HHsearch alignment for GI: 254781062 and conserved domain: COG2008
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism].
Probab=99.88 E-value=5.2e-23 Score=164.66 Aligned_cols=321 Identities=15% Similarity=0.183 Sum_probs=196.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99766888898989999999999861498660267999999999999999999982879765433468768987654322
Q gi|254781062|r 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYG 104 (406)
Q Consensus 25 iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~ 104 (406)
T Consensus 2 ~~f~SDn~~g~~~~m~eam~~a~~-~~~~~Y-G~D-------~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~ 69 (342)
T COG2008 2 IDFRSDNVAGPTPEMREALAAANA-VGDDVY-GED-------PTTNALEQRIAELFGK---EAALFVPSGTQANQLALAA 69 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCC-CCCCCC-CCC-------HHHHHHHHHHHHHHCC---CEEEEECCCCHHHHHHHHH
T ss_conf 735557667879999999985524-578777-888-------8999999999998577---4499926843888999998
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC------C-CCCCCCCCCCCC
Q ss_conf 344432013443454011000010000122223222222222222210257887510233------4-433222222223
Q gi|254781062|r 105 WGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTER------T-KLIAITHMSNVL 177 (406)
Q Consensus 105 ~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~------t-~lv~i~~~~~~t 177 (406)
T Consensus 70 ~----~~~~~~vi~~~~aHi~~-~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~ 143 (342)
T COG2008 70 H----CQPGESVICHETAHIYT-DECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EG 143 (342)
T ss_pred H----CCCCCEEEEECCCCCEE-CCCCCHHHHCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC-CC
T ss_conf 6----48997699852531202-356758887388543047987787399999976367776558875079861367-78
Q ss_pred CCCCC---CCCEECCCCCCCCCCCCCCCC---CCCCCCCCHHHH--CCCCCCCCCCC-CCCCCCCCHHHCCCCCCCCCEE
Q ss_conf 33333---321000234444310123320---001110000110--01122234322-2354443100025666310012
Q gi|254781062|r 178 GTVIP---IKEICRIAHERNIPVLVDGSQ---GSVHNFVDVQDI--DCDWYIITGHK-LYGPSGIGGLYSKESRLNEMDP 248 (406)
Q Consensus 178 G~~~p---i~~I~~~~~~~g~~~~vD~aq---~~g~~~id~~~~--~~D~~~~S~hK-~~Gp~G~G~l~~~~~~~~~~~p 248 (406)
T Consensus 144 GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~g-Aiv~gn~~~~~~a~~ 222 (342)
T COG2008 144 GTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVG-AIVFGNRDFAKRARR 222 (342)
T ss_pred CEECCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHCCCCHHHHHHHCCEEEEECCCCCCCEEE-EEEECCHHHHHHHHH
T ss_conf 6664899999999999980995440408898899873988899874288999913147752132-589738999999899
Q ss_pred E--CCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 1--14530343320245300331000001221202456642101233222222222222222222222222221013226
Q gi|254781062|r 249 F--MGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVN 326 (406)
Q Consensus 249 ~--~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~ 326 (406)
T Consensus 223 ~rK~~Ggl~-----------------------~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~ 278 (342)
T COG2008 223 WRKRAGGLM-----------------------RKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAF 278 (342)
T ss_pred HHHHHCCCH-----------------------HHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
T ss_conf 999865627-----------------------66548999-999997315888887888999999997653268943436
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8521586799980899999999999878969997521127889972899-579999358889999999999999999
Q gi|254781062|r 327 ESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGID-SLCRASLAMYNTYEEADKFIETLKKSI 402 (406)
Q Consensus 327 ~~~~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~-~~iRiS~~~~nt~edid~~i~~l~~~i 402 (406)
T Consensus 279 ~~--~tN~vf~~l~~---~~i-~~l~~~~~~~~~~~--------~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 279 PV--ETNMVFVRLPE---SAI-EALRLAGALFYRGV--------LIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred CC--CCCEEEEECCH---HHH-HHHHHHCHHHEEEE--------ECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 77--66279997776---788-99975152120012--------215777558998502499999999999999964