HHsearch alignment for GI: 254781062 and conserved domain: COG1003

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism].
Probab=99.72  E-value=3.2e-17  Score=128.16  Aligned_cols=312  Identities=20%  Similarity=0.230  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHH---HHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999999828797654334687-689876---54322344432013----443454011000010000122223
Q gi|254781062|r   66 TDKYEKARDKVRRFINASSVKEIIFTRS-ATESIN---LVSYGWGARHISTG----DEIVLSVMEHHSNIIPWYFLRQRR  137 (406)
Q Consensus        66 ~~~~~~aR~~ia~~lga~~~~~v~ft~~-~Te~~n---~~~~~~~~~~~~~g----d~Vi~s~~eh~s~~~~~~~~~~~~  137 (406)
T Consensus       108 l~li~~Lq~~L~~ITG~---DavsLQP~AGAqGE~aGll~Ir~Y---He~rG~~~R~~~LIP~SAHGTNPAS----Aam~  177 (496)
T COG1003         108 LELIYELQEWLKEITGM---DAVSLQPNAGAQGEYAGLLAIRAY---HESRGEGHRNICLIPDSAHGTNPAS----AAMA  177 (496)
T ss_pred             HHHHHHHHHHHHHHCCC---CEEECCCCCCCCHHHHHHHHHHHH---HHHCCCCCCCEEEEECCCCCCCHHH----HHHC
T ss_conf             99999999999974097---626406787764156789999999---9975887776798316556898656----7654


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCC-CHHHH
Q ss_conf             2222222222222102578875102334433222222223333-333210002344443101233200011100-00110
Q gi|254781062|r  138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV-IPIKEICRIAHERNIPVLVDGSQGSVHNFV-DVQDI  215 (406)
Q Consensus       138 G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~~-~pi~~I~~~~~~~g~~~~vD~aq~~g~~~i-d~~~~  215 (406)
T Consensus       178 G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPs-T~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~  256 (496)
T COG1003         178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPS-TLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDM  256 (496)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCC
T ss_conf             8559998328988716999998741311588861686-454504519999999997299898447543525225566556


Q ss_pred             CCCCCCCCCCC-CCCCCC-----CCHHHCCCCCCCCCEEECCCCEEE---EEEECCCCCCCCCHHCCCCCCCCCHHHHHH
Q ss_conf             01122234322-235444-----310002566631001211453034---332024530033100000122120245664
Q gi|254781062|r  216 DCDWYIITGHK-LYGPSG-----IGGLYSKESRLNEMDPFMGGSEMI---ADVTQDMVTYADLPYRFEPGTPPISQAIAL  286 (406)
Q Consensus       216 ~~D~~~~S~hK-~~Gp~G-----~G~l~~~~~~~~~~~p~~~g~~~~---~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al  286 (406)
T Consensus       257 G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~----pfLP~p~~~~~~~~y~~~~~~~~s~g-~~~---a~~Gs~~il  328 (496)
T COG1003         257 GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLA----PFLPGPVVYHDVGEYRLDYDGKKSIG-VSA---APYGSASIL  328 (496)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCCE-EEC---CCCCCCHHH
T ss_conf             5635775223110258888999877602585512----33898733477753003678776422-651---455761689


Q ss_pred             HHHCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC---CCCCEEEEE----ECCCCHHHHHHHHHHCCC
Q ss_conf             2101233222---222222222222222222222221013226852---158679998----089999999999987896
Q gi|254781062|r  287 GVALDYVEKI---DRKSIFSYERELARYVRSRLKEVRGMQLVNESL---EDSPIISFR----LGNIHPYDLALFLDGEGI  356 (406)
Q Consensus       287 ~~al~~~~~~---g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~---~~~~iv~~~----~~~~~~~~v~~~L~~~gI  356 (406)
T Consensus       329 ~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~Gf  406 (496)
T COG1003         329 PIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGF  406 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             99999999875778889899999847999997540--2755547887611589960566676429838999999872588


Q ss_pred             EEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9997521127889972899579999358889999999999999999971
Q gi|254781062|r  357 AIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFF  405 (406)
Q Consensus       357 ~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~~l  405 (406)
T Consensus       407 HaPT~~F---P----liV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea  448 (496)
T COG1003         407 HAPTMYF---P----LIVAGTLMIEPTESESKEELDRFIDAMIAIREEA  448 (496)
T ss_pred             CCCCCCC---C----CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8874657---5----3356504535777768899999999999999998