HHsearch alignment for GI: 254781062 and conserved domain: TIGR00461

>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=99.26  E-value=3.4e-11  Score=90.21  Aligned_cols=323  Identities=20%  Similarity=0.232  Sum_probs=178.3

Q ss_pred             HHCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCC---CC-CCCH
Q ss_conf             61498660267999999---9999999999999828797654334687-689876543223444320134---43-4540
Q gi|254781062|r   49 HEYANIHRGLHYMANAV---TDKYEKARDKVRRFINASSVKEIIFTRS-ATESINLVSYGWGARHISTGD---EI-VLSV  120 (406)
Q Consensus        49 ~~~~n~~~~~~~~~~~~---~~~~~~aR~~ia~~lga~~~~~v~ft~~-~Te~~n~~~~~~~~~~~~~gd---~V-i~s~  120 (406)
T Consensus       532 PeF~~iHPF--~P~~Q~eGY~~lia~Le~wL~~iTG---fDaislQPNsGaQGEYaGL~vIR~YheSrgE~hRniCLIP~  606 (965)
T TIGR00461       532 PEFSEIHPF--APSEQVEGYQELIAQLEKWLVEITG---FDAISLQPNSGAQGEYAGLRVIRSYHESRGEEHRNICLIPV  606 (965)
T ss_pred             CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCC---CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             010565878--8850225899999999887521057---66244178888446678899999987605889874453077


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCC
Q ss_conf             11000010000122223222222222222210257887510---233443322222222333333-32100023444431
Q gi|254781062|r  121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRL---TERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIP  196 (406)
Q Consensus       121 ~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i---~~~t~lv~i~~~~~~tG~~~p-i~~I~~~~~~~g~~  196 (406)
T Consensus       607 SAHGTN--PAS--A~MaGm~VVpV~Cd~~GniDl~DL~~KAEq~gd~Laa~MvTYPS-ThGvfE~tI~~~~diVH~FGGq  681 (965)
T TIGR00461       607 SAHGTN--PAS--AAMAGMQVVPVKCDKDGNIDLVDLKAKAEQYGDELAAVMVTYPS-THGVFEETIREVCDIVHRFGGQ  681 (965)
T ss_pred             CCCCCC--HHH--HHHCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCEEEEEEECCC-CCCCCHHHHCCEEEEEECCCCE
T ss_conf             767887--289--96169868987656999500777788887506652567750587-7664322210013114426884


Q ss_pred             CCCCCCCCCCCCCC-CHHHHCCCCCCCCCCC-CCCCCC-----CCHHHCCCCCCCCCEEECCCCEEEEEE-------ECC
Q ss_conf             01233200011100-0011001122234322-235444-----310002566631001211453034332-------024
Q gi|254781062|r  197 VLVDGSQGSVHNFV-DVQDIDCDWYIITGHK-LYGPSG-----IGGLYSKESRLNEMDPFMGGSEMIADV-------TQD  262 (406)
Q Consensus       197 ~~vD~aq~~g~~~i-d~~~~~~D~~~~S~hK-~~Gp~G-----~G~l~~~~~~~~~~~p~~~g~~~~~~~-------~~~  262 (406)
T Consensus       682 VYlDGANMNAQVGltsPgd~GADVcHLNLHKTFcIPHGGGGPgmgPIgVKsH----L~pflP~~~~~s~~~~~g~~~sig  757 (965)
T TIGR00461       682 VYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH----LIPFLPKTDVVSVVELEGESKSIG  757 (965)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCHHHHHH----CCCCCCCCCCEEEEEEEECCCCCC
T ss_conf             7524566422336678611056343430544201268678787752224640----224588876000156531232435


Q ss_pred             CCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-C---CC---CCCEE
Q ss_conf             53003310000012212024566421012332222222222222222222222222210132268-5---21---58679
Q gi|254781062|r  263 MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNE-S---LE---DSPII  335 (406)
Q Consensus       263 ~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~-~---~~---~~~iv  335 (406)
T Consensus       758 ~vSaAPy------GsAsiLpISw--~YI~MMG~eGL~kas~vAiLnaNYma~RL~d~--ypiLf~nemg~~~~vAHEcIl  827 (965)
T TIGR00461       758 AVSAAPY------GSASILPISW--MYIKMMGAEGLKKASEVAILNANYMAKRLKDY--YPILFVNEMGRDKRVAHECIL  827 (965)
T ss_pred             CEECCCC------CCHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCEEEEEEE
T ss_conf             4523654------5414668899--99985220135035577756266899887610--765443115788831356763


Q ss_pred             EEEE---C-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9980---8-9999999999987896999752112788997289957999935888999999999999999997
Q gi|254781062|r  336 SFRL---G-NIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQF  404 (406)
Q Consensus       336 ~~~~---~-~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i~~  404 (406)
T Consensus       828 DlRplK~~~gie~~DvAKRL~DyGFHAPT~sf---P------V~GTlMvEPTESEsl~ELDRF~DAMiaI~~E  891 (965)
T TIGR00461       828 DLRPLKKKAGIEALDVAKRLIDYGFHAPTLSF---P------VAGTLMVEPTESESLEELDRFCDAMIAIKEE  891 (965)
T ss_pred             CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC---C------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             52554565176544567664115776533233---6------7874200554656631245888899999999