HHsearch alignment for GI: 254781062 and conserved domain: TIGR03392
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=100.00 E-value=0 Score=677.58 Aligned_cols=397 Identities=39% Similarity=0.668 Sum_probs=377.3
Q ss_pred CCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89789987384102656578659976688889898999999999986149866026799999999999999999998287
Q gi|254781062|r 3 FDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINA 82 (406)
Q Consensus 3 ~d~~~~R~~fp~l~~~~~~~~~iYld~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga 82 (406)
T Consensus 1 ~d~~~~R~~FP~l~~-----~~iYlDnAatt~~p~~V~~a~~~~~~~~~~n~~~s~~~~~~~~~~~~e~aR~~iA~~lga 75 (398)
T TIGR03392 1 FNPAQFRQQFPALQD-----GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNA 75 (398)
T ss_pred CCHHHHHHHCCCCCC-----CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 997999865848899-----908867863268989999999999986348887514399999999999999999997095
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 97654334687689876543223444320134434540110000100001222232222222222222102578875102
Q gi|254781062|r 83 SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLT 162 (406)
Q Consensus 83 ~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~ 162 (406)
T Consensus 76 ~~~~~Iifts~~Te~~n~~~~~~~~~~~~~gd~ii~s~~EH~s~~~pw~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~i~ 155 (398)
T TIGR03392 76 PDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT 155 (398)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCC
T ss_conf 99897999587799999898776887239989899824400342389998876448527996147889879999998525
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 33443322222222333333321000234444310123320001110000110011222343222354443100025666
Q gi|254781062|r 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242 (406)
Q Consensus 163 ~~t~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~g~~~id~~~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~ 242 (406)
T Consensus 156 ~~T~lVsi~~vsn~~G~i~pi~~I~~~~~~~g~~~~vDa~Q~~g~~~idv~~~~~D~~~~S~hKl~GP~G~G~Ly~~~~~ 235 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTEL 235 (398)
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCHH
T ss_conf 78708998255567888587999999998659747863341156203341026787799865535699841899984114
Q ss_pred CCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 31001211453034332024530033100000122120245664210123322222222222222222222222222101
Q gi|254781062|r 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGM 322 (406)
Q Consensus 243 ~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~ 322 (406)
T Consensus 236 ~~~l~p~~~Gg~~~~~~~~~~~~~~~~~~r~e~GT~n~~~i~gl~~al~~l~~~~~~~~~~~~~~L~~~~~~~l~~l~g~ 315 (398)
T TIGR03392 236 LEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGF 315 (398)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 74379735799734433477764455502114688548789999999999996499999999999999999998638996
Q ss_pred EECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 32268521586799980899999999999878969997521127889972899579999358889999999999999999
Q gi|254781062|r 323 QLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSI 402 (406)
Q Consensus 323 ~i~~~~~~~~~iv~~~~~~~~~~~v~~~L~~~gI~v~~G~~ca~~~~~~~g~~~~iRiS~~~~nt~edid~~i~~l~~~i 402 (406)
T Consensus 316 ~~~~~--~~~~~~~f~~~~~~~~~l~~~L~~~gi~v~~G~~ca~~~l~a~g~~g~iRvS~~~ynT~edId~li~aL~~~l 393 (398)
T TIGR03392 316 RSFRC--PGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAAL 393 (398)
T ss_pred CCCCC--CCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 44579--9996799987993999999999778979966866548999986899879996788889999999999999999
Q ss_pred HHHC
Q ss_conf 9719
Q gi|254781062|r 403 QFFQ 406 (406)
Q Consensus 403 ~~l~ 406 (406)
T Consensus 394 ~~l~ 397 (398)
T TIGR03392 394 ELLN 397 (398)
T ss_pred HHHC
T ss_conf 9843