HHsearch alignment for GI: 254781062 and conserved domain: COG1167
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].
Probab=99.68 E-value=1.7e-16 Score=123.62 Aligned_cols=285 Identities=15% Similarity=0.194 Sum_probs=177.5
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 82879765433468768987654322344432013443454011000010000122223222222222222210257887
Q gi|254781062|r 79 FINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFK 158 (406)
Q Consensus 79 ~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~ 158 (406)
T Consensus 150 g~~~~~-~~IiiT~G~q~al~l~~~~l----~~pGd~v~vE~PtY~~~----~~~~~~~g~~~~~vp~d~~G-~~~e~le 219 (459)
T COG1167 150 GISCEP-EQIVITSGAQQALDLLLRLL----LDPGDTVLVEDPTYPGA----LQALEALGARVIPVPVDEDG-IDPEALE 219 (459)
T ss_pred CCCCCH-HHEEECCCHHHHHHHHHHHH----CCCCCEEEECCCCHHHH----HHHHHHCCCCEEEECCCCCC-CCHHHHH
T ss_conf 998883-03898064999999999984----79999999899982899----99999869947860678889-8979999
Q ss_pred HHCCC-CCCCCCC-CCCCCCCCCCCCCC---CEECCCCCCCCCCCCCCCCCCC----CCCCCHHHHCC---CCCCCCCCC
Q ss_conf 51023-3443322-22222233333332---1000234444310123320001----11000011001---122234322
Q gi|254781062|r 159 NRLTE-RTKLIAI-THMSNVLGTVIPIK---EICRIAHERNIPVLVDGSQGSV----HNFVDVQDIDC---DWYIITGHK 226 (406)
Q Consensus 159 ~~i~~-~t~lv~i-~~~~~~tG~~~pi~---~I~~~~~~~g~~~~vD~aq~~g----~~~id~~~~~~---D~~~~S~hK 226 (406)
T Consensus 220 ~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK 299 (459)
T COG1167 220 EALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSK 299 (459)
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCHHHHCCCCCEEEECCCHH
T ss_conf 99850697289978896388987459999999999999759879986774332158899834576289997899913266
Q ss_pred CCCC-CCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCC-C----CC
Q ss_conf 2354-4431000256663100121145303433202453003310000012212024566421012332222-2----22
Q gi|254781062|r 227 LYGP-SGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKID-R----KS 300 (406)
Q Consensus 227 ~~Gp-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g-~----~~ 300 (406)
T Consensus 300 ~l~PglRlG~vv~p~~~~~~~~~~k~--------------------~~~~~~s~~~Q-~~l---a~~l~-~G~~~~hl~~ 354 (459)
T COG1167 300 TLAPGLRLGYVVAPPELIEKLLRLKQ--------------------AADLGPSSLSQ-AAL---AAFLL-SGHYDRHLRR 354 (459)
T ss_pred HHCCCCCEEEEECCHHHHHHHHHHHH--------------------HHCCCCCHHHH-HHH---HHHHH-CCHHHHHHHH
T ss_conf 51467554999729999999999987--------------------62569989999-999---99997-2859999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC--EEEECCCCCCCCCEEEEEEC-CCCHHHHHHHHHHCCCEEEE-CCHHHHHHHHHCCCCC
Q ss_conf 22222222222222222221--01322685215867999808-99999999999878969997-5211278899728995
Q gi|254781062|r 301 IFSYERELARYVRSRLKEVR--GMQLVNESLEDSPIISFRLG-NIHPYDLALFLDGEGIAIRA-GTHCANPLLKFLGIDS 376 (406)
Q Consensus 301 i~~~~~~l~~~l~~~L~~~~--g~~i~~~~~~~~~iv~~~~~-~~~~~~v~~~L~~~gI~v~~-G~~ca~~~~~~~g~~~ 376 (406)
T Consensus 355 lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~--gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~----~~~~~ 428 (459)
T COG1167 355 LRREYARRRDALLEALAEYLPELATWTRPE--GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSAD----GDPRN 428 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCC--CEEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCC----CCCCC
T ss_conf 999999999999999997478763772699--558999986998888999999998699794588663578----98898
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79999358889999999999999999971
Q gi|254781062|r 377 LCRASLAMYNTYEEADKFIETLKKSIQFF 405 (406)
Q Consensus 377 ~iRiS~~~~nt~edid~~i~~l~~~i~~l 405 (406)
T Consensus 429 ~~Rl~~s~~-~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 429 GLRLSFSSP-SEEEIEEGIKRLAALLREA 456 (459)
T ss_pred EEEEECCCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 289988989-9999999999999999976