HHsearch alignment for GI: 254781062 and conserved domain: PRK01278
>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.80 E-value=1.7e-18 Score=136.17 Aligned_cols=328 Identities=17% Similarity=0.199 Sum_probs=194.9
Q ss_pred EEEEECCC------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 59976688------889898999999999986149866026799999999999999999998287976543346876898
Q gi|254781062|r 24 LIYFDNAA------SAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATES 97 (406)
Q Consensus 24 ~iYld~a~------~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~ 97 (406)
T Consensus 31 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~l~~~~~--~~~--~~~~---~~la~~L~~~---~~~d~v~f~~sGsEA 100 (389)
T PRK01278 31 ERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN--LYR--IPEQ---ERLAERLVEN---SFADKVFFTNSGAEA 100 (389)
T ss_pred CEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCCCCC--CCC--CHHH---HHHHHHHHHC---CCCCEEEEECCHHHH
T ss_conf 99999360988612289978999999999865667656--536--8799---9999997533---676879996874899
Q ss_pred HHHHHHHHHHHHHH---CC-CCCCCCHHHHHHHHHHCCCCCC----CCCCC-----CCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 76543223444320---13-4434540110000100001222----23222-----222222222210257887510233
Q gi|254781062|r 98 INLVSYGWGARHIS---TG-DEIVLSVMEHHSNIIPWYFLRQ----RRGAS-----LVWVPIDNQGFFHIDEFKNRLTER 164 (406)
Q Consensus 98 ~n~~~~~~~~~~~~---~g-d~Vi~s~~eh~s~~~~~~~~~~----~~G~~-----v~~i~~~~~g~id~~~l~~~i~~~ 164 (406)
T Consensus 101 ve~AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t~~~~s~sg~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~~~~~ 175 (389)
T PRK01278 101 VECAIKTARRYQYGKGHPERYRIITFEGAFHGRTLATIAATGQEKYLEGFGPLVDGFDQVPF-----GDIEALKAAITPN 175 (389)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCC-----CCHHHHHHHHCCC
T ss_conf 99999999998885399997289998888886763511357884433666899888246778-----9789999862888
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCC-CCCCC--CCHH--HHCCCCCCCCCCC-CCCCCCCC
Q ss_conf 443322222222333333----3210002344443101233200-01110--0001--1001122234322-23544431
Q gi|254781062|r 165 TKLIAITHMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQG-SVHNF--VDVQ--DIDCDWYIITGHK-LYGPSGIG 234 (406)
Q Consensus 165 t~lv~i~~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~-~g~~~--id~~--~~~~D~~~~S~hK-~~Gp~G~G 234 (406)
T Consensus 176 iAaviiEPi~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGRtG~~fa~e~~gv~PDiv~~g--K~l~gG~P~s 253 (389)
T PRK01278 176 TAAILIEPIQGEGGIRPLPDEFLKGLRQLCDENGLLLIFDEVQCGVGRTGKLFAHEWAGVTPDIMALA--KGIGGGFPLG 253 (389)
T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEC--CCCCCCCCEE
T ss_conf 17999968888889606999999999999986065387421000777556642200367689867870--1246887427
Q ss_pred HHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00025666310012114530343320245300331000001221202456642101233222222222222222222222
Q gi|254781062|r 235 GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRS 314 (406)
Q Consensus 235 ~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~ 314 (406)
T Consensus 254 av~~~~ei~~~~~~g~~~-----------~T~----------~gnp~~~aaala~L~~i~~---~~l~~~v~~~G~~l~~ 309 (389)
T PRK01278 254 ACLATEEAAKGMTPGTHG-----------STY----------GGNPLAMAVGNAVLDVVLA---PGFLDNVQKMGLYLKQ 309 (389)
T ss_pred EEEECHHHHHHCCCCCCC-----------CCC----------CCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHH
T ss_conf 998638878543688767-----------799----------9799999999999999986---4699999999999999
Q ss_pred CCCCCCE-E-EECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
Q ss_conf 2222210-1-3226852158679998089999999999987896999752112788997289957999935888999999
Q gi|254781062|r 315 RLKEVRG-M-QLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEAD 392 (406)
Q Consensus 315 ~L~~~~g-~-~i~~~~~~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid 392 (406)
T Consensus 310 ~L~~l~~~~p~~i~~vRG~Gl~~gie~~-~~~~~i~~~~~~~Gll~~~~-----------g-~~~lr~~PpL~it~~ei~ 376 (389)
T PRK01278 310 KLESLVDRFPDVIEEVRGEGLMLGLKCV-VPSRDLVAALRDEGLLTVPA-----------G-DNVVRLLPPLIITEEEID 376 (389)
T ss_pred HHHHHHHHCCCCEEEEEEEEEEEEEEEC-CCHHHHHHHHHHCCCEEEEC-----------C-CCEEEEECCCCCCHHHHH
T ss_conf 9999987686713556450369999945-88999999999799389727-----------9-997999788139899999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999971
Q gi|254781062|r 393 KFIETLKKSIQFF 405 (406)
Q Consensus 393 ~~i~~l~~~i~~l 405 (406)
T Consensus 377 ~~~~~l~~al~~v 389 (389)
T PRK01278 377 EALERLERAAESL 389 (389)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999759