HHsearch alignment for GI: 254781062 and conserved domain: PRK13578

>PRK13578 ornithine decarboxylase; Provisional.
Probab=99.55  E-value=3.6e-14  Score=108.93  Aligned_cols=300  Identities=15%  Similarity=0.174  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCC
Q ss_conf             99999999999828797654334-687689876543223444320134434540110000100-0012222322222222
Q gi|254781062|r   68 KYEKARDKVRRFINASSVKEIIF-TRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIP-WYFLRQRRGASLVWVP  145 (406)
Q Consensus        68 ~~~~aR~~ia~~lga~~~~~v~f-t~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~-~~~~~~~~G~~v~~i~  145 (406)
T Consensus       175 ~~~eAq~~AA~~FGAD~---TyFvvNGTS~~nk~v~~a~----~~pGD~VLvdRN~HKSv~~GALI----lsGA~PVYl~  243 (720)
T PRK13578        175 AAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNAL----LTPGDLVLFDRNNHKSNHHGALI----QAGATPVYLE  243 (720)
T ss_pred             CHHHHHHHHHHHHCCCE---EEEEECCCHHHHHHHHHHH----CCCCCEEEECCCCHHHHHHHHHH----HCCCEEEEEC
T ss_conf             44799999999849982---6999577108899999974----58999999656435777778898----6697679966


Q ss_pred             CCCC--C---CCH-----HHHHHHHCCC---------CC-CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf             2222--2---102-----5788751023---------34-4332222222233333332100023444431012332000
Q gi|254781062|r  146 IDNQ--G---FFH-----IDEFKNRLTE---------RT-KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS  205 (406)
Q Consensus       146 ~~~~--g---~id-----~~~l~~~i~~---------~t-~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~  205 (406)
T Consensus       244 p~rN~~GiiggI~~~~f~~~~i~~~I~~~~~~~a~~~~p~~~aVit~~-TYdGi~yn~~~I~~~i~~~~~~ilfDEAw~~  322 (720)
T PRK13578        244 TARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAIIQLG-TYDGTIYNARQVVDKIGHLCDYILFDSAWVG  322 (720)
T ss_pred             CCCCCCCEECCCCHHHCCHHHHHHHHHHHCHHHHCCCCCCEEEEEECC-CCCCEEECHHHHHHHHHHHCCEEEEECCHHH
T ss_conf             646756511674857527577898887436333123488618999468-7535423499999998640783898511021


Q ss_pred             C--CCCC--C----HHHHCCC----CCCCCCCCCCC-CCCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHC
Q ss_conf             1--1100--0----0110011----22234322235-4443100025666310012114530343320245300331000
Q gi|254781062|r  206 V--HNFV--D----VQDIDCD----WYIITGHKLYG-PSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYR  272 (406)
Q Consensus       206 g--~~~i--d----~~~~~~D----~~~~S~hK~~G-p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r  272 (406)
T Consensus       323 ~~~F~P~~~d~~p~~l~~gaddp~i~vtQStHK~LaafSQaS~IHvkd~hI~g~~r~---------v~~~rf--n~a~mm  391 (720)
T PRK13578        323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARY---------CPHKRF--NNAFML  391 (720)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCHHHEEEECCCCCCCCCCC---------CCHHHH--HHHHHH
T ss_conf             443285311246433345877765046630655544322221012245434666566---------788999--999987


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCC-----------CCCCCCCCCC-----------------CCC-C---
Q ss_conf             0012212024566421012332-22222222222-----------2222222222-----------------222-2---
Q gi|254781062|r  273 FEPGTPPISQAIALGVALDYVE-KIDRKSIFSYE-----------RELARYVRSR-----------------LKE-V---  319 (406)
Q Consensus       273 ~e~Gt~~~~~~~al~~al~~~~-~~g~~~i~~~~-----------~~l~~~l~~~-----------------L~~-~---  319 (406)
T Consensus       392 h~STSPsY~L~ASLDv~A~m~~g~~G~-~L~~e~i~~aie~Rk~il~~~~~~k~~~p~~v~g~~~~~~~~e~l~~d~~~w  470 (720)
T PRK13578        392 HASTSPFYPLFAALDVNAKMHEGESGR-RLWMDCVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFF  470 (720)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHC
T ss_conf             707880899999879999997312145-8999999999999999986544422557521268603548888861250102


Q ss_pred             ---C-----EEEECCCCCC-CCC-EEEEEEC------------CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCE
Q ss_conf             ---1-----0132268521-586-7999808------------9999999999987896999752112788997289957
Q gi|254781062|r  320 ---R-----GMQLVNESLE-DSP-IISFRLG------------NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSL  377 (406)
Q Consensus       320 ---~-----g~~i~~~~~~-~~~-iv~~~~~------------~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~  377 (406)
T Consensus       471 ~~~Pg~~WHGf~g~~~~~~~lDP~Klti~tPGi~~~~g~~~~~GIpA~il~~yLre~gIvvEkt-----------dl-~~  538 (720)
T PRK13578        471 SFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGVPATILANYLRENGIVPEKC-----------DL-NS  538 (720)
T ss_pred             CCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEC-----------CC-CE
T ss_conf             4688742246555576634226737998536745566542136875899999998769079854-----------77-50


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99993588899999999999999999
Q gi|254781062|r  378 CRASLAMYNTYEEADKFIETLKKSIQ  403 (406)
Q Consensus       378 iRiS~~~~nt~edid~~i~~l~~~i~  403 (406)
T Consensus       539 ILfL~T~G~t~~k~~~Lv~aL~~fe~  564 (720)
T PRK13578        539 ILFLLTPAEDMAKLQQLVAMLARFEK  564 (720)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             79997267888999999999999997