HHsearch alignment for GI: 254781062 and conserved domain: cd00615
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.79 E-value=2.4e-20 Score=147.88 Aligned_cols=222 Identities=21% Similarity=0.215 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999982879765433468768987654322344432013443454011000010000122223222222222
Q gi|254781062|r 67 DKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPI 146 (406)
Q Consensus 67 ~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~~~~~gd~Vi~s~~eh~s~~~~~~~~~~~~G~~v~~i~~ 146 (406)
T Consensus 59 g~I~eAq~laA~~~ga~~--s~flvnGsT~g~~a~i~a~----~~~gd~vlv~RN~HkSv~~gl~----l~g~~Pvyl~p 128 (294)
T cd00615 59 GPIKEAQELAARAFGAKH--TFFLVNGTSSSNKAVILAV----CGPGDKILIDRNCHKSVINGLV----LSGAVPVYLKP 128 (294)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCHHHHHHHHHHHH----CCCCCEEEEECCCHHHHHHHHH----HCCCEEEEEEC
T ss_conf 199999999999839996--6998277269999999983----2899989982651899999999----86984899606
Q ss_pred C--CC----CCCHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC-----CCCCCCHH
Q ss_conf 2--22----21025788751023--344332222222233333332100023444431012332000-----11100001
Q gi|254781062|r 147 D--NQ----GFFHIDEFKNRLTE--RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS-----VHNFVDVQ 213 (406)
Q Consensus 147 ~--~~----g~id~~~l~~~i~~--~t~lv~i~~~~~~tG~~~pi~~I~~~~~~~g~~~~vD~aq~~-----g~~~id~~ 213 (406)
T Consensus 129 ~~~~~~gi~~~i~~~~~~~al~~~p~~kav~lt~PtY-~G~~~Dl~~i~~~~h~~~~~llVDEAhGah~~F~~~lp~~a~ 207 (294)
T cd00615 129 ERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTY-YGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAA 207 (294)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC-CEEEECHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCHH
T ss_conf 4355569538999999999998589965899977998-877668999999984049979997754034431877875566
Q ss_pred HHCCCCCCCCCCCC-CCCCCCCHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 10011222343222-35444310002566631001211453034332024530033100000122120245664210123
Q gi|254781062|r 214 DIDCDWYIITGHKL-YGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDY 292 (406)
Q Consensus 214 ~~~~D~~~~S~hK~-~Gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~~ 292 (406)
T Consensus 208 ~~GAD~vv~S~HKtL~altQ~s~lh~~~~~v~~~~------------------l~~~l~~~qTTSPSYllmASlD~ar~~ 269 (294)
T cd00615 208 MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDR------------------VNEALNLHQSTSPSYLILASLDVARAM 269 (294)
T ss_pred HCCCEEEEECHHHCCCCCCHHHHEEECCCCCCHHH------------------HHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 66963999623214533222532023799689999------------------999999883887589999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32222222222222222222222222
Q gi|254781062|r 293 VEKIDRKSIFSYERELARYVRSRLKE 318 (406)
Q Consensus 293 ~~~~g~~~i~~~~~~l~~~l~~~L~~ 318 (406)
T Consensus 270 ~~~~G~~l-~~~~l~~a~~~R~~i~~ 294 (294)
T cd00615 270 MALEGKEL-VEELIELALYARQEINK 294 (294)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 99999999-99999999999999659