLRTGL-PTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLV 79 Query: 91 I----SQQPSSSILKEKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKV 146 S + EV + + L +++ ++ Sbjct: 80 FVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRG-Q 138 Query: 147 VIPDECQLNVPLELQAIQCGGQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIK 206 L + A + H R+ + + TV+E + +L + F + I Sbjct: 139 RPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTIN 198 Query: 207 VGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEES 266 V A + + + + H ++L + ++ +G + R S + GE S Sbjct: 199 VAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENS 258 Query: 267 QFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGS 326 + + + D +L H S + + IV +K VF G ++V+ A + Sbjct: 259 TLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKT 318 Query: 327 NARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQAC 386 + +MT N LL KP+LEI+ADDV+C HGAT+ I+ E ++YL +RGI++ A Sbjct: 319 DGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQ 378 Query: 387 SMLSHAFMSEIVEDLNDQVLQFSIEEILSSWL 418 M+ +AF +E+ E L D+ L+ + + L Sbjct: 379 QMIIYAFAAELTEALRDEGLKQQVLARIGQRL 410 >d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId: 1280]} Length = 293 Score = 25.6 bits (56), Expect = 7.4 Identities = 5/46 (10%), Positives = 10/46 (21%) Query: 60 NILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNI 105 I P N ++ + + I +I Sbjct: 97 QISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSI 142 >d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Length = 561 Score = 25.7 bits (56), Expect = 7.7 Identities = 6/51 (11%), Positives = 18/51 (35%) Query: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411 I ++ + I ++ ++ EI+ +N + Q++ Sbjct: 358 DDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNAHLKQWTER 408 >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} Length = 261 Score = 25.6 bits (55), Expect = 8.3 Identities = 7/22 (31%), Positives = 9/22 (40%) Query: 354 DDVQCGHGATISDINPEHLYYL 375 D+VQC +N H Y Sbjct: 230 DEVQCCEAQGGQGVNDAHTTYF 251 >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 253 Score = 25.2 bits (55), Expect = 9.8 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%) Query: 128 EHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISF-GMNSRTTVV 186 E D N+G +PD+ L +P +++ + + + Sbjct: 144 ETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMY 203 Query: 187 ERYTT 191 ER T Sbjct: 204 ERLTI 208 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.133 0.379 Gapped Lambda K H 0.267 0.0609 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,495,705 Number of extensions: 66710 Number of successful extensions: 136 Number of sequences better than 10.0: 1 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 7 Length of query: 428 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 340 Effective length of database: 1,199,356 Effective search space: 407781040 Effective search space used: 407781040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.8 bits)