HHsearch alignment for GI: 254781062 and conserved domain: COG0076
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].
Probab=99.95 E-value=8.8e-28 Score=194.73 Aligned_cols=314 Identities=24% Similarity=0.280 Sum_probs=223.3
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 86599766888898989999999999861498660267999999999999999999982879765433468768987654
Q gi|254781062|r 22 KPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLV 101 (406)
Q Consensus 22 ~~~iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~ 101 (406)
T Consensus 61 ~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~--~p~a~~---~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~la 135 (460)
T COG0076 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDE--SPAAAE---LEERVVNMLSDLLGAPEEASGTFTSGGTEANLLA 135 (460)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCCHHH---HHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
T ss_conf 86556763578886799999999987347998123--831588---8999999999995799766067961707999999
Q ss_pred HHHHHHHHH-HCC---------CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHCCCCCCC--C
Q ss_conf 322344432-013---------44345401100001000012222322222222222-2210257887510233443--3
Q gi|254781062|r 102 SYGWGARHI-STG---------DEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDN-QGFFHIDEFKNRLTERTKL--I 168 (406)
Q Consensus 102 ~~~~~~~~~-~~g---------d~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~-~g~id~~~l~~~i~~~t~l--v 168 (406)
T Consensus 136 l~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s----~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~v 211 (460)
T COG0076 136 LLAARERWRKRALAESGKPGGKPNIVCSETAHFS----FEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211 (460)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEE----HHHHHHHHCCCCEEEEEECCCEEECHHHHHHHHHHHCCCCEE
T ss_conf 9999999876644202344688749945743120----999999818852378752475056899999999874647649
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC-------CHHHHCCCCCCCCCCCC-CCCCCCCHHHCCC
Q ss_conf 222222223333333210002344443101233200011100-------00110011222343222-3544431000256
Q gi|254781062|r 169 AITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFV-------DVQDIDCDWYIITGHKL-YGPSGIGGLYSKE 240 (406)
Q Consensus 169 ~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~i-------d~~~~~~D~~~~S~hK~-~Gp~G~G~l~~~~ 240 (406)
T Consensus 212 V~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd 291 (460)
T COG0076 212 VGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRD 291 (460)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf 99726888877788999999999769978987344002110247422535178882089988642778888706999968
Q ss_pred C-CCCCC----EEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-63100----121145303433202453003310000012212024566421012332222222222222222222222
Q gi|254781062|r 241 S-RLNEM----DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSR 315 (406)
Q Consensus 241 ~-~~~~~----~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~ 315 (406)
T Consensus 292 ~e~l~~~~~~~~~yl~~~~~-~~~t-------------i~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~ 357 (460)
T COG0076 292 EEALRRILIFADYYLPGGGI-PNFT-------------ILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEE 357 (460)
T ss_pred HHHHHHHHHCCCCCCCCCCC-CCEE-------------EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89846776123667787786-6636-------------885054189999999999967888999999999999999999
Q ss_pred CCCCCEEEECCCCCCCCCEEEEEECCC-C-HHHHHHHHHHCCCEEEE
Q ss_conf 222210132268521586799980899-9-99999999878969997
Q gi|254781062|r 316 LKEVRGMQLVNESLEDSPIISFRLGNI-H-PYDLALFLDGEGIAIRA 360 (406)
Q Consensus 316 L~~~~g~~i~~~~~~~~~iv~~~~~~~-~-~~~v~~~L~~~gI~v~~ 360 (406)
T Consensus 358 l~~~~~~e~~~~p--~l~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~ 402 (460)
T COG0076 358 LEKLGDFELVNEP--ELPIVAFRLKDDEDTLADLSERLDRRGWQVPA 402 (460)
T ss_pred HHHCCCCEEECCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 8647882763388--65079996576432023147899862975520