RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] (406 letters) >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.. Length = 373 Score = 580 bits (1497), Expect = e-166 Identities = 202/374 (54%), Positives = 266/374 (71%), Gaps = 1/374 (0%) Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84 +Y DNAA++QKPQ VID+I+ Y H AN+HRG+H ++ TD YE AR+KV RFINA S Sbjct: 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPS 60 Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144 EIIFTR+ TE+INLV+YG G R GDEIV SVMEHHSNI+PW L +R GA L V Sbjct: 61 PDEIIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVV 119 Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204 P+D+ G ++ + LTERTKL+A+TH+SNVLGT+ P+KEI IAHE +PVLVDG+Q Sbjct: 120 PVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179 Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMV 264 + H VDVQD+ CD+ +GHK+ GP+GIG LY KE L EM P+ GG EMI +V+ + Sbjct: 180 AGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239 Query: 265 TYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQL 324 TYADLP++FE GTP I+ AI LG A+DY+EKI ++I ++E EL Y RL E+ G+++ Sbjct: 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV 299 Query: 325 VNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAM 384 ++ + + ++SF L IHP+D+A LD GIA+RAG HCA PL++ LG+ RAS + Sbjct: 300 YGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGL 359 Query: 385 YNTYEEADKFIETL 398 YNT EE D +E L Sbjct: 360 YNTEEEIDALVEAL 373 >gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]. Length = 405 Score = 465 bits (1197), Expect = e-131 Identities = 194/407 (47%), Positives = 276/407 (67%), Gaps = 5/407 (1%) Query: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60 FD+ ++R DFP L R++ KPL+Y DNAA++QKPQ V+D++ Y AN+HRG H Sbjct: 1 TMFDVAAVRADFPALKREV-GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHT 59 Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120 +A TD YE AR+ V RF+NA S EI+FTR TE++NLV+ G G R + GDEIV+S Sbjct: 60 LAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLG-RSLKPGDEIVVSD 118 Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180 +EHHSNI+PW L +R GA + +P+D+ G +D + +T +TKL+A++H+SNV GTV Sbjct: 119 LEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTV 178 Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSK 239 P+KEI +AHE VLVD +Q + H +DVQ++ CD+ +GHK L GP+GIG LY + Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVR 238 Query: 240 ESRLNEMDPFMGGSEMIADVTQD-MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDR 298 + L E++PF+GG MI V++D VT A+LP RFE GTP I+ AI L ALDY+ +I Sbjct: 239 KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGM 298 Query: 299 KSIFSYERELARYVRSRLKEVRGMQLVN-ESLEDSPIISFRLGNIHPYDLALFLDGEGIA 357 ++I ++EREL Y+ L E+ G+++ + I+SF + IHP+D+A LD +GIA Sbjct: 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIA 358 Query: 358 IRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQF 404 +RAG HCA PL + LG+D+ RASL +YNT E+ D+ +E LKK++ Sbjct: 359 VRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALAL 405 >gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 371 Score = 448 bits (1154), Expect = e-126 Identities = 173/372 (46%), Positives = 242/372 (65%), Gaps = 3/372 (0%) Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84 IY D+AA+ QKPQ V+D++ Y+ N+HRG+H++ T YE+AR+KV FINA S Sbjct: 1 IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60 Query: 85 VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144 +EIIFT TE+INLV+ G R + GDEI+++ MEHH+N++PW L +R GA++ + Sbjct: 61 DEEIIFTSGTTEAINLVAISLG-RRLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVI 119 Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204 P+D G +D + LT RTKL+AITH+SNV GTV P++EI ++AHE V+VD +Q Sbjct: 120 PVDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQA 179 Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVT-QDM 263 H +DVQ + D+ +GHKLYGP+GIG LY + L ++ P+ GG MI V+ Sbjct: 180 VGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPWKGGGGMIDLVSLLQE 239 Query: 264 VTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQ 323 T+AD P +FE GTP I+ I LG ALDY+ +I ++I +ERELA Y+ RL + G++ Sbjct: 240 TTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPGIR 299 Query: 324 LV-NESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASL 382 LV + IISF +HP+D+A LD GIA+R+G HCA PL++ LG+ RASL Sbjct: 300 LVPAVAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCAQPLMERLGVHGTLRASL 359 Query: 383 AMYNTYEEADKF 394 YNT EE D+ Sbjct: 360 YFYNTEEEVDRL 371 >gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid transport and metabolism]. Length = 428 Score = 214 bits (545), Expect = 5e-56 Identities = 105/398 (26%), Positives = 181/398 (45%), Gaps = 40/398 (10%) Query: 24 LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83 +Y DN A+ V+D+++ N H Y A D E AR++V + INA Sbjct: 44 PVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRS-YGWKA-EDAVEAAREQVAKLINAD 101 Query: 84 SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143 +I+FT ATES NLV G + ++++ H ++ Q G + + Sbjct: 102 P-SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTY 160 Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203 +P+++ G I + + + +T+L++I H++N +G + P+KEI +I E + V VD +Q Sbjct: 161 LPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220 Query: 204 GSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY--SKESRLNEMDPFMGGSEMIADVTQ 261 VDVQ+++ D+ I+ HK+YGP GIG LY K RL P GG + Sbjct: 221 AVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERG---- 276 Query: 262 DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321 GT A+ LG A ++V K +Y+ + + + +L G Sbjct: 277 -----------LRSGTVATPLAVGLGSAAEFVNK-----EMAYDEAIIKRLSEKLLMGIG 320 Query: 322 MQLVNESLEDSPIISF----RLGNIHPYDLALFLDGEGIAIRAGTHCAN------PLLKF 371 L +L S + L + +L +D + +A+ +G+ C + +L+ Sbjct: 321 QSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRA 380 Query: 372 LGID-----SLCRASLAMYNTYEEADKFIETLKKSIQF 404 +G+D S R S+ Y T E+ D ++ +KK + Sbjct: 381 IGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSL 418 >gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]. Length = 386 Score = 195 bits (498), Expect = 1e-50 Identities = 108/399 (27%), Positives = 179/399 (44%), Gaps = 39/399 (9%) Query: 25 IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84 IY DNAA+ +V+++++ + + N LH E+AR+++ + + A Sbjct: 3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPS-SLHSFGREARKAVEEAREQIAKLLGADP 61 Query: 85 VKEIIFTRSATESINLVSYG--WGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLV 142 +EIIFT ATES NL G R+ G I+ S +EH + + +L +R+G + Sbjct: 62 -EEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVT 119 Query: 143 WVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202 ++P+D+ G +++ + L T L++I H +N GT+ PI EI I ER I VD Sbjct: 120 YLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179 Query: 203 QGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADVT 260 Q +D++++ D + HK GP GIG LY + ++P + GG E Sbjct: 180 QAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQE------ 231 Query: 261 QDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVR 320 GT + + G A + + + + + R+L + L E+ Sbjct: 232 ----------RGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEII 280 Query: 321 GMQLVNESLED-SP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHC------ANPLLKFL 372 +N E P I++F + L L LD GIA+ G+ C + +L+ + Sbjct: 281 PDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAM 340 Query: 373 GID-----SLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406 GI R SL + T EE D E LK+ I+ + Sbjct: 341 GISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379 >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).. Length = 170 Score = 97.1 bits (242), Expect = 9e-21 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 14/178 (7%) Query: 68 KYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNI 127 K E+ +K+ R + + +F S T + + GDE+++ H S Sbjct: 1 KLEELEEKLARLLQPG-NDKAVFVPSGTGANEAALLA----LLGPGDEVIVDANGHGSRY 55 Query: 128 IPWYFLRQRRGASLVWVPIDN--QGFFHIDEFKNRLTERTKLIAITHMSNVLGTV-IPIK 184 + + GA V VP+D+ G + + + + + + G V +P+K Sbjct: 56 ---WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLK 112 Query: 185 EICRIAHERNIPVLVDGSQGSVH---NFVDVQDIDCDWYIITGHKLYGPSGIGGLYSK 239 EI +IA E I +LVD + V + + D + HK G G G + K Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170 >gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]. Length = 460 Score = 65.4 bits (159), Expect = 2e-11 Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 60/363 (16%) Query: 36 PQDVIDSIMCTYSHEYA------NIHRGL--HYMANAVTDKYEKARDKVRRFINASSVKE 87 P+ + T A +++ L + A + E+ + + + A Sbjct: 62 PRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS 121 Query: 88 IIFTRSATESIN--LVSYGWGARHISTGD--------EIVLSVMEHHSNIIPWYFLRQRR 137 FT TE+ L++ R + + IV S H S +L Sbjct: 122 GTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---- 177 Query: 138 GASLVWVPIDNQGFFHID-----EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHE 192 G L VP + ID E + T ++ ++ G++ I+E+ IA E Sbjct: 178 GLGLRRVPTV-PTDYRIDVDALEEAIDENTIGGVVVGTAGTTD-TGSIDDIEELADIAEE 235 Query: 193 RNIPVLVDGSQGSVHNFVDVQDIDCDWYI-------ITGHK-LYGPSGIGGLYSK-ESRL 243 I + VD + G D D+ + + GHK P G G + + E L Sbjct: 236 YGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEAL 295 Query: 244 NEM----DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299 + D ++ G + + L G+ P QA+AL L + + + Sbjct: 296 RRILIFADYYLPGG--------GIPNFTIL------GSRPGRQALALYANLRRLGREGYR 341 Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH--PYDLALFLDGEGIA 357 + ELARY+ L+++ +LVNE + PI++FRL + DL+ LD G Sbjct: 342 KLLDRTLELARYLAEELEKLGDFELVNEP--ELPIVAFRLKDDEDTLADLSERLDRRGWQ 399 Query: 358 IRA 360 + A Sbjct: 400 VPA 402 >gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]. Length = 383 Score = 62.5 bits (152), Expect = 2e-10 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 27/289 (9%) Query: 58 LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDE 115 + + + ++ +K+R+ + ++ + S T ++ + S + GD+ Sbjct: 29 VGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL------VEPGDK 82 Query: 116 IVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE--RTKLIAITHM 173 +++ V + + +R GA +V + ++ +E + L + K +A+ H Sbjct: 83 VLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHN 140 Query: 174 SNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITG-HK-LYG 229 G + P+KEI + A E ++VD S G VD ID ITG K L Sbjct: 141 ETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDV---AITGSQKALGA 197 Query: 230 PSGIGGLYSKESRLNEMDPFMGGSEM--IADVTQDMVTYADLPYRFEPGTPPISQAIALG 287 P G+ + E L ++ S + + M PY TPP++ AL Sbjct: 198 PPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY-----TPPVNLIYALR 252 Query: 288 VALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336 ALD + + ++ + R LA +R+ L+ G++L + SP ++ Sbjct: 253 EALDLILEEGLEARIARHRRLAEALRAGLEA-LGLELFADPERRSPTVT 300 >gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.. Length = 361 Score = 55.1 bits (133), Expect = 3e-08 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 25/149 (16%) Query: 106 GARH---------ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVP--------IDN 148 GAR GD +V+ + H+++ Y +R G ++ VP I Sbjct: 67 GAREGKFAVMHSLCEKGDWVVVDGLAHYTS----YVAAERAGLNVREVPNTGHPEYHITP 122 Query: 149 QGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH 207 +G+ I+E K+ + L +TH+ G + K+I ++ HE +P+L++G+ Sbjct: 123 EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR 182 Query: 208 NFVDVQDIDCDWYIITGHKLY---GPSGI 233 V +++ D+ + +GHK P G+ Sbjct: 183 MPVSGKELGADFIVGSGHKSMAASAPIGV 211 >gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]. Length = 382 Score = 52.6 bits (126), Expect = 2e-07 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 21/177 (11%) Query: 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFL 133 + + F+ V+ T A E+ V + GD +V+ + H++ Y Sbjct: 68 EDLAEFLGMDEVR---VTAGAREAKFAVMHALCKE----GDWVVVDSLAHYTT----YVA 116 Query: 134 RQRRGASLVWVP--------IDNQGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIK 184 +R G ++ VP I +G+ I+E K+ + L +TH+ G + K Sbjct: 117 AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAK 176 Query: 185 EICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSG-IGGLYSKE 240 ++ +I E +P+L++ + V ++I D+ + +GHK S IG L E Sbjct: 177 KVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSE 233 >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.. Length = 356 Score = 52.3 bits (126), Expect = 2e-07 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 45/298 (15%) Query: 58 LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT---ES--INLVSYGWGARHIST 112 L + + ++ + +R + + + S T E+ NL+ Sbjct: 23 LGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE---------P 73 Query: 113 GDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAIT 171 GD++++ V + W + +R GA + V +E L + K + +T Sbjct: 74 GDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131 Query: 172 HMSNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHK--L 227 H G + P++ I +A + + ++VD S G +D +D TG + L Sbjct: 132 HNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDV---AYTGSQKAL 188 Query: 228 YGPSGIG-GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLP--------YRFEPGTP 278 P G+G +S+ + E I T+ Y DL P TP Sbjct: 189 GAPPGLGPIAFSERAL-----------ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP 237 Query: 279 PISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336 P++ AL ALD + + ++ ++ R LA+ +R L+ G++L+ + SP ++ Sbjct: 238 PVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-LGLKLLAKPELRSPTVT 294 >gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. Length = 288 Score = 51.8 bits (125), Expect = 4e-07 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 26/132 (19%) Query: 86 KEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF-----LRQRRGAS 140 + +F S T + N ++ H GDE++ ++I YF + GA Sbjct: 48 EAALFVPSGTMA-NQLAL---MAHCRRGDEVICG---EPAHI---YFDETGGHAELGGAQ 97 Query: 141 LVWVPIDNQGFFHIDEFKNRLTE-------RTKLIAITHMSNVL-GTVIP---IKEICRI 189 V +P G +++ + + T LI++ + N G V+ ++EI I Sbjct: 98 PVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAI 157 Query: 190 AHERNIPVLVDG 201 A E IP+ +DG Sbjct: 158 AREHGIPLHLDG 169 >gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]. Length = 407 Score = 51.5 bits (123), Expect = 4e-07 Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 20/295 (6%) Query: 12 FPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEK 71 + R +IY D + +P+ V + + E+ + A D ++ Sbjct: 20 AKLRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWG--EGLIRSWNKAKADWFDL 77 Query: 72 AR---DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNII 128 DK+ I A + + ++ + T SINL A G +++S E + Sbjct: 78 PERLGDKLAPLIGARAGEVVV---TDTTSINLFKVLAAALRPQEGRRVIVS--EGDNFPT 132 Query: 129 PWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICR 188 Y A L+ + D +G + +T+ ++ ++H++ G ++ ++ I Sbjct: 133 DLYIAEGL--ADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITA 190 Query: 189 IAHERNIPVLVD--GSQGSVHNFVDVQDIDCDWYIITGHKLY--GPSGIGGLYSKESRLN 244 +AH+ V D S G+V VD+ D+ I +K GP GL+ Sbjct: 191 LAHQHGALVGWDLAHSAGAVP--VDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRE 248 Query: 245 EMDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKID 297 P + G A YA P RF GT P+ AL ALD +D Sbjct: 249 RSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD 303 >gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. Length = 351 Score = 51.2 bits (123), Expect = 5e-07 Identities = 59/335 (17%), Positives = 117/335 (34%), Gaps = 76/335 (22%) Query: 66 TDKYEKARDKVRRFINASSVKE------IIFTRSATESINLVSYGWGARHISTGDEIVLS 119 TD + R+ + +F+ S V + ++F A +I + + + GD I++ Sbjct: 38 TDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLL----ANPGDAILVP 93 Query: 120 VMEH--HSNIIPWYFLRQRRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSN 175 + + I G +V P+ + FH+D + L E+ K++ N Sbjct: 94 APTYASYIRIARL------AGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHESPHN 147 Query: 176 VLGTVIPIKEICRIA---HERNIPVLVD--------GSQGSVHNFVDVQDIDCDWYIITG 224 GTV P++E+ ++ E NI +LVD GS +V + + ++ G Sbjct: 148 PTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLA--EGPNLLVVG 205 Query: 225 --HKLYGPSG--IGGLYSKE---SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGT 277 K +G +G +G + S+L ++ S Sbjct: 206 SFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSST---------------------HL 244 Query: 278 PPISQAIALGVAL--DYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPII 335 + A L +E++ R+ I +E Y+R L+ ++ + Sbjct: 245 QAAAAAALSDPLLVASELEEM-RQRI----KERRDYLRDGLEAAG----LSVLPSQAGFF 295 Query: 336 SFRLGNIHPYDLALF---LDGEGIAIRAGTHCANP 367 + L L+ G+ + G+ P Sbjct: 296 LLTGLD-PETAKELAQVLLEEVGVYVTPGSSPGVP 329 >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.. Length = 350 Score = 50.0 bits (120), Expect = 1e-06 Identities = 67/342 (19%), Positives = 121/342 (35%), Gaps = 60/342 (17%) Query: 77 RRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV---MEHHSNIIPWYFL 133 RR +EI+ T A E+++L+ ++ GDE+++ + + Sbjct: 51 RRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLVPDPTYPGYEAAA------ 100 Query: 134 RQRRGASLVWVPIDNQGFFHIDEFKNRL--TERTKLIAITHMSNVLGTVIP---IKEICR 188 + GA +V VP+D +G F +D T +TKL+ + + +N G V+ ++E+ Sbjct: 101 -RLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAE 159 Query: 189 IAHERNIPVLVD------GSQGSVHNFVD-VQDIDCDWYIITGHKLYGPSG--IGGLYSK 239 +A + I ++ D G + + + + + K +G G IG L + Sbjct: 160 LAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAP 219 Query: 240 ESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299 L E L G +SQA A D E ++ Sbjct: 220 PEELLER-------------------LKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE- 259 Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALF-LDGEGIAI 358 + R + LKE+ LV + L + L G+ + Sbjct: 260 -LRERYRRRRDALLEALKELGP--LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVV 316 Query: 359 RAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400 R G+ F+ R S A EE ++ +E L + Sbjct: 317 RPGSAFGEGGEGFV------RLSFA--TPEEELEEALERLAE 350 >gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 48.7 bits (116), Expect = 3e-06 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 19/137 (13%) Query: 75 KVRRFINA----SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEH--HSNII 128 VRRF A VK + S T +++L A I GDE+++ +N + Sbjct: 35 FVRRFEQAFAEYLGVKYAVAVSSGTAALHL---ALLALAIGPGDEVIVPSFTFVATANAV 91 Query: 129 PWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEIC 187 GA V+V ID D + +T RTK I H + G + I Sbjct: 92 LL------VGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH---LAGQPCDMDAIM 142 Query: 188 RIAHERNIPVLVDGSQG 204 +A +PV+ D +Q Sbjct: 143 ALAKRHGLPVIEDAAQA 159 >gnl|CDD|32104 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]. Length = 395 Score = 46.4 bits (110), Expect = 1e-05 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGT-VIPIKEICRIAHERNIPVLVD-G 201 V + H+ +++ + E T L+ H SN T ++ +E+ IAHE+ +PV+VD Sbjct: 136 VEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLA 195 Query: 202 SQGSVHNFVDVQDI---DCDWYIITGHKLY-GP-SGI 233 S V D+++ D +G KL GP +GI Sbjct: 196 SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGI 232 >gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]. Length = 426 Score = 46.0 bits (109), Expect = 2e-05 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 111 STGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAI 170 GD IV S + + +R G + +V D+ + F+ + E TK + Sbjct: 99 GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDD-----PENFEAAIDENTKAVFA 153 Query: 171 THMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205 + N V+ I+ I IAH +P++VD + + Sbjct: 154 ETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT 188 >gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 381 Score = 45.7 bits (109), Expect = 2e-05 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 23/105 (21%) Query: 110 ISTGDEIVLS---------VMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNR 160 + GD +V + + E + R G + +V + +D + Sbjct: 88 LKAGDHVVATDDLYGGTYRLFEK---------VLPRFGIEVTFVDPSD-----LDALEAA 133 Query: 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205 + TK + + +N L V+ I+ I +IA + V+VD + S Sbjct: 134 IKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFAS 178 >gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]. Length = 393 Score = 45.7 bits (108), Expect = 3e-05 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 37 QDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATE 96 + I+++ +H + G+ + A+ +KY++ R ++ +EII T A E Sbjct: 48 EAAIEALEEGGTHYTPS--AGIPELREAIAEKYKR-----RYGLDVDPEEEIIVTAGAKE 100 Query: 97 SINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---NQ 149 ++ L ++ GDE+++ P Y + G V VP+D N Sbjct: 101 ALFLAFLA----LLNPGDEVLIPD--------PGYPSYEAAVKLAGGKPVPVPLDEEENG 148 Query: 150 GFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200 +++ + +T +TK I + +N G V +K I +A E +I ++ D Sbjct: 149 FKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202 >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.. Length = 352 Score = 45.2 bits (108), Expect = 3e-05 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 136 RRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHER 193 GA+ V+V ID + +ID + +T RTK I H+ G + I IA Sbjct: 77 LLGATPVFVDIDPDTY-NIDPELIEAAITPRTKAIIPVHL---YGNPADMDAIMAIAKRH 132 Query: 194 NIPVLVDGSQG 204 +PV+ D +Q Sbjct: 133 GLPVIEDAAQA 143 >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.. Length = 369 Score = 43.3 bits (103), Expect = 1e-04 Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200 + + + TKL+ + +N V+ I+ I +AHE ++VD Sbjct: 115 PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD 161 >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.. Length = 349 Score = 42.5 bits (101), Expect = 2e-04 Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 55/260 (21%) Query: 158 KNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD--------GSQGS--VH 207 + R KLI + ++ G + P+ E+ +A + + VD G G Sbjct: 126 EARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185 Query: 208 NFVDVQDIDCDWYIITG--HKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVT 265 D+D II G K +G +GG ++ GS+ + D + + Sbjct: 186 FGGLTDDVD----IIMGTLGKAFG--AVGG-------------YIAGSKELIDY---LRS 223 Query: 266 YADLPYRFEPGTPPISQAIALGVALDYV----EKIDRKSIFSYERELARYVRSRLKEVRG 321 YA + F PP + A A AL+ + E+ +R +E RY+R LKE G Sbjct: 224 YAR-GFIFSTSLPP-AVAAAALAALEVLQGGPERRERL------QENVRYLRRGLKE-LG 274 Query: 322 MQLVNESLEDSPIISFRLGNI-HPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRA 380 + I + + L GI ++A + P + R Sbjct: 275 FPVGGS--PSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGT-----ARLRI 327 Query: 381 SLAMYNTYEEADKFIETLKK 400 SL+ +T E+ D+ +E LK+ Sbjct: 328 SLSAAHTKEDIDRLLEALKE 347 >gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]. Length = 385 Score = 40.7 bits (95), Expect = 7e-04 Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 17/283 (6%) Query: 130 WYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAITHMSNVLGTVIPIKEICR 188 +R GA + V D ++E +L++ K + +TH + G + + I Sbjct: 107 AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166 Query: 189 -IAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNE 245 + H+ +LVD S G +D +D Y + L P+G+ + + L Sbjct: 167 ELCHKHEALLLVDTVASLGGTEFEMDEWGVDVA-YTGSQKALGAPAGLSIISFSDKALEA 225 Query: 246 MDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKIDRKSIFS 303 + + + R TPP+ +L AL + + ++ + Sbjct: 226 IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWR 285 Query: 304 YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTH 363 RE++++++ L+ + G+QL E RL + + +D + + A +H Sbjct: 286 RHREMSKWLKLSLEAL-GLQLFVVDEE------LRLPTVTTVKVPYGVDWKDVVAYAMSH 338 Query: 364 CANPLLKFLG--IDSLCRASLAMYN-TYEEADKFIETLKKSIQ 403 + LG + + R L N E D +E LK ++Q Sbjct: 339 YVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ 381 >gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase. Length = 367 Score = 39.6 bits (93), Expect = 0.001 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 135 QRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSN--VLGTV--IPIKEICRIA 190 ++ GA LV V N+ H+ +++ + E T L+ H SN + G + + E+ + Sbjct: 109 KQSGARLVEVGTTNRT--HLKDYEQAINENTALLMKVHTSNYRIQGFTKEVSLAELVALG 166 Query: 191 HERNIPVLVDGSQGSVHNF 209 E +PV D GS+ + Sbjct: 167 KEHGLPVYYDLGSGSLVDL 185 >gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 409 Score = 39.5 bits (92), Expect = 0.002 Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209 + + + E TK + + SN L V I+++ R+AH+ V+VD + GS +N Sbjct: 152 LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207 >gnl|CDD|31207 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]. Length = 496 Score = 39.1 bits (91), Expect = 0.002 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIP 196 G +V V D G +D+ + + + + IT+ + LG I+EIC I HE Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITN-PSTLGVFEEDIREICEIVHEAGGQ 236 Query: 197 VLVDGS 202 V DG+ Sbjct: 237 VYYDGA 242 >gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]. Length = 396 Score = 38.3 bits (89), Expect = 0.004 Identities = 14/38 (36%), Positives = 18/38 (47%) Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200 TKL+ + SN L V I I R+A V+VD Sbjct: 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVD 185 >gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]. Length = 388 Score = 38.3 bits (89), Expect = 0.004 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 51/238 (21%) Query: 178 GTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY 237 G + P+ E+ +A + + VD + G + GP+G G Sbjct: 185 GDIAPLPELVELAEKYGALLYVDEAHA------------------VG--VLGPNGRGLAE 224 Query: 238 SKESRLNEMDPFMG--------------GSEMIADVTQDMVTYADLPYRFEPGTPPISQA 283 E+D +G GS + D + A P+ F PP + A Sbjct: 225 HFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID---YLRNRAR-PFIFSTALPP-AVA 279 Query: 284 IALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH 343 A AL +E+ RE + + + + + + +SPII LG+ Sbjct: 280 AAALAALRILEE------GPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEE 333 Query: 344 P-YDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400 + + L EGI + A P + R +L +T E+ D+ E L + Sbjct: 334 RALEASRALLEEGIYVSAIRPPTVPKGT-----ARLRITLTAAHTEEDIDRLAEALSE 386 >gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.. Length = 338 Score = 38.1 bits (89), Expect = 0.004 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Query: 164 RTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGS 202 L+++ + + GTV P +K I +A E +P+ +DG+ Sbjct: 127 PPSLVSLENTTE-GGTVYPLDELKAISALAKENGLPLHLDGA 167 >gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]. Length = 420 Score = 37.6 bits (87), Expect = 0.006 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 38/180 (21%) Query: 37 QDVIDSIMCT-YSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT 95 ++ Y+ Y GL + A+ Y + ++ E++ T A Sbjct: 54 KNAAKEPSTNQYTRGY-----GLPQLRKALAKAY---SEFYGGLLDPDD--EVLVTAGAN 103 Query: 96 ESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---- 147 E+I+ G ++ GDE+++ P++ G + V+VP+ Sbjct: 104 EAISSALLGL----LNPGDEVIV--------FEPFFDCYIPQVVMAGGTPVFVPLKPKEG 151 Query: 148 ----NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200 + +E ++++TE+TK I + N G V ++ I + + + V+ D Sbjct: 152 NVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211 >gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 363 Score = 37.2 bits (87), Expect = 0.007 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 12/98 (12%) Query: 110 ISTGDE-IVLSVMEHHS-NIIPWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTK 166 I GDE IV S + N + + GA V+V ID + + +T RTK Sbjct: 62 IGPGDEVIVPSFTFVATANAVLYL------GAKPVFVDIDPDTYNIDPAAIEAAITPRTK 115 Query: 167 LIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204 I H+ G + I IA E +PV+ D + Sbjct: 116 AIMPVHL---YGQPADMDAIRAIAAEHGLPVIEDAAHA 150 >gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Length = 342 Score = 36.4 bits (84), Expect = 0.013 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 147 DNQGFFHIDEFKNRLT------ERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPV 197 G ++ + + T L + + + GTV P ++ I + E +P+ Sbjct: 107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPL 166 Query: 198 LVDGS 202 +DG+ Sbjct: 167 HMDGA 171 >gnl|CDD|33757 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]. Length = 417 Score = 35.7 bits (82), Expect = 0.022 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Query: 144 VPIDNQGFF--HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRI---AHERNIPVL 198 + + G F H+D + E T I ++ +N G V+ +E+ ++ A + IP++ Sbjct: 157 IELLPAGQFKYHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLI 216 Query: 199 VDGSQG 204 +D + G Sbjct: 217 IDNAYG 222 >gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme transport and metabolism]. Length = 570 Score = 35.4 bits (81), Expect = 0.032 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%) Query: 164 RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIIT 223 K++A + ++ G V P++E+C +AH+ +D VH Sbjct: 303 VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLD----EVHAV-------------- 344 Query: 224 GHKLYGPSGIGGLYSKESRLNEMDPF----------MGGSEMIADVTQDMVTYADLPYRF 273 LYGP G G+ ++ ++++D +GG DM+ + F Sbjct: 345 --GLYGPRG-AGVGERDGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIF 401 Query: 274 EPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSP 333 PP+ A AL A+ ++ + + + + +YV+ L E G+ ++ S Sbjct: 402 TTSLPPMVLAGAL-EAVRILKSEEGRVLRRQHQRNVKYVKQLLME-LGIPVIP---NPSH 456 Query: 334 IISFRLGNIH 343 II R+G+ Sbjct: 457 IIPVRVGDAA 466 >gnl|CDD|32083 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]. Length = 318 Score = 32.1 bits (73), Expect = 0.27 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 146 IDNQGFFHIDEFK----NRLTERTKLIAITHMSNVLGTVIPIKE--ICRIAHERNIPV-- 197 + N+ + +EF +L K + LG + E I A + +P+ Sbjct: 130 VPNEEYEVFEEFIREILEKLLGIKKEWSTREFIYELGKRLNDDESSILYTAAKNGVPIFC 189 Query: 198 --LVDGSQGS 205 + D S G Sbjct: 190 PAITDSSIGD 199 >gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.. Length = 398 Score = 30.7 bits (70), Expect = 0.69 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIPVLVDG 201 VP D G ++ K ++E + + + N LG IKEI IAH V VDG Sbjct: 139 VPSDEGGTVDLEALKEEVSEEVAALMVQY-PNTLGVFEDLIKEIADIAHSAGALVYVDG 196 >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.. Length = 345 Score = 30.6 bits (70), Expect = 0.74 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 31/154 (20%) Query: 74 DKVRRFINASSVKEI-IFTRSATESI--NLVSYGWGARHISTGD--------EIVLSVME 122 + + + S +FT +ES L++ AR IV S Sbjct: 45 NWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQA 104 Query: 123 HHSNIIPWYFLRQRRGAS-----LVWVPIDNQGFFHIDEFKNRLTERTKLIAITHM---- 173 H S + A+ + VP+D G + + + E M Sbjct: 105 HVSV---------EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVAT 155 Query: 174 --SNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205 + G + P++EI +A + ++ + VD + G Sbjct: 156 AGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 >gnl|CDD|35232 KOG0008, KOG0008, KOG0008, Transcription initiation factor TFIID, subunit TAF1 [Transcription]. Length = 1563 Score = 30.0 bits (67), Expect = 1.3 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 16/89 (17%) Query: 247 DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYER 306 DP + S ++ + R P T P + DY I + Sbjct: 1257 DPSVSLSSILETIINQA--------RSSPNTYPFPTPVNAKEVKDYYRVITPPM---DLQ 1305 Query: 307 ELARYVRSRLKEVRGMQLVNESLEDSPII 335 + VR RL E R LE+ P+I Sbjct: 1306 TQKKLVRKRLYESR-----EHFLEELPLI 1329 >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.. Length = 294 Score = 29.5 bits (67), Expect = 1.7 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 155 DEFKNRLTERT--KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200 + FK L E K IT+ G +++I AH R +PVLVD Sbjct: 143 ETFKKALIEHPDAKAAVITN-PTYYGICYNLRKIVEEAHHRGLPVLVD 189 >gnl|CDD|39050 KOG3846, KOG3846, KOG3846, L-kynurenine hydrolase [Amino acid transport and metabolism]. Length = 465 Score = 29.2 bits (65), Expect = 2.0 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 229 GPSGIGGLYSKESRLNEMDPFMGG---SEMIADVTQDMVTYAD---LPYRFEPGTPPISQ 282 G GIGGL+ E E P + G + D V L +R PPI Sbjct: 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRIS--NPPIID 338 Query: 283 AIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321 +AL +L+ + + + L Y+ LK +G Sbjct: 339 VVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKG 377 >gnl|CDD|38072 KOG2861, KOG2861, KOG2861, Uncharacterized conserved protein [Function unknown]. Length = 399 Score = 28.7 bits (64), Expect = 2.8 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 280 ISQAIALGVALDYVEK-IDR--KSIFSYERELARYVRSRLKEVRGMQLVNE 327 IS A+A V L Y E +D+ +S LA + L ++ + + Sbjct: 248 ISHALAQSVKLSYFESLVDKTIESTTDIPESLALGGKLTLSREELLKKIGK 298 >gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.. Length = 341 Score = 28.7 bits (64), Expect = 3.4 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 152 FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209 + + FK RL E + + N +G + +K+I +A +PV+ SQ ++N+ Sbjct: 232 YTVYGFK-RLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHASQ--IYNY 286 >gnl|CDD|145208 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic initiation factor 5A (eIF-5A) contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DS) EC:1.1.1.249. The modified version of eIF-5A, and DS, are required for eukaryotic cell proliferation. Length = 297 Score = 27.8 bits (62), Expect = 5.7 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 148 NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPI-KEICRIAHERNIPV----LVDGS 202 F ++ + K+ + + LG I + + AH+ NIP+ L DGS Sbjct: 124 LMPIF--EKMLEEQEKEGKIWTPSEFIHELGKEINDERSVLYWAHKNNIPIFCPALTDGS 181 Query: 203 QG 204 G Sbjct: 182 LG 183 >gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 138 Score = 27.6 bits (62), Expect = 6.0 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVD 211 + I R+A+E +PVLV +G + + Sbjct: 13 VAAIVRLANEHGLPVLV---RGGGSSLLG 38 >gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]. Length = 417 Score = 27.3 bits (60), Expect = 7.0 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%) Query: 110 ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIA 169 I T ++ V S +H++II L +R V F + R KL+ Sbjct: 147 ILTPEDAVFSDELNHASIIDGIRLCKRYRHVDV--------FDLEHCLISACKMRLKLVV 198 Query: 170 ITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205 + ++ G + P++EI ++A + + +D + Sbjct: 199 TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHAT 234 >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 933 Score = 27.5 bits (61), Expect = 7.2 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 12/93 (12%) Query: 275 PGTPPISQAIALGVALDY--VEKIDRKSIF------SYERELARYVRSRLKEVRGMQLVN 326 P T P + AIA+ LDY VE K I S ++ L+ +G +L Sbjct: 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEG 296 Query: 327 ESLEDSPIISFRLGNIHPYDLALFL---DGEGI 356 E P F P L + DG G+ Sbjct: 297 LRYE-HPFYDFVYDRAFPVILGDHVTLDDGTGL 328 >gnl|CDD|37251 KOG2040, KOG2040, KOG2040, Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]. Length = 1001 Score = 27.2 bits (60), Expect = 7.7 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIA---ITHMSNVLGTVIP-IKEICRIAHER 193 G +V V D G + + K + + +A +T+ S G I +IC I HE Sbjct: 651 GMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEH 709 Query: 194 NIPVLVDGS 202 V +DG+ Sbjct: 710 GGQVYLDGA 718 >gnl|CDD|37379 KOG2168, KOG2168, KOG2168, Cullins [Cell cycle control, cell division, chromosome partitioning]. Length = 835 Score = 27.2 bits (60), Expect = 8.6 Identities = 13/108 (12%), Positives = 29/108 (26%) Query: 14 ILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKAR 73 L + ++ S + P+ E +I+ Y+ N V K KA Sbjct: 148 ALLASSQDFIDASRESEPSQRSPRPNSPGRSSLKGIELNSIYARKAYIYNEVLHKLNKAG 207 Query: 74 DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVM 121 + + + + + + +T D+ Sbjct: 208 QPNLVDLLFNVASQSLGDEDIADMWTNLQSMTQLTDPATRDDSKNRSG 255 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.139 0.414 Gapped Lambda K H 0.267 0.0720 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,027,033 Number of extensions: 272598 Number of successful extensions: 811 Number of sequences better than 10.0: 1 Number of HSP's gapped: 781 Number of HSP's successfully gapped: 53 Length of query: 406 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 310 Effective length of database: 4,189,273 Effective search space: 1298674630 Effective search space used: 1298674630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.5 bits)