HHsearch alignment for GI: 254781062 and conserved domain: COG0520
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=661.55 Aligned_cols=401 Identities=48% Similarity=0.828 Sum_probs=385.7
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98897899873841026565786599766888898989999999999861498660267999999999999999999982
Q gi|254781062|r 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFI 80 (406)
Q Consensus 1 m~~d~~~~R~~fp~l~~~~~~~~~iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~l 80 (406)
T Consensus 1 ~~~~~~~~r~~fp~l~~~~-~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~ 79 (405)
T COG0520 1 TMFDVAAVRADFPALKREV-GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL 79 (405)
T ss_pred CCCCHHHHHHHHHHHHHCC-CCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888688876668877422-678476367656667889999999999974024575544127999999999999999981
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87976543346876898765432234443201344345401100001000012222322222222222221025788751
Q gi|254781062|r 81 NASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNR 160 (406)
Q Consensus 81 ga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~ 160 (406)
T Consensus 80 ~a~~~~eIvft~~tT~aln~va~~l~~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~d~~~~~ 158 (405)
T COG0520 80 NADSSDEIVFTRGTTEALNLVARGLGRS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL 158 (405)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 9998772999598379999999970241-068998998046552008999999987596899984189997288999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCHHHCC
Q ss_conf 023344332222222233333332100023444431012332000111000011001122234322-2354443100025
Q gi|254781062|r 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSK 239 (406)
Q Consensus 161 i~~~t~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK-~~Gp~G~G~l~~~ 239 (406)
T Consensus 159 i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r 238 (405)
T COG0520 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVR 238 (405)
T ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEEEC
T ss_conf 69994499996641675540409999999998499899977133475668855618989997674325799852999986
Q ss_pred CCCCCCCEEECCCCEEEEEEEC-CCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6663100121145303433202-453003310000012212024566421012332222222222222222222222222
Q gi|254781062|r 240 ESRLNEMDPFMGGSEMIADVTQ-DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKE 318 (406)
Q Consensus 240 ~~~~~~~~p~~~g~~~~~~~~~-~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 318 (406)
T Consensus 239 ~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~ 318 (405)
T COG0520 239 KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE 318 (405)
T ss_pred HHHHHHCCCCCCCCCCEEECCCCCCCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 65584378977788724401445553015641531557843788986999999999857999999999999999999854
Q ss_pred CCEEEECCCCC-CCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 21013226852-15867999808999999999998789699975211278899728995799993588899999999999
Q gi|254781062|r 319 VRGMQLVNESL-EDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIET 397 (406)
Q Consensus 319 ~~g~~i~~~~~-~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~ 397 (406)
T Consensus 319 ~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~a 398 (405)
T COG0520 319 LPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEA 398 (405)
T ss_pred CCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 89849964663467746999978959899999998678699825644326787537777579997425999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781062|r 398 LKKSIQ 403 (406)
Q Consensus 398 l~~~i~ 403 (406)
T Consensus 399 L~~~~~ 404 (405)
T COG0520 399 LKKALA 404 (405)
T ss_pred HHHHHC
T ss_conf 998741