HHsearch alignment for GI: 254781062 and conserved domain: pfam03841
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=99.71 E-value=2e-17 Score=129.50 Aligned_cols=289 Identities=21% Similarity=0.301 Sum_probs=173.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 68888989899999999998614986602679999999999999999999828797654334687689876543223444
Q gi|254781062|r 29 NAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGAR 108 (406)
Q Consensus 29 ~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~ 108 (406)
T Consensus 12 nLGRa~l~~~a~~a~~~~~~-~y~nLE~dl~~--g~RG~R~~~~~~ll~~ltgaE~a---~vVNnnAaAv~L~l~~---- 81 (367)
T pfam03841 12 NLGRALLSEEAVEAAKEAAR-HYSNLEYDLES--GKRGSRDSHLEELLCELTGAEDA---LVVNNNAAAVLLVLNT---- 81 (367)
T ss_pred CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCEE---EEECCCHHHHHHHHHH----
T ss_conf 78777899999999999861-77203666741--77663578999999986398659---9987838999999998----
Q ss_pred HHHCCCCCCCCHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCC--
Q ss_conf 320134434540110----00010000122223222222222222210257887510233443322222222--3333--
Q gi|254781062|r 109 HISTGDEIVLSVMEH----HSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNV--LGTV-- 180 (406)
Q Consensus 109 ~~~~gd~Vi~s~~eh----~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~--tG~~-- 180 (406)
T Consensus 82 -la~g~evivSRGelVeiGgsfRiP--dim~~sGa~LvEVGtTNr--T~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~ 156 (367)
T pfam03841 82 -LAQGKEVIISRGELVEIGGSFRIP--DIMKQSGARLVEVGTTNR--THLKDYEQAINENTALLMKVHTSNYRIQGFTKE 156 (367)
T ss_pred -HHCCCCEEEECCEEECCCCCCCCH--HHHHHCCCEEEEECCCCC--CCHHHHHHHCCCCCEEEEEEECCCCEECCCCCC
T ss_conf -754890577555451238754408--999965978998256688--898999987082461899994265122374677
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCC---------CCCCCCHH---HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCE-
Q ss_conf 3332100023444431012332000---------11100001---1001122234322235444310002566631001-
Q gi|254781062|r 181 IPIKEICRIAHERNIPVLVDGSQGS---------VHNFVDVQ---DIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMD- 247 (406)
Q Consensus 181 ~pi~~I~~~~~~~g~~~~vD~aq~~---------g~~~id~~---~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~~~~~~- 247 (406)
T Consensus 157 v~~~el~~la~~~~ip~i~DlGSG~l~d~~~~gl~~E-p~v~~~l~~GaDlV~FSGDKLLGGPQAGII~Gkk~lI~~ikk 235 (367)
T pfam03841 157 VSLAELVALGKEHGLPVYYDLGSGSLVDLSQYGLPKE-PTVQELLALGVDLVSFSGDKLLGGPQAGIIVGKKELIERLKK 235 (367)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCC-CCHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHH
T ss_conf 9999999999876996799758663112200179999-989999973998899867645689853247645999997464
Q ss_pred -EECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCC-CCCC--------------CCCCCCCCCCCCCCCC
Q ss_conf -21145303433202453003310000012212024566421012-3322--------------2222222222222222
Q gi|254781062|r 248 -PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALD-YVEK--------------IDRKSIFSYERELARY 311 (406)
Q Consensus 248 -p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~-~~~~--------------~g~~~i~~~~~~l~~~ 311 (406)
T Consensus 236 nPL~R--------------------AlRvD---KltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~ 292 (367)
T pfam03841 236 NPLKR--------------------ALRVD---KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKL 292 (367)
T ss_pred CCHHH--------------------HHCCC---HHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 74445--------------------44458---89999999999998490000011658998639999999999999999
Q ss_pred CCCCCCCCCEEEECCC---------CCCCCCE--EEEEECCCCHHHHHHHHHHCCC
Q ss_conf 2222222210132268---------5215867--9998089999999999987896
Q gi|254781062|r 312 VRSRLKEVRGMQLVNE---------SLEDSPI--ISFRLGNIHPYDLALFLDGEGI 356 (406)
Q Consensus 312 l~~~L~~~~g~~i~~~---------~~~~~~i--v~~~~~~~~~~~v~~~L~~~gI 356 (406)
T Consensus 293 l~~~~~~~~~~~v~~~~s~vGgGslP~~~lpS~al~i~~~~~~~~~l~~~LR~~~~ 348 (367)
T pfam03841 293 LKARLGSGAEVSVEPSFSQIGGGSLPVKELPSAAVTIRPENMALDALKLRLRLLDP 348 (367)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 76751688259999777743788787776887799985798999999999737999