HHsearch alignment for GI: 254781062 and conserved domain: COG1982
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.61 E-value=1.9e-15 Score=116.96 Aligned_cols=293 Identities=17% Similarity=0.179 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999982879765433468768987654322344432013443454011000010000122223222222222
Q gi|254781062|r 67 DKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPI 146 (406)
Q Consensus 67 ~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~ 146 (406)
T Consensus 70 G~i~eAqe~aA~~fgAd~t--yFvvNGTS~ank~vi~a~----~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p 139 (557)
T COG1982 70 GPIKEAQELAARVFGADHT--YFVVNGTSTANKAVINAV----LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEP 139 (557)
T ss_pred CCHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHH----CCCCCEEEECCCCCHHHHHHHH----HCCCCEEEECC
T ss_conf 5388999999998688862--999778228999999860----3899989965876378888998----74883278417
Q ss_pred C--C----CCCCHHHHHHHHCCC--CC-CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC-----CCCCH
Q ss_conf 2--2----221025788751023--34-433222222223333333210002344443101233200011-----10000
Q gi|254781062|r 147 D--N----QGFFHIDEFKNRLTE--RT-KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH-----NFVDV 212 (406)
Q Consensus 147 ~--~----~g~id~~~l~~~i~~--~t-~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~-----~~id~ 212 (406)
T Consensus 140 ~~np~~gi~ggI~~~~~~~al~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~ 218 (557)
T COG1982 140 SRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA 218 (557)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCHHHHHEEEEECCC-CCEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCHH
T ss_conf 7785446537869899879998471304068896485-324760599999997531866888645774335555574114
Q ss_pred HHHCCCCCCCCCCCCCC-CCCCCHHHCCCC-CCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHC
Q ss_conf 11001122234322235-444310002566-6310012114530343320245300331000001221202456642101
Q gi|254781062|r 213 QDIDCDWYIITGHKLYG-PSGIGGLYSKES-RLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVAL 290 (406)
Q Consensus 213 ~~~~~D~~~~S~hK~~G-p~G~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al 290 (406)
T Consensus 219 ~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~------------------~r~nea~~~h~STSPsY~l~ASlD~Ar 280 (557)
T COG1982 219 LNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNH------------------ERFNEALMMHQSTSPSYPLMASLDVAR 280 (557)
T ss_pred HHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCH------------------HHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 54574389810544212343667875088765778------------------999999998806795589998899999
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCEEEECCCCCC----C--------------CCE-EEEE--ECCCCHHH
Q ss_conf 23322222222---22222222222222222210132268521----5--------------867-9998--08999999
Q gi|254781062|r 291 DYVEKIDRKSI---FSYERELARYVRSRLKEVRGMQLVNESLE----D--------------SPI-ISFR--LGNIHPYD 346 (406)
Q Consensus 291 ~~~~~~g~~~i---~~~~~~l~~~l~~~L~~~~g~~i~~~~~~----~--------------~~i-v~~~--~~~~~~~~ 346 (406)
T Consensus 281 ~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~ 360 (557)
T COG1982 281 MQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAI 360 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHH
T ss_conf 87543347888888999999999999988764886402665557753322212234454203660799965778973999
Q ss_pred HHHHHHHCCCEEE-ECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999987896999-7521127889972899579999358889999999999999
Q gi|254781062|r 347 LALFLDGEGIAIR-AGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLK 399 (406)
Q Consensus 347 v~~~L~~~gI~v~-~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~ 399 (406)
T Consensus 361 v~~~L~e~gii~e~~~d~-----------~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 361 VAKYLREHGIIPEETGDY-----------SNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred HHHHHHHCCCEEEECCCC-----------EEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999999758814531773-----------2467863241067899999999987