HHsearch alignment for GI: 254781062 and conserved domain: COG1982

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].
Probab=99.61  E-value=1.9e-15  Score=116.96  Aligned_cols=293  Identities=17%  Similarity=0.179  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999982879765433468768987654322344432013443454011000010000122223222222222
Q gi|254781062|r   67 DKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPI  146 (406)
Q Consensus        67 ~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~  146 (406)
T Consensus        70 G~i~eAqe~aA~~fgAd~t--yFvvNGTS~ank~vi~a~----~~~GD~VLvdRN~HKSi~~gli----laGa~Pvyl~p  139 (557)
T COG1982          70 GPIKEAQELAARVFGADHT--YFVVNGTSTANKAVINAV----LTPGDKVLVDRNCHKSIHHGLI----LAGATPVYLEP  139 (557)
T ss_pred             CCHHHHHHHHHHHHCCCCE--EEEECCCCHHHHHHHHHH----CCCCCEEEECCCCCHHHHHHHH----HCCCCEEEECC
T ss_conf             5388999999998688862--999778228999999860----3899989965876378888998----74883278417


Q ss_pred             C--C----CCCCHHHHHHHHCCC--CC-CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC-----CCCCH
Q ss_conf             2--2----221025788751023--34-433222222223333333210002344443101233200011-----10000
Q gi|254781062|r  147 D--N----QGFFHIDEFKNRLTE--RT-KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH-----NFVDV  212 (406)
Q Consensus       147 ~--~----~g~id~~~l~~~i~~--~t-~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~-----~~id~  212 (406)
T Consensus       140 ~~np~~gi~ggI~~~~~~~al~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~  218 (557)
T COG1982         140 SRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESA  218 (557)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCHHHHHEEEEECCC-CCEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCHH
T ss_conf             7785446537869899879998471304068896485-324760599999997531866888645774335555574114


Q ss_pred             HHHCCCCCCCCCCCCCC-CCCCCHHHCCCC-CCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHC
Q ss_conf             11001122234322235-444310002566-6310012114530343320245300331000001221202456642101
Q gi|254781062|r  213 QDIDCDWYIITGHKLYG-PSGIGGLYSKES-RLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVAL  290 (406)
Q Consensus       213 ~~~~~D~~~~S~hK~~G-p~G~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al  290 (406)
T Consensus       219 ~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~------------------~r~nea~~~h~STSPsY~l~ASlD~Ar  280 (557)
T COG1982         219 LNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNH------------------ERFNEALMMHQSTSPSYPLMASLDVAR  280 (557)
T ss_pred             HHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCH------------------HHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             54574389810544212343667875088765778------------------999999998806795589998899999


Q ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCEEEECCCCCC----C--------------CCE-EEEE--ECCCCHHH
Q ss_conf             23322222222---22222222222222222210132268521----5--------------867-9998--08999999
Q gi|254781062|r  291 DYVEKIDRKSI---FSYERELARYVRSRLKEVRGMQLVNESLE----D--------------SPI-ISFR--LGNIHPYD  346 (406)
Q Consensus       291 ~~~~~~g~~~i---~~~~~~l~~~l~~~L~~~~g~~i~~~~~~----~--------------~~i-v~~~--~~~~~~~~  346 (406)
T Consensus       281 ~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~  360 (557)
T COG1982         281 MQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAI  360 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHH
T ss_conf             87543347888888999999999999988764886402665557753322212234454203660799965778973999


Q ss_pred             HHHHHHHCCCEEE-ECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9999987896999-7521127889972899579999358889999999999999
Q gi|254781062|r  347 LALFLDGEGIAIR-AGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLK  399 (406)
Q Consensus       347 v~~~L~~~gI~v~-~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~  399 (406)
T Consensus       361 v~~~L~e~gii~e~~~d~-----------~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         361 VAKYLREHGIIPEETGDY-----------SNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             HHHHHHHCCCEEEECCCC-----------EEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             999999758814531773-----------2467863241067899999999987