HHsearch alignment for GI: 254781062 and conserved domain: TIGR00713

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=99.39  E-value=4.3e-13  Score=102.12  Aligned_cols=321  Identities=15%  Similarity=0.187  Sum_probs=182.2

Q ss_pred             EEEECCCC-CC-----CCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             99766888-89-----898999999999986149-866026799999999999999999998287976543346876898
Q gi|254781062|r   25 IYFDNAAS-AQ-----KPQDVIDSIMCTYSHEYA-NIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATES   97 (406)
Q Consensus        25 iYld~a~~-~~-----~~~~V~~a~~~~~~~~~~-n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~   97 (406)
T Consensus        49 ~YIDyv~swGPLILGHahp~v~~Av~e~lerG~syG~PtE---------~Ei~lA~-~i~~~v~~~t~e~vRfVnSGTEA  118 (434)
T TIGR00713        49 EYIDYVLSWGPLILGHAHPKVVEAVKEALERGTSYGAPTE---------AEILLAK-EIISRVPSVTEEMVRFVNSGTEA  118 (434)
T ss_pred             EEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH---------HHHHHHH-HHHHHCCCCCCCEEEEECCCCHH
T ss_conf             0012110000201178976899999999973012689988---------9999999-99864055546516862176488


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC-------------CCCCCCCCC------CCCCCCCCCCCHHHHHH
Q ss_conf             76543223444320134434540110000100001-------------222232222------22222222210257887
Q gi|254781062|r   98 INLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF-------------LRQRRGASL------VWVPIDNQGFFHIDEFK  158 (406)
Q Consensus        98 ~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~-------------~~~~~G~~v------~~i~~~~~g~id~~~l~  158 (406)
T Consensus       119 TMsAvRLA--RG~TGR~~IiKFeGcYHGh~D~lLv~AGSGaaT~g~CG~P~SpGvP~~~~k~Tl~~PYN-----D~~a~~  191 (434)
T TIGR00713       119 TMSAVRLA--RGFTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGSCGLPTSPGVPEDFAKLTLVLPYN-----DLEALE  191 (434)
T ss_pred             HHHHHHHH--HHCCCCCCEEEECCCCCCCHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCC-----CHHHHH
T ss_conf             99999986--31058872788617641012320035452101046887788888701143113404517-----389999


Q ss_pred             HHCC---CCCCCCCCCCCCCCCCCCCC----CCCEECCCCCCCCCCCCCCCCCCCCCCCC------HHHHCCCCCCCCCC
Q ss_conf             5102---33443322222222333333----32100023444431012332000111000------01100112223432
Q gi|254781062|r  159 NRLT---ERTKLIAITHMSNVLGTVIP----IKEICRIAHERNIPVLVDGSQGSVHNFVD------VQDIDCDWYIITGH  225 (406)
Q Consensus       159 ~~i~---~~t~lv~i~~~~~~tG~~~p----i~~I~~~~~~~g~~~~vD~aq~~g~~~id------~~~~~~D~~~~S~h  225 (406)
T Consensus       192 ~~f~~~G~~iAgvIvEPv~GNmGvvpP~~eFL~~Lr~lt~e~g~LLI~DEV~T-GFR-va~~GAQ~yfgV~PDl~~lG--  267 (434)
T TIGR00713       192 EAFEEYGEEIAGVIVEPVAGNMGVVPPKKEFLEGLRELTEEYGALLIFDEVIT-GFR-VALGGAQEYFGVEPDLTTLG--  267 (434)
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCC-HHH-CCHHHCCHHCCCCCCCEEEC--
T ss_conf             99986798343788612025766648852235899999987295775502210-122-13321501137874103423--


Q ss_pred             C-CCCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCC--CHHHHHHHHHCCCCCCCCCC-CC
Q ss_conf             2-23544431000256663100121145303433202453003310000012212--02456642101233222222-22
Q gi|254781062|r  226 K-LYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPP--ISQAIALGVALDYVEKIDRK-SI  301 (406)
Q Consensus       226 K-~~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~--~~~~~al~~al~~~~~~g~~-~i  301 (406)
T Consensus       268 KI~GGGlP~gA~gGrrEiM~~laP~--------------------G~vYQAGTlsGNPlam~AG~atLk~~~~---~~~~  324 (434)
T TIGR00713       268 KIIGGGLPVGAFGGRREIMERLAPE--------------------GPVYQAGTLSGNPLAMAAGLATLKLLDE---EKGV  324 (434)
T ss_pred             HHHCCCCCCEEECCCHHHHHHHCCC--------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCH
T ss_conf             3233764510122675688431788--------------------7744564355588999999999998534---8883


Q ss_pred             CCCCCCCCCCCCCCCCCC---CEEEECCCCCCCCCEEEEEEC-C--CCHHH---------HH---HHHHHCCCEEEECCH
Q ss_conf             222222222222222222---101322685215867999808-9--99999---------99---999878969997521
Q gi|254781062|r  302 FSYERELARYVRSRLKEV---RGMQLVNESLEDSPIISFRLG-N--IHPYD---------LA---LFLDGEGIAIRAGTH  363 (406)
Q Consensus       302 ~~~~~~l~~~l~~~L~~~---~g~~i~~~~~~~~~iv~~~~~-~--~~~~~---------v~---~~L~~~gI~v~~G~~  363 (406)
T Consensus       325 Y~~l~~~~~~L~~g~~e~l~~~gip~--~~~~~gSMf~~FFtd~~~V~ny~~A~~SD~e~F~~Ff~~mL~~GVylpPS~F  402 (434)
T TIGR00713       325 YTELDELAKRLAEGLSEVLEDKGIPH--TVNRVGSMFSLFFTDEEEVTNYADAKKSDTELFAKFFHEMLEKGVYLPPSQF  402 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             48999999999999999998279858--9950440045665778898788999886189889999999858887898721


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCHHHHH----HHHHHHHHHHHHH
Q ss_conf             12788997289957999935888999999----9999999999971
Q gi|254781062|r  364 CANPLLKFLGIDSLCRASLAMYNTYEEAD----KFIETLKKSIQFF  405 (406)
Q Consensus       364 ca~~~~~~~g~~~~iRiS~~~~nt~edid----~~i~~l~~~i~~l  405 (406)
T Consensus       403 ------Ea-----~F-~S--~AH~~E~i~yaq~~ti~a~~~~f~~~  434 (434)
T TIGR00713       403 ------EA-----CF-IS--AAHTEEDIEYAQTNTIEAAEEVFAEL  434 (434)
T ss_pred             ------HH-----HH-HC--CCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ------15-----55-16--77772117899999999999998409