BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
(428 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 428
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60
MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN
Sbjct: 1 MGNLTAVETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKN 60
Query: 61 ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120
ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS
Sbjct: 61 ILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENS 120
Query: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180
YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN
Sbjct: 121 YCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGGQMHLRYPISFGMN 180
Query: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240
SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS
Sbjct: 181 SRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSS 240
Query: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300
LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV
Sbjct: 241 LKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSV 300
Query: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360
IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH
Sbjct: 301 IRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGH 360
Query: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420
GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN
Sbjct: 361 GATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420
Query: 421 NSANMVMV 428
NSANMVMV
Sbjct: 421 NSANMVMV 428
>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
Liberibacter asiaticus str. psy62]
Length = 489
Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 238 KSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCS 297
+S + L G ++ + S ++GE+S I + +G D + H NT S
Sbjct: 305 RSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTS 364
Query: 298 TSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQ 357
V + I S ++G V V A S ++LL N + P +E
Sbjct: 365 RIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCN 424
Query: 358 CGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411
H AT S I+ EHL+Y + RGI + A +++ + F+ E+++ L ++F++E
Sbjct: 425 LEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLP---MEFAVE 475
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 69 KNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTD 117
KN + LQ Y+P DS+ +Q ++K+K E++P S I+NT+
Sbjct: 615 KNFLVRLQ--YQP--GDSV----AQTRVLEMVKKKITEIVPLSTIQNTE 655
>gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 364 ISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLN-----DQVLQFSIEEIL 414
I DI P H L + + AC + E+ DLN DQ +F +E++L
Sbjct: 71 ICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQ--RFQMEQLL 124
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 23.1 bits (48), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 392 AFMSEIVEDLNDQVLQFS 409
AF+ EIVE N+ + FS
Sbjct: 464 AFLKEIVETFNNSITDFS 481
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,177
Number of Sequences: 1233
Number of extensions: 11244
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 10
length of query: 428
length of database: 328,796
effective HSP length: 76
effective length of query: 352
effective length of database: 235,088
effective search space: 82750976
effective search space used: 82750976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)