HHsearch alignment for GI: 254781062 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.65 E-value=3.2e-07 Score=65.12 Aligned_cols=340 Identities=20% Similarity=0.220 Sum_probs=167.4
Q ss_pred CEEEEE---CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 659976---68888989899999999998614986602679999999999999999999828797654334687689876
Q gi|254781062|r 23 PLIYFD---NAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN 99 (406)
Q Consensus 23 ~~iYld---~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n 99 (406)
T Consensus 45 edv~IDLLTDSGTgams~~qwaamm~G-DEAYag-srs~~~-----------L~~avkdifGfq---~~iPthQGRgAE~ 108 (471)
T COG3033 45 EDVFIDLLTDSGTGAMTDKQWAAMMRG-DEAYAG-SRSYYA-----------LADAVKDIFGFQ---YTIPTHQGRGAEN 108 (471)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHCC-CHHHCC-CCCHHH-----------HHHHHHHHCCCE---EEEECCCCCCHHH
T ss_conf 645788530588662538999988525-354315-533899-----------999999861734---6512557731777
Q ss_pred HHHHHHH-HHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHCCC----C
Q ss_conf 5432234-443201344345401100001000012222322222222222----------221025788751023----3
Q gi|254781062|r 100 LVSYGWG-ARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDN----------QGFFHIDEFKNRLTE----R 164 (406)
Q Consensus 100 ~~~~~~~-~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~----------~g~id~~~l~~~i~~----~ 164 (406)
T Consensus 109 Il~~i~ik~~~~~pg~~~~~~sN~~F---dTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~n 185 (471)
T COG3033 109 ILIPILIKKGEQEPGSKMVAFSNYHF---DTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADN 185 (471)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEE---CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 88999841032067741012345312---022677875487021231665566455688778657999999998737145
Q ss_pred CCCCCCCCCCCCC-CC---CCCCCCEECCCCCCCCCCCCCCCCCC-----------CCCCCCHHHH------CCCCCCCC
Q ss_conf 4433222222223-33---33332100023444431012332000-----------1110000110------01122234
Q gi|254781062|r 165 TKLIAITHMSNVL-GT---VIPIKEICRIAHERNIPVLVDGSQGS-----------VHNFVDVQDI------DCDWYIIT 223 (406)
Q Consensus 165 t~lv~i~~~~~~t-G~---~~pi~~I~~~~~~~g~~~~vD~aq~~-----------g~~~id~~~~------~~D~~~~S 223 (406)
T Consensus 186 vp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS 265 (471)
T COG3033 186 VPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMS 265 (471)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEE
T ss_conf 86899999626667871207769999999987199589644566542022342476555460999999998651243020
Q ss_pred CCC-CCCCCCCCHHHCCCCCC----CCCEEECCCCEEEEEEECCCCCCCCCHHC-CCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 322-23544431000256663----10012114530343320245300331000-0012212024566421012332222
Q gi|254781062|r 224 GHK-LYGPSGIGGLYSKESRL----NEMDPFMGGSEMIADVTQDMVTYADLPYR-FEPGTPPISQAIALGVALDYVEKID 297 (406)
Q Consensus 224 ~hK-~~Gp~G~G~l~~~~~~~----~~~~p~~~g~~~~~~~~~~~~~~~~~~~r-~e~Gt~~~~~~~al~~al~~~~~~g 297 (406)
T Consensus 266 ~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~-------V~~eG~~tYGgl~Grdme------alAvGL~e~~~------ 325 (471)
T COG3033 266 AKKDGLVNMG-GFLCFKDDSFFDVYEECRTLV-------VVQEGFPTYGGLAGRDME------ALAVGLREGVN------ 325 (471)
T ss_pred CCCCCEECCC-CEEEECCCCHHHHHHHHHHHE-------EEECCCCCCCCCCCHHHH------HHHHHHHHHCC------
T ss_conf 2545242246-578864750778999987665-------751266665764423289------99978887427------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEE--ECCC-----CHHHHHHHH-HHCCCEEE-ECCHHHHHH
Q ss_conf 22222222222222222222221013226852158679998--0899-----999999999-87896999-752112788
Q gi|254781062|r 298 RKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFR--LGNI-----HPYDLALFL-DGEGIAIR-AGTHCANPL 368 (406)
Q Consensus 298 ~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~iv~~~--~~~~-----~~~~v~~~L-~~~gI~v~-~G~~ca~~~ 368 (406)
T Consensus 326 ~~yl-~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd 403 (471)
T COG3033 326 FDYL-AHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRD 403 (471)
T ss_pred CHHH-HHHHHHHHHHHHHHHHC-CCEEEECCCCCEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHHCEEEEEEECEECCCC
T ss_conf 0899-99999999999888865-973685278716996345636778824484778999999983823664201111558
Q ss_pred HHHCCC-----CCEEEEEECCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 997289-----957999935888-999999999999999997
Q gi|254781062|r 369 LKFLGI-----DSLCRASLAMYN-TYEEADKFIETLKKSIQF 404 (406)
Q Consensus 369 ~~~~g~-----~~~iRiS~~~~n-t~edid~~i~~l~~~i~~ 404 (406)
T Consensus 404 ~-ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 404 P-KTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred C-CCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7-7643478712304674351114566799999999999854