HHsearch alignment for GI: 254781062 and conserved domain: pfam03841

>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=99.71  E-value=2e-17  Score=129.50  Aligned_cols=289  Identities=21%  Similarity=0.301  Sum_probs=173.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             68888989899999999998614986602679999999999999999999828797654334687689876543223444
Q gi|254781062|r   29 NAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGAR  108 (406)
Q Consensus        29 ~a~~~~~~~~V~~a~~~~~~~~~~n~~~~~~~~~~~~~~~~~~aR~~ia~~lga~~~~~v~ft~~~Te~~n~~~~~~~~~  108 (406)
T Consensus        12 nLGRa~l~~~a~~a~~~~~~-~y~nLE~dl~~--g~RG~R~~~~~~ll~~ltgaE~a---~vVNnnAaAv~L~l~~----   81 (367)
T pfam03841        12 NLGRALLSEEAVEAAKEAAR-HYSNLEYDLES--GKRGSRDSHLEELLCELTGAEDA---LVVNNNAAAVLLVLNT----   81 (367)
T ss_pred             CCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCEE---EEECCCHHHHHHHHHH----
T ss_conf             78777899999999999861-77203666741--77663578999999986398659---9987838999999998----


Q ss_pred             HHHCCCCCCCCHHHH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCC--
Q ss_conf             320134434540110----00010000122223222222222222210257887510233443322222222--3333--
Q gi|254781062|r  109 HISTGDEIVLSVMEH----HSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNV--LGTV--  180 (406)
Q Consensus       109 ~~~~gd~Vi~s~~eh----~s~~~~~~~~~~~~G~~v~~i~~~~~g~id~~~l~~~i~~~t~lv~i~~~~~~--tG~~--  180 (406)
T Consensus        82 -la~g~evivSRGelVeiGgsfRiP--dim~~sGa~LvEVGtTNr--T~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~  156 (367)
T pfam03841        82 -LAQGKEVIISRGELVEIGGSFRIP--DIMKQSGARLVEVGTTNR--THLKDYEQAINENTALLMKVHTSNYRIQGFTKE  156 (367)
T ss_pred             -HHCCCCEEEECCEEECCCCCCCCH--HHHHHCCCEEEEECCCCC--CCHHHHHHHCCCCCEEEEEEECCCCEECCCCCC
T ss_conf             -754890577555451238754408--999965978998256688--898999987082461899994265122374677


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCC---------CCCCCCHH---HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCE-
Q ss_conf             3332100023444431012332000---------11100001---1001122234322235444310002566631001-
Q gi|254781062|r  181 IPIKEICRIAHERNIPVLVDGSQGS---------VHNFVDVQ---DIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMD-  247 (406)
Q Consensus       181 ~pi~~I~~~~~~~g~~~~vD~aq~~---------g~~~id~~---~~~~D~~~~S~hK~~Gp~G~G~l~~~~~~~~~~~-  247 (406)
T Consensus       157 v~~~el~~la~~~~ip~i~DlGSG~l~d~~~~gl~~E-p~v~~~l~~GaDlV~FSGDKLLGGPQAGII~Gkk~lI~~ikk  235 (367)
T pfam03841       157 VSLAELVALGKEHGLPVYYDLGSGSLVDLSQYGLPKE-PTVQELLALGVDLVSFSGDKLLGGPQAGIIVGKKELIERLKK  235 (367)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCEECCCCCCCCCC-CCHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHH
T ss_conf             9999999999876996799758663112200179999-989999973998899867645689853247645999997464


Q ss_pred             -EECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHCC-CCCC--------------CCCCCCCCCCCCCCCC
Q ss_conf             -21145303433202453003310000012212024566421012-3322--------------2222222222222222
Q gi|254781062|r  248 -PFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALD-YVEK--------------IDRKSIFSYERELARY  311 (406)
Q Consensus       248 -p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~al~~al~-~~~~--------------~g~~~i~~~~~~l~~~  311 (406)
T Consensus       236 nPL~R--------------------AlRvD---KltLaaLeatL~~Yl~~~~~~~~IP~l~mL~~~~~~L~~rA~~l~~~  292 (367)
T pfam03841       236 NPLKR--------------------ALRVD---KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKL  292 (367)
T ss_pred             CCHHH--------------------HHCCC---HHHHHHHHHHHHHHHCCCCHHCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             74445--------------------44458---89999999999998490000011658998639999999999999999


Q ss_pred             CCCCCCCCCEEEECCC---------CCCCCCE--EEEEECCCCHHHHHHHHHHCCC
Q ss_conf             2222222210132268---------5215867--9998089999999999987896
Q gi|254781062|r  312 VRSRLKEVRGMQLVNE---------SLEDSPI--ISFRLGNIHPYDLALFLDGEGI  356 (406)
Q Consensus       312 l~~~L~~~~g~~i~~~---------~~~~~~i--v~~~~~~~~~~~v~~~L~~~gI  356 (406)
T Consensus       293 l~~~~~~~~~~~v~~~~s~vGgGslP~~~lpS~al~i~~~~~~~~~l~~~LR~~~~  348 (367)
T pfam03841       293 LKARLGSGAEVSVEPSFSQIGGGSLPVKELPSAAVTIRPENMALDALKLRLRLLDP  348 (367)
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCC
T ss_conf             76751688259999777743788787776887799985798999999999737999