HHsearch alignment for GI: 254781062 and conserved domain: COG1104

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=576.45  Aligned_cols=363  Identities=29%  Similarity=0.487  Sum_probs=334.2

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             59976688889898999999999986149866026799999999999999999998287976543346876898765432
Q gi|254781062|r   24 LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSY  103 (406)
Q Consensus        24 ~iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~  103 (406)
T Consensus         2 ~iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~-~eIiFTSG~TEsnNlaI~   79 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADP-EEIIFTSGATESNNLAIK   79 (386)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHH
T ss_conf             625554356889899999999998753189611-557579999999999999999839997-808995698477779998


Q ss_pred             HHHH--HHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2344--43201344345401100001000012222322222222222221025788751023344332222222233333
Q gi|254781062|r  104 GWGA--RHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVI  181 (406)
Q Consensus       104 ~~~~--~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~tG~~~  181 (406)
T Consensus        80 g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~v~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQ  158 (386)
T COG1104          80 GAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQ  158 (386)
T ss_pred             HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH-HHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCEEECC
T ss_conf             64876423568985887554349999999999-86697579968888972879999986388845999985026820112


Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEEC
Q ss_conf             33210002344443101233200011100001100112223432223544431000256663100121145303433202
Q gi|254781062|r  182 PIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQ  261 (406)
Q Consensus       182 pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~  261 (406)
T Consensus       159 pI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~--~~~p~i~GGgQ------  230 (386)
T COG1104         159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQ------  230 (386)
T ss_pred             CHHHHHHHHHHCCCEEEEEHHHHCCCEECCCCCCCCCEEEEEHHHCCCCCCEEEEEECCCC--CCCCEEECCCC------
T ss_conf             0999999999759817976133257600460215765687311213699842799987998--73744604767------


Q ss_pred             CCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECCCCCCCCC-EEEEEE
Q ss_conf             4530033100000122120245664210123322222222222222222222222222-10132268521586-799980
Q gi|254781062|r  262 DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV-RGMQLVNESLEDSP-IISFRL  339 (406)
Q Consensus       262 ~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~-~g~~i~~~~~~~~~-iv~~~~  339 (406)
T Consensus       231 --------E~g~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f  301 (386)
T COG1104         231 --------ERGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF  301 (386)
T ss_pred             --------CCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEE
T ss_conf             --------89978887557999999999999998-778889999999999999998509968986885457898689996


Q ss_pred             CCCCHHHHHHHHHHCCCEEEECCHHH------HHHHHHCCCC-----CEEEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             89999999999987896999752112------7889972899-----5799993588899999999999999999719
Q gi|254781062|r  340 GNIHPYDLALFLDGEGIAIRAGTHCA------NPLLKFLGID-----SLCRASLAMYNTYEEADKFIETLKKSIQFFQ  406 (406)
Q Consensus       340 ~~~~~~~v~~~L~~~gI~v~~G~~ca------~~~~~~~g~~-----~~iRiS~~~~nt~edid~~i~~l~~~i~~l~  406 (406)
T Consensus       302 ~gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr  379 (386)
T COG1104         302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR  379 (386)
T ss_pred             CCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             897578999861040868733643458998714999980999688372489973799989999999999999999986