HHsearch alignment for GI: 254781062 and conserved domain: PRK13578
>PRK13578 ornithine decarboxylase; Provisional.
Probab=99.55 E-value=3.6e-14 Score=108.93 Aligned_cols=300 Identities=15% Similarity=0.174 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCC
Q ss_conf 99999999999828797654334-687689876543223444320134434540110000100-0012222322222222
Q gi|254781062|r 68 KYEKARDKVRRFINASSVKEIIF-TRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIP-WYFLRQRRGASLVWVP 145 (406)
Q Consensus 68 ~~~~aR~~ia~~lga~~~~~v~f-t~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~-~~~~~~~~G~~v~~i~ 145 (406)
T Consensus 175 ~~~eAq~~AA~~FGAD~---TyFvvNGTS~~nk~v~~a~----~~pGD~VLvdRN~HKSv~~GALI----lsGA~PVYl~ 243 (720)
T PRK13578 175 AAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNAL----LTPGDLVLFDRNNHKSNHHGALI----QAGATPVYLE 243 (720)
T ss_pred CHHHHHHHHHHHHCCCE---EEEEECCCHHHHHHHHHHH----CCCCCEEEECCCCHHHHHHHHHH----HCCCEEEEEC
T ss_conf 44799999999849982---6999577108899999974----58999999656435777778898----6697679966
Q ss_pred CCCC--C---CCH-----HHHHHHHCCC---------CC-CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 2222--2---102-----5788751023---------34-4332222222233333332100023444431012332000
Q gi|254781062|r 146 IDNQ--G---FFH-----IDEFKNRLTE---------RT-KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205 (406)
Q Consensus 146 ~~~~--g---~id-----~~~l~~~i~~---------~t-~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~ 205 (406)
T Consensus 244 p~rN~~GiiggI~~~~f~~~~i~~~I~~~~~~~a~~~~p~~~aVit~~-TYdGi~yn~~~I~~~i~~~~~~ilfDEAw~~ 322 (720)
T PRK13578 244 TARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAIIQLG-TYDGTIYNARQVVDKIGHLCDYILFDSAWVG 322 (720)
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHCHHHHCCCCCCEEEEEECC-CCCCEEECHHHHHHHHHHHCCEEEEECCHHH
T ss_conf 646756511674857527577898887436333123488618999468-7535423499999998640783898511021
Q ss_pred C--CCCC--C----HHHHCCC----CCCCCCCCCCC-CCCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHC
Q ss_conf 1--1100--0----0110011----22234322235-4443100025666310012114530343320245300331000
Q gi|254781062|r 206 V--HNFV--D----VQDIDCD----WYIITGHKLYG-PSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYR 272 (406)
Q Consensus 206 g--~~~i--d----~~~~~~D----~~~~S~hK~~G-p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r 272 (406)
T Consensus 323 ~~~F~P~~~d~~p~~l~~gaddp~i~vtQStHK~LaafSQaS~IHvkd~hI~g~~r~---------v~~~rf--n~a~mm 391 (720)
T PRK13578 323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARY---------CPHKRF--NNAFML 391 (720)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCHHHEEEECCCCCCCCCCC---------CCHHHH--HHHHHH
T ss_conf 443285311246433345877765046630655544322221012245434666566---------788999--999987
Q ss_pred CCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCC-----------CCCCCCCCCC-----------------CCC-C---
Q ss_conf 0012212024566421012332-22222222222-----------2222222222-----------------222-2---
Q gi|254781062|r 273 FEPGTPPISQAIALGVALDYVE-KIDRKSIFSYE-----------RELARYVRSR-----------------LKE-V--- 319 (406)
Q Consensus 273 ~e~Gt~~~~~~~al~~al~~~~-~~g~~~i~~~~-----------~~l~~~l~~~-----------------L~~-~--- 319 (406)
T Consensus 392 h~STSPsY~L~ASLDv~A~m~~g~~G~-~L~~e~i~~aie~Rk~il~~~~~~k~~~p~~v~g~~~~~~~~e~l~~d~~~w 470 (720)
T PRK13578 392 HASTSPFYPLFAALDVNAKMHEGESGR-RLWMDCVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF 470 (720)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHC
T ss_conf 707880899999879999997312145-8999999999999999986544422557521268603548888861250102
Q ss_pred ---C-----EEEECCCCCC-CCC-EEEEEEC------------CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCE
Q ss_conf ---1-----0132268521-586-7999808------------9999999999987896999752112788997289957
Q gi|254781062|r 320 ---R-----GMQLVNESLE-DSP-IISFRLG------------NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSL 377 (406)
Q Consensus 320 ---~-----g~~i~~~~~~-~~~-iv~~~~~------------~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~ 377 (406)
T Consensus 471 ~~~Pg~~WHGf~g~~~~~~~lDP~Klti~tPGi~~~~g~~~~~GIpA~il~~yLre~gIvvEkt-----------dl-~~ 538 (720)
T PRK13578 471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGVPATILANYLRENGIVPEKC-----------DL-NS 538 (720)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEC-----------CC-CE
T ss_conf 4688742246555576634226737998536745566542136875899999998769079854-----------77-50
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99993588899999999999999999
Q gi|254781062|r 378 CRASLAMYNTYEEADKFIETLKKSIQ 403 (406)
Q Consensus 378 iRiS~~~~nt~edid~~i~~l~~~i~ 403 (406)
T Consensus 539 ILfL~T~G~t~~k~~~Lv~aL~~fe~ 564 (720)
T PRK13578 539 ILFLLTPAEDMAKLQQLVAMLARFEK 564 (720)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 79997267888999999999999997