RPSBLAST alignment for GI: 254781062 and conserved domain: TIGR03235
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. Length = 353
Score = 128 bits (324), Expect = 2e-30
Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 29/347 (8%)
Query: 26 YFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSV 85
Y D+ A+ V ++++ E+ N H + E+AR +V + A +
Sbjct: 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADT- 59
Query: 86 KEIIFTRSATESINLVSYGWGARHISTGDE-IVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
+E+IFT ATES NL G G + I+ S +EH + + P L R G ++ ++
Sbjct: 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALE-RNGFTVTYL 118
Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
P+D G +DE + + T L++I H++N G++ PI+EI + VD +Q
Sbjct: 119 PVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178
Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDP-----FMGGSEMIADV 259
VD+ D +GHK+YGP GIG L + R P F GG E
Sbjct: 179 VGKITVDLSADRIDLISCSGHKIYGPKGIGALVIR-KRGKPKAPLKPIMFGGGQER---- 233
Query: 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV 319
PGT P+ + +G A + + + ++ R + +R L+ +
Sbjct: 234 ------------GLRPGTLPVHLIVGMGEAAEIARR-NAQAWEVKLRAMRNQLRDALQTL 280
Query: 320 RGMQLVNESLEDSP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHCA 365
++L + E P I++F + ++ L + L + A+ G+ C+
Sbjct: 281 G-VKLNGDPAETIPHILNFSIDGVNSEALIVNLRAD-AAVSTGSACS 325