HHsearch alignment for GI: 254781062 and conserved domain: TIGR00461
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=99.26 E-value=3.4e-11 Score=90.21 Aligned_cols=323 Identities=20% Similarity=0.232 Sum_probs=178.3
Q ss_pred HHCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCC---CC-CCCH
Q ss_conf 61498660267999999---9999999999999828797654334687-689876543223444320134---43-4540
Q gi|254781062|r 49 HEYANIHRGLHYMANAV---TDKYEKARDKVRRFINASSVKEIIFTRS-ATESINLVSYGWGARHISTGD---EI-VLSV 120 (406)
Q Consensus 49 ~~~~n~~~~~~~~~~~~---~~~~~~aR~~ia~~lga~~~~~v~ft~~-~Te~~n~~~~~~~~~~~~~gd---~V-i~s~ 120 (406)
T Consensus 532 PeF~~iHPF--~P~~Q~eGY~~lia~Le~wL~~iTG---fDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRniCLIP~ 606 (965)
T TIGR00461 532 PEFSEIHPF--APSEQVEGYQELIAQLEKWLVEITG---FDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRNICLIPV 606 (965)
T ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCC---CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 010565878--8850225899999999887521057---66244178888446678899999987605889874453077
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCC
Q ss_conf 11000010000122223222222222222210257887510---233443322222222333333-32100023444431
Q gi|254781062|r 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRL---TERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIP 196 (406)
Q Consensus 121 ~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i---~~~t~lv~i~~~~~~tG~~~p-i~~I~~~~~~~g~~ 196 (406)
T Consensus 607 SAHGTN--PAS--A~MaGm~VVpV~Cd~~GniDl~DL~~KAEq~gd~Laa~MvTYPS-ThGvfE~tI~~~~diVH~FGGq 681 (965)
T TIGR00461 607 SAHGTN--PAS--AAMAGMQVVPVKCDKDGNIDLVDLKAKAEQYGDELAAVMVTYPS-THGVFEETIREVCDIVHRFGGQ 681 (965)
T ss_pred CCCCCC--HHH--HHHCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCEEEEEEECCC-CCCCCHHHHCCEEEEEECCCCE
T ss_conf 767887--289--96169868987656999500777788887506652567750587-7664322210013114426884
Q ss_pred CCCCCCCCCCCCCC-CHHHHCCCCCCCCCCC-CCCCCC-----CCHHHCCCCCCCCCEEECCCCEEEEEE-------ECC
Q ss_conf 01233200011100-0011001122234322-235444-----310002566631001211453034332-------024
Q gi|254781062|r 197 VLVDGSQGSVHNFV-DVQDIDCDWYIITGHK-LYGPSG-----IGGLYSKESRLNEMDPFMGGSEMIADV-------TQD 262 (406)
Q Consensus 197 ~~vD~aq~~g~~~i-d~~~~~~D~~~~S~hK-~~Gp~G-----~G~l~~~~~~~~~~~p~~~g~~~~~~~-------~~~ 262 (406)
T Consensus 682 VYlDGANMNAQVGltsPgd~GADVcHLNLHKTFcIPHGGGGPgmgPIgVKsH----L~pflP~~~~~s~~~~~g~~~sig 757 (965)
T TIGR00461 682 VYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH----LIPFLPKTDVVSVVELEGESKSIG 757 (965)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCHHHHHH----CCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 7524566422336678611056343430544201268678787752224640----224588876000156531232435
Q ss_pred CCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-C---CC---CCCEE
Q ss_conf 53003310000012212024566421012332222222222222222222222222210132268-5---21---58679
Q gi|254781062|r 263 MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNE-S---LE---DSPII 335 (406)
Q Consensus 263 ~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~-~---~~---~~~iv 335 (406)
T Consensus 758 ~vSaAPy------GsAsiLpISw--~YI~MMG~eGL~kas~vAiLnaNYma~RL~d~--ypiLf~nemg~~~~vAHEcIl 827 (965)
T TIGR00461 758 AVSAAPY------GSASILPISW--MYIKMMGAEGLKKASEVAILNANYMAKRLKDY--YPILFVNEMGRDKRVAHECIL 827 (965)
T ss_pred CEECCCC------CCHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCEEEEEEE
T ss_conf 4523654------5414668899--99985220135035577756266899887610--765443115788831356763
Q ss_pred EEEE---C-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9980---8-9999999999987896999752112788997289957999935888999999999999999997
Q gi|254781062|r 336 SFRL---G-NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQF 404 (406)
Q Consensus 336 ~~~~---~-~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~~ 404 (406)
T Consensus 828 DlRplK~~~gie~~DvAKRL~DyGFHAPT~sf---P------V~GTlMvEPTESEsl~ELDRF~DAMiaI~~E 891 (965)
T TIGR00461 828 DLRPLKKKAGIEALDVAKRLIDYGFHAPTLSF---P------VAGTLMVEPTESESLEELDRFCDAMIAIKEE 891 (965)
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC---C------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 52554565176544567664115776533233---6------7874200554656631245888899999999