HHsearch alignment for GI: 254781062 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=576.45 Aligned_cols=363 Identities=29% Similarity=0.487 Sum_probs=334.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 59976688889898999999999986149866026799999999999999999998287976543346876898765432
Q gi|254781062|r 24 LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSY 103 (406)
Q Consensus 24 ~iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~ 103 (406)
T Consensus 2 ~iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiFTSG~TEsnNlaI~ 79 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADP-EEIIFTSGATESNNLAIK 79 (386)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHH
T ss_conf 625554356889899999999998753189611-557579999999999999999839997-808995698477779998
Q ss_pred HHHH--HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2344--43201344345401100001000012222322222222222221025788751023344332222222233333
Q gi|254781062|r 104 GWGA--RHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVI 181 (406)
Q Consensus 104 ~~~~--~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~~~ 181 (406)
T Consensus 80 g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ 158 (386)
T COG1104 80 GAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ 158 (386)
T ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCEEECC
T ss_conf 64876423568985887554349999999999-86697579968888972879999986388845999985026820112
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEEC
Q ss_conf 33210002344443101233200011100001100112223432223544431000256663100121145303433202
Q gi|254781062|r 182 PIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQ 261 (406)
Q Consensus 182 pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~ 261 (406)
T Consensus 159 pI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~--~~~p~i~GGgQ------ 230 (386)
T COG1104 159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQ------ 230 (386)
T ss_pred CHHHHHHHHHHCCCEEEEEHHHHCCCEECCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCC--CCCCEEECCCC------
T ss_conf 0999999999759817976133257600460215765687311213699842799987998--73744604767------
Q ss_pred CCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECCCCCCCCC-EEEEEE
Q ss_conf 4530033100000122120245664210123322222222222222222222222222-10132268521586-799980
Q gi|254781062|r 262 DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV-RGMQLVNESLEDSP-IISFRL 339 (406)
Q Consensus 262 ~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~-~g~~i~~~~~~~~~-iv~~~~ 339 (406)
T Consensus 231 --------E~g~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f 301 (386)
T COG1104 231 --------ERGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF 301 (386)
T ss_pred --------CCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEE
T ss_conf --------89978887557999999999999998-778889999999999999998509968986885457898689996
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCHHH------HHHHHHCCCC-----CEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999987896999752112------7889972899-----5799993588899999999999999999719
Q gi|254781062|r 340 GNIHPYDLALFLDGEGIAIRAGTHCA------NPLLKFLGID-----SLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406 (406)
Q Consensus 340 ~~~~~~~v~~~L~~~gI~v~~G~~ca------~~~~~~~g~~-----~~iRiS~~~~nt~edid~~i~~l~~~i~~l~ 406 (406)
T Consensus 302 ~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr 379 (386)
T COG1104 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379 (386)
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 897578999861040868733643458998714999980999688372489973799989999999999999999986