RPSBLAST alignment for GI: 254781062 and conserved domain: TIGR03235

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. Length = 353
 Score =  128 bits (324), Expect = 2e-30
 Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 29/347 (8%)

Query: 26  YFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSV 85
           Y D+ A+      V ++++     E+ N     H   +      E+AR +V   + A + 
Sbjct: 1   YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADT- 59

Query: 86  KEIIFTRSATESINLVSYGWGARHISTGDE-IVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
           +E+IFT  ATES NL   G        G + I+ S +EH + + P   L  R G ++ ++
Sbjct: 60  EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALE-RNGFTVTYL 118

Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
           P+D  G   +DE  + +   T L++I H++N  G++ PI+EI  +         VD +Q 
Sbjct: 119 PVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQV 178

Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDP-----FMGGSEMIADV 259
                VD+     D    +GHK+YGP GIG L  +  R     P     F GG E     
Sbjct: 179 VGKITVDLSADRIDLISCSGHKIYGPKGIGALVIR-KRGKPKAPLKPIMFGGGQER---- 233

Query: 260 TQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEV 319
                          PGT P+   + +G A +   + + ++     R +   +R  L+ +
Sbjct: 234 ------------GLRPGTLPVHLIVGMGEAAEIARR-NAQAWEVKLRAMRNQLRDALQTL 280

Query: 320 RGMQLVNESLEDSP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHCA 365
             ++L  +  E  P I++F +  ++   L + L  +  A+  G+ C+
Sbjct: 281 G-VKLNGDPAETIPHILNFSIDGVNSEALIVNLRAD-AAVSTGSACS 325