HHsearch alignment for GI: 254781062 and conserved domain: PRK04612
>PRK04612 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=99.75 E-value=9.2e-17 Score=125.26 Aligned_cols=331 Identities=12% Similarity=0.113 Sum_probs=187.2
Q ss_pred CEEEEECCCC------CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 6599766888------8989899999999998614986602679999999999999999999828797654334687689
Q gi|254781062|r 23 PLIYFDNAAS------AQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATE 96 (406)
Q Consensus 23 ~~iYld~a~~------~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te 96 (406)
T Consensus 39 G~~ylD~~sg~~~~~lGh~hp~v~~Ai~~Q~~~l~~~~~---~~~~~---~~~~lae-~L~~~~~--~~~~v~f~~SGsE 109 (408)
T PRK04612 39 GREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTSN---VFFSA---PPLKLAE-ELVTASR--FAEKVFLCNSGTE 109 (408)
T ss_pred CCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC---CCCCH---HHHHHHH-HHHHCCC--CCCEEEECCCHHH
T ss_conf 899999245077512258989999999999865257667---52265---8999999-9972268--8766997187468
Q ss_pred HHHHHHHHHHHHHHH----CCCC-CCCCHHHHHHHHHHCCCCCC----CCCC-----CCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 876543223444320----1344-34540110000100001222----2322-----22222222222102578875102
Q gi|254781062|r 97 SINLVSYGWGARHIS----TGDE-IVLSVMEHHSNIIPWYFLRQ----RRGA-----SLVWVPIDNQGFFHIDEFKNRLT 162 (406)
Q Consensus 97 ~~n~~~~~~~~~~~~----~gd~-Vi~s~~eh~s~~~~~~~~~~----~~G~-----~v~~i~~~~~g~id~~~l~~~i~ 162 (406)
T Consensus 110 AvE~AlKlAr~y~~~~G~~~~k~~ii~~~~syHG~t~~als~t~~~~~~~~~~p~p~~~~~~~~-----~d~~~le~~~~ 184 (408)
T PRK04612 110 ANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMA 184 (408)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEECCC-----CCHHHHHHHCC
T ss_conf 9999999999998732887777699998585259876742256784334688899885254366-----74999997156
Q ss_pred C-CCCCCCCCCCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCC-CCCCC--CCHH--HHCCCCCCCCCCC-CCCCC
Q ss_conf 3-3443322222222333333----3210002344443101233200-01110--0001--1001122234322-23544
Q gi|254781062|r 163 E-RTKLIAITHMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQG-SVHNF--VDVQ--DIDCDWYIITGHK-LYGPS 231 (406)
Q Consensus 163 ~-~t~lv~i~~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~-~g~~~--id~~--~~~~D~~~~S~hK-~~Gp~ 231 (406)
T Consensus 185 ~~~iAAvivEPi~g~gG~~~~~~~yl~~l~~lc~~~gillI~DEV~TGfGRtG~~fa~~~~~v~PDii~~g--Kglg~G~ 262 (408)
T PRK04612 185 GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA--KALGGGF 262 (408)
T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEE--HHHCCCC
T ss_conf 99789999978678888306899999999999975694698501224788676203555128999989972--3223887
Q ss_pred CCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43100025666310012114530343320245300331000001221202456642101233222222222222222222
Q gi|254781062|r 232 GIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARY 311 (406)
Q Consensus 232 G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~ 311 (406)
T Consensus 263 Pl~av~~~~~i~~~~~~~~h~-----------~T~----------~gnpla~aaala~L~~i~~---~~l~~~~~~~g~~ 318 (408)
T PRK04612 263 PIGAMLAGPKVAETMQFGAHG-----------TTF----------GGNPLAAAVARVALRKLAS---PQIAANVARQSAA 318 (408)
T ss_pred CEEEEEECHHHHHHCCCCCCC-----------CCC----------CCCHHHHHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_conf 628999868888514689978-----------888----------7359999999999999986---6699999999999
Q ss_pred CCCCCCCCCE-EEECCCCCCCCCEEEEEECC-C--CHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 2222222210-13226852158679998089-9--999999999878969997521127889972899579999358889
Q gi|254781062|r 312 VRSRLKEVRG-MQLVNESLEDSPIISFRLGN-I--HPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNT 387 (406)
Q Consensus 312 l~~~L~~~~g-~~i~~~~~~~~~iv~~~~~~-~--~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt 387 (406)
T Consensus 319 l~~~L~~l~~~~~~i~~vRG~GLm~giel~~~~~~~~~~i~~~~~~~Gll~~~~-----------g-~~~irl~PPL~it 386 (408)
T PRK04612 319 LRAGLEALNAEFGVFAQIRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----------G-PDVLRFVPALNLT 386 (408)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEECC-----------C-CCEEEEECCCCCC
T ss_conf 999999987407988832204469999954788626999999999789199317-----------9-9979996883388
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999971
Q gi|254781062|r 388 YEEADKFIETLKKSIQFF 405 (406)
Q Consensus 388 ~edid~~i~~l~~~i~~l 405 (406)
T Consensus 387 ~~eide~l~~l~~al~~~ 404 (408)
T PRK04612 387 DAELADGLARLRLALAAY 404 (408)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999