HHsearch alignment for GI: 254781062 and conserved domain: PRK13355
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional.
Probab=99.86 E-value=2.3e-21 Score=154.30 Aligned_cols=340 Identities=17% Similarity=0.267 Sum_probs=202.3
Q ss_pred CCCEEEEEC---CCCC-CCCHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 786599766---8888-989899999999998614-98660267999999999999999999982879765433468768
Q gi|254781062|r 21 KKPLIYFDN---AASA-QKPQDVIDSIMCTYSHEY-ANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT 95 (406)
Q Consensus 21 ~~~~iYld~---a~~~-~~~~~V~~a~~~~~~~~~-~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~T 95 (406)
T Consensus 145 g~~i~klnignpa~fgf~~p~~~~~~~~~~~~~~~gy~~s~g~~-~ar~a~~~~~----q~~~~~~~~-~~di~~gnGvS 218 (518)
T PRK13355 145 GTHILKLNIGNPAPFGFRTPDEVVYDMAHQLPDTEGYSPSKGLF-SARKAIMQYA----QLKNIPNVD-IDDIYTGNGVS 218 (518)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHH----HHCCCCCCC-HHHEEECCCHH
T ss_conf 88167634789886688894899999997372345875455756-8999999999----976999987-40356547767
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98765432234443201344345401100001000012222322222222222--2210257887510233443322222
Q gi|254781062|r 96 ESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDN--QGFFHIDEFKNRLTERTKLIAITHM 173 (406)
Q Consensus 96 e~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~--~g~id~~~l~~~i~~~t~lv~i~~~ 173 (406)
T Consensus 219 E~i~~am~Al----ln~GDeVLiP~P~YPl----yta~v~L~Gg~pV~y~~dEe~~w~PDiedLe~kIT~kTKAIVInNP 290 (518)
T PRK13355 219 ELINLSMSAL----LDDGDEVLVPSPDYPL----WTACVNLAGGTAVHYRCDEESEWYPDIDDIRSKITSKTKAIVIINP 290 (518)
T ss_pred HHHHHHHHHH----CCCCCEEEECCCCCCC----HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 9999999983----6899989825999977----8999886098788987452217788999998535715579999689
Q ss_pred CCCCCCCCC---CCCEECCCCCCCCCCCCCCCCC----CCCCCCCHHHHCCCC--CCCCC-CCCCCCCC--CCHHHCCCC
Q ss_conf 222333333---3210002344443101233200----011100001100112--22343-22235444--310002566
Q gi|254781062|r 174 SNVLGTVIP---IKEICRIAHERNIPVLVDGSQG----SVHNFVDVQDIDCDW--YIITG-HKLYGPSG--IGGLYSKES 241 (406)
Q Consensus 174 ~~~tG~~~p---i~~I~~~~~~~g~~~~vD~aq~----~g~~~id~~~~~~D~--~~~S~-hK~~Gp~G--~G~l~~~~~ 241 (406)
T Consensus 291 NNPTGAVyS~E~LeeIaeiArehdLiIISDEIY~~LvYDg~~h~Siasla~d~~~It~NG~SKsyaMtGWRiGwmv~sG~ 370 (518)
T PRK13355 291 NNPTGALYPKEVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGFRAGWMMLSGN 370 (518)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCEECCEEEEEEEEECCC
T ss_conf 89888788999999999999985969996230221006898630476708864599988776663322011366542485
Q ss_pred --CCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
Q ss_conf --631001211453034332024530033100000122120245664210123322222222--2222222222222222
Q gi|254781062|r 242 --RLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSI--FSYERELARYVRSRLK 317 (406)
Q Consensus 242 --~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i--~~~~~~l~~~l~~~L~ 317 (406)
T Consensus 371 ~~~a~~---~Ie~l~~-------------La-s~~-lcsnvpaQ~A~~aAL~g~qs~~-d~~~~~~rl~erRdlv~e~Ln 431 (518)
T PRK13355 371 KRHAKD---YIEGLNM-------------LA-NMR-MCSNVPAQSVVQTALGGHQSVK-DYTVPGGRLYDQRELVYDMLN 431 (518)
T ss_pred HHHHHH---HHHHHHH-------------HH-HCC-CCCCHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999---9999999-------------86-045-6636899999999862876489-999999999999999999983
Q ss_pred CCCEEEECCCCCCCCCEEEEE-E--C--CC-CHHHH-HHHHHHCCCEEEECCHHHHHHHHHCC--CCCEEEEEECCCCCH
Q ss_conf 221013226852158679998-0--8--99-99999-99998789699975211278899728--995799993588899
Q gi|254781062|r 318 EVRGMQLVNESLEDSPIISFR-L--G--NI-HPYDL-ALFLDGEGIAIRAGTHCANPLLKFLG--IDSLCRASLAMYNTY 388 (406)
Q Consensus 318 ~~~g~~i~~~~~~~~~iv~~~-~--~--~~-~~~~v-~~~L~~~gI~v~~G~~ca~~~~~~~g--~~~~iRiS~~~~nt~ 388 (406)
T Consensus 432 ~IpGvscvkP~---GAFYlFPkID~~~~~i~dDeeFal~LL~Ee~VlVVPGsa--------FG~~~pghfRIsya--ps~ 498 (518)
T PRK13355 432 AIPGISAVKPK---AAFYIFPKIDVKIFNIHSDEQFALDLLHEKHILISHGGA--------FNWDKPDHFRVVYL--PRL 498 (518)
T ss_pred CCCCCEECCCC---EEEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCC--------CCCCCCCEEEEEEC--CCH
T ss_conf 59997658998---158995541534489989999999999858999958754--------48999897999927--999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999719
Q gi|254781062|r 389 EEADKFIETLKKSIQFFQ 406 (406)
Q Consensus 389 edid~~i~~l~~~i~~l~ 406 (406)
T Consensus 499 e~L~EA~~RI~~FL~~yr 516 (518)
T PRK13355 499 GMLEETMDELDDFFSYYR 516 (518)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999865