RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
         (428 letters)



>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD
           {Escherichia coli [TaxId: 562]}
          Length = 413

 Score =  169 bits (429), Expect = 3e-43
 Identities = 91/392 (23%), Positives = 162/392 (41%), Gaps = 7/392 (1%)

Query: 32  RRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTN-KNSIATLQKKYKPLVADSIQLS 90
            ++ L      GL PTRK ENW YT L+ ++     +    I+  Q+    L  DS++L 
Sbjct: 21  AQQHLQQLLRTGL-PTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLV 79

Query: 91  I----SQQPSSSILKEKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKV 146
                     S   +    EV      +   +       L   +++      ++      
Sbjct: 80  FVDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRG-Q 138

Query: 147 VIPDECQLNVPLELQAIQCGGQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIK 206
                  L    +  A +     H R+ +     +  TV+E + +L +   F  +   I 
Sbjct: 139 RPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTIN 198

Query: 207 VGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEES 266
           V   A +  + +  +     H     ++L + ++       +G  + R   S  + GE S
Sbjct: 199 VAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENS 258

Query: 267 QFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGS 326
              +  + +       D   +L H      S  + + IV +K   VF G ++V+  A  +
Sbjct: 259 TLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKT 318

Query: 327 NARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQAC 386
           + +MT N LL         KP+LEI+ADDV+C HGAT+  I+ E ++YL +RGI++  A 
Sbjct: 319 DGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQ 378

Query: 387 SMLSHAFMSEIVEDLNDQVLQFSIEEILSSWL 418
            M+ +AF +E+ E L D+ L+  +   +   L
Sbjct: 379 QMIIYAFAAELTEALRDEGLKQQVLARIGQRL 410


>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
           1280]}
          Length = 293

 Score = 25.6 bits (56), Expect = 7.4
 Identities = 5/46 (10%), Positives = 10/46 (21%)

Query: 60  NILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNI 105
            I    P N                 ++    + +    I    +I
Sbjct: 97  QISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSI 142


>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
           NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
          Length = 561

 Score = 25.7 bits (56), Expect = 7.7
 Identities = 6/51 (11%), Positives = 18/51 (35%)

Query: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411
              I ++       +    I  ++   ++      EI+  +N  + Q++  
Sbjct: 358 DDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNAHLKQWTER 408


>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
           [TaxId: 5061]}
          Length = 261

 Score = 25.6 bits (55), Expect = 8.3
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 354 DDVQCGHGATISDINPEHLYYL 375
           D+VQC        +N  H  Y 
Sbjct: 230 DEVQCCEAQGGQGVNDAHTTYF 251


>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 253

 Score = 25.2 bits (55), Expect = 9.8
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 128 EHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISF-GMNSRTTVV 186
           E D          N+G    +PD+  L +P  +++ +       +             + 
Sbjct: 144 ETDEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMY 203

Query: 187 ERYTT 191
           ER T 
Sbjct: 204 ERLTI 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,495,705
Number of extensions: 66710
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 7
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)