RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase
involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter
asiaticus str. psy62]
         (406 letters)



>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
           belongs to the pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I). The
           major groups in this CD correspond to cysteine
           desulfurase (SufS) and selenocysteine lyase. SufS
           catalyzes the removal of elemental sulfur and selenium
           atoms from L-cysteine, L-cystine, L-selenocysteine, and
           L-selenocystine to produce L-alanine; and selenocysteine
           lyase catalyzes the decomposition of L-selenocysteine..
          Length = 373

 Score =  580 bits (1497), Expect = e-166
 Identities = 202/374 (54%), Positives = 266/374 (71%), Gaps = 1/374 (0%)

Query: 25  IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
           +Y DNAA++QKPQ VID+I+  Y H  AN+HRG+H ++   TD YE AR+KV RFINA S
Sbjct: 1   VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPS 60

Query: 85  VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
             EIIFTR+ TE+INLV+YG G R    GDEIV SVMEHHSNI+PW  L +R GA L  V
Sbjct: 61  PDEIIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVV 119

Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
           P+D+ G   ++  +  LTERTKL+A+TH+SNVLGT+ P+KEI  IAHE  +PVLVDG+Q 
Sbjct: 120 PVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQS 179

Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMV 264
           + H  VDVQD+ CD+   +GHK+ GP+GIG LY KE  L EM P+ GG EMI +V+ +  
Sbjct: 180 AGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239

Query: 265 TYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQL 324
           TYADLP++FE GTP I+ AI LG A+DY+EKI  ++I ++E EL  Y   RL E+ G+++
Sbjct: 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRV 299

Query: 325 VNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAM 384
             ++ + + ++SF L  IHP+D+A  LD  GIA+RAG HCA PL++ LG+    RAS  +
Sbjct: 300 YGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGL 359

Query: 385 YNTYEEADKFIETL 398
           YNT EE D  +E L
Sbjct: 360 YNTEEEIDALVEAL 373


>gnl|CDD|30866 COG0520, CsdB, Selenocysteine lyase [Amino acid transport and
           metabolism].
          Length = 405

 Score =  465 bits (1197), Expect = e-131
 Identities = 194/407 (47%), Positives = 276/407 (67%), Gaps = 5/407 (1%)

Query: 1   MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60
             FD+ ++R DFP L R++  KPL+Y DNAA++QKPQ V+D++   Y    AN+HRG H 
Sbjct: 1   TMFDVAAVRADFPALKREV-GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHT 59

Query: 61  MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
           +A   TD YE AR+ V RF+NA S  EI+FTR  TE++NLV+ G G R +  GDEIV+S 
Sbjct: 60  LAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLG-RSLKPGDEIVVSD 118

Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
           +EHHSNI+PW  L +R GA +  +P+D+ G   +D  +  +T +TKL+A++H+SNV GTV
Sbjct: 119 LEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTV 178

Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHK-LYGPSGIGGLYSK 239
            P+KEI  +AHE    VLVD +Q + H  +DVQ++ CD+   +GHK L GP+GIG LY +
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVR 238

Query: 240 ESRLNEMDPFMGGSEMIADVTQD-MVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDR 298
           +  L E++PF+GG  MI  V++D  VT A+LP RFE GTP I+ AI L  ALDY+ +I  
Sbjct: 239 KELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGM 298

Query: 299 KSIFSYERELARYVRSRLKEVRGMQLVN-ESLEDSPIISFRLGNIHPYDLALFLDGEGIA 357
           ++I ++EREL  Y+   L E+ G+++      +   I+SF +  IHP+D+A  LD +GIA
Sbjct: 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIA 358

Query: 358 IRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQF 404
           +RAG HCA PL + LG+D+  RASL +YNT E+ D+ +E LKK++  
Sbjct: 359 VRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALAL 405


>gnl|CDD|144011 pfam00266, Aminotran_5, Aminotransferase class-V.  This domain is
           found in amino transferases, and other enzymes including
           cysteine desulphurase EC:4.4.1.-.
          Length = 371

 Score =  448 bits (1154), Expect = e-126
 Identities = 173/372 (46%), Positives = 242/372 (65%), Gaps = 3/372 (0%)

Query: 25  IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
           IY D+AA+ QKPQ V+D++   Y+    N+HRG+H++    T  YE+AR+KV  FINA S
Sbjct: 1   IYLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPS 60

Query: 85  VKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWV 144
            +EIIFT   TE+INLV+   G R +  GDEI+++ MEHH+N++PW  L +R GA++  +
Sbjct: 61  DEEIIFTSGTTEAINLVAISLG-RRLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVI 119

Query: 145 PIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
           P+D  G   +D  +  LT RTKL+AITH+SNV GTV P++EI ++AHE    V+VD +Q 
Sbjct: 120 PVDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQA 179

Query: 205 SVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVT-QDM 263
             H  +DVQ +  D+   +GHKLYGP+GIG LY +   L ++ P+ GG  MI  V+    
Sbjct: 180 VGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPWKGGGGMIDLVSLLQE 239

Query: 264 VTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQ 323
            T+AD P +FE GTP I+  I LG ALDY+ +I  ++I  +ERELA Y+  RL  + G++
Sbjct: 240 TTFADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLAIPGIR 299

Query: 324 LV-NESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASL 382
           LV   +     IISF    +HP+D+A  LD  GIA+R+G HCA PL++ LG+    RASL
Sbjct: 300 LVPAVAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCAQPLMERLGVHGTLRASL 359

Query: 383 AMYNTYEEADKF 394
             YNT EE D+ 
Sbjct: 360 YFYNTEEEVDRL 371


>gnl|CDD|36762 KOG1549, KOG1549, KOG1549, Cysteine desulfurase NFS1 [Amino acid
           transport and metabolism].
          Length = 428

 Score =  214 bits (545), Expect = 5e-56
 Identities = 105/398 (26%), Positives = 181/398 (45%), Gaps = 40/398 (10%)

Query: 24  LIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINAS 83
            +Y DN A+      V+D+++        N H    Y   A  D  E AR++V + INA 
Sbjct: 44  PVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRS-YGWKA-EDAVEAAREQVAKLINAD 101

Query: 84  SVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVW 143
              +I+FT  ATES NLV  G          + ++++   H  ++      Q  G  + +
Sbjct: 102 P-SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTY 160

Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQ 203
           +P+++ G   I + +  +  +T+L++I H++N +G + P+KEI +I  E  + V VD +Q
Sbjct: 161 LPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQ 220

Query: 204 GSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY--SKESRLNEMDPFMGGSEMIADVTQ 261
                 VDVQ+++ D+  I+ HK+YGP GIG LY   K  RL    P  GG +       
Sbjct: 221 AVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERG---- 276

Query: 262 DMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321
                         GT     A+ LG A ++V K       +Y+  + + +  +L    G
Sbjct: 277 -----------LRSGTVATPLAVGLGSAAEFVNK-----EMAYDEAIIKRLSEKLLMGIG 320

Query: 322 MQLVNESLEDSPIISF----RLGNIHPYDLALFLDGEGIAIRAGTHCAN------PLLKF 371
             L   +L  S    +     L   +    +L +D + +A+ +G+ C +       +L+ 
Sbjct: 321 QSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRA 380

Query: 372 LGID-----SLCRASLAMYNTYEEADKFIETLKKSIQF 404
           +G+D     S  R S+  Y T E+ D  ++ +KK +  
Sbjct: 381 IGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSL 418


>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
           and related enzymes [Amino acid transport and
           metabolism].
          Length = 386

 Score =  195 bits (498), Expect = 1e-50
 Identities = 108/399 (27%), Positives = 179/399 (44%), Gaps = 39/399 (9%)

Query: 25  IYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASS 84
           IY DNAA+     +V+++++   +  + N    LH          E+AR+++ + + A  
Sbjct: 3   IYLDNAATTPVDPEVLEAMLPYLTEVFGNPS-SLHSFGREARKAVEEAREQIAKLLGADP 61

Query: 85  VKEIIFTRSATESINLVSYG--WGARHISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLV 142
            +EIIFT  ATES NL   G     R+   G  I+ S +EH + +    +L +R+G  + 
Sbjct: 62  -EEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVT 119

Query: 143 WVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGS 202
           ++P+D+ G   +++ +  L   T L++I H +N  GT+ PI EI  I  ER I   VD  
Sbjct: 120 YLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179

Query: 203 QGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNEMDPFM--GGSEMIADVT 260
           Q      +D++++  D    + HK  GP GIG LY +      ++P +  GG E      
Sbjct: 180 QAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGV--RLEPLIHGGGQE------ 231

Query: 261 QDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVR 320
                          GT  +   +  G A +   + + +   +  R+L   +   L E+ 
Sbjct: 232 ----------RGLRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEII 280

Query: 321 GMQLVNESLED-SP-IISFRLGNIHPYDLALFLDGEGIAIRAGTHC------ANPLLKFL 372
               +N   E   P I++F    +    L L LD  GIA+  G+ C       + +L+ +
Sbjct: 281 PDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAM 340

Query: 373 GID-----SLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
           GI         R SL  + T EE D   E LK+ I+  +
Sbjct: 341 GISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLR 379


>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
           type I) of pyridoxal phosphate (PLP)-dependent enzymes.
           PLP combines with an alpha-amino acid to form a compound
           called a Schiff base or aldimine intermediate, which
           depending on the reaction, is the substrate in four
           kinds of reactions (1) transamination (movement of amino
           groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           Structure and sequence analysis has revealed that the
           PLP dependent enzymes can be classified into four major
           groups of different evolutionary origin: aspartate
           aminotransferase superfamily (fold type I), tryptophan
           synthase beta superfamily (fold type II), alanine
           racemase superfamily (fold type III), and D-amino acid
           superfamily (fold type IV) and Glycogen phophorylase
           family (fold type V)..
          Length = 170

 Score = 97.1 bits (242), Expect = 9e-21
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 14/178 (7%)

Query: 68  KYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNI 127
           K E+  +K+ R +      + +F  S T +            +  GDE+++    H S  
Sbjct: 1   KLEELEEKLARLLQPG-NDKAVFVPSGTGANEAALLA----LLGPGDEVIVDANGHGSRY 55

Query: 128 IPWYFLRQRRGASLVWVPIDN--QGFFHIDEFKNRLTERTKLIAITHMSNVLGTV-IPIK 184
              +   +  GA  V VP+D+   G   +   +    +    + +   +   G V +P+K
Sbjct: 56  ---WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLK 112

Query: 185 EICRIAHERNIPVLVDGSQGSVH---NFVDVQDIDCDWYIITGHKLYGPSGIGGLYSK 239
           EI +IA E  I +LVD +          V + +   D    + HK  G  G G +  K
Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170


>gnl|CDD|30425 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
           proteins [Amino acid transport and metabolism].
          Length = 460

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 60/363 (16%)

Query: 36  PQDVIDSIMCTYSHEYA------NIHRGL--HYMANAVTDKYEKARDKVRRFINASSVKE 87
           P+  +     T     A       +++ L     + A  +  E+  + +   + A     
Sbjct: 62  PRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS 121

Query: 88  IIFTRSATESIN--LVSYGWGARHISTGD--------EIVLSVMEHHSNIIPWYFLRQRR 137
             FT   TE+    L++     R  +  +         IV S   H S      +L    
Sbjct: 122 GTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---- 177

Query: 138 GASLVWVPIDNQGFFHID-----EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHE 192
           G  L  VP      + ID     E  +  T    ++     ++  G++  I+E+  IA E
Sbjct: 178 GLGLRRVPTV-PTDYRIDVDALEEAIDENTIGGVVVGTAGTTD-TGSIDDIEELADIAEE 235

Query: 193 RNIPVLVDGSQGSVHNFVDVQDIDCDWYI-------ITGHK-LYGPSGIGGLYSK-ESRL 243
             I + VD + G         D   D+ +       + GHK    P G G +  + E  L
Sbjct: 236 YGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEAL 295

Query: 244 NEM----DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
             +    D ++ G          +  +  L      G+ P  QA+AL   L  + +   +
Sbjct: 296 RRILIFADYYLPGG--------GIPNFTIL------GSRPGRQALALYANLRRLGREGYR 341

Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH--PYDLALFLDGEGIA 357
            +     ELARY+   L+++   +LVNE   + PI++FRL +      DL+  LD  G  
Sbjct: 342 KLLDRTLELARYLAEELEKLGDFELVNEP--ELPIVAFRLKDDEDTLADLSERLDRRGWQ 399

Query: 358 IRA 360
           + A
Sbjct: 400 VPA 402


>gnl|CDD|30424 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
           aspartate aminotransferase [Amino acid transport and
           metabolism].
          Length = 383

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 27/289 (9%)

Query: 58  LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDE 115
           + + +       ++  +K+R+     +   ++ + S T ++   + S       +  GD+
Sbjct: 29  VGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL------VEPGDK 82

Query: 116 IVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTE--RTKLIAITHM 173
           +++ V         +  + +R GA +V + ++       +E +  L +    K +A+ H 
Sbjct: 83  VLVVVNGKFGER--FAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHN 140

Query: 174 SNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITG-HK-LYG 229
               G + P+KEI + A E    ++VD   S G     VD   ID     ITG  K L  
Sbjct: 141 ETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDV---AITGSQKALGA 197

Query: 230 PSGIGGLYSKESRLNEMDPFMGGSEM--IADVTQDMVTYADLPYRFEPGTPPISQAIALG 287
           P G+  +   E  L  ++     S    +    + M      PY     TPP++   AL 
Sbjct: 198 PPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPY-----TPPVNLIYALR 252

Query: 288 VALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336
            ALD + +   ++  +  R LA  +R+ L+   G++L  +    SP ++
Sbjct: 253 EALDLILEEGLEARIARHRRLAEALRAGLEA-LGLELFADPERRSPTVT 300


>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
           to the pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
           produced by O-phosphoseryl-tRNA synthetase which ligates
           O-phosphoserine (Sep) to tRNA(Cys), and
           Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
           Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
           SepCysS forms a dimer, each monomer is composed of a
           large and small domain; the larger, a typical pyridoxal
           5'-phosphate (PLP)-dependent-like enzyme fold.  In the
           active site of each monomer, PLP is covalently bound to
           a conserved Lys residue near the dimer interface..
          Length = 361

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 25/149 (16%)

Query: 106 GARH---------ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVP--------IDN 148
           GAR             GD +V+  + H+++    Y   +R G ++  VP        I  
Sbjct: 67  GAREGKFAVMHSLCEKGDWVVVDGLAHYTS----YVAAERAGLNVREVPNTGHPEYHITP 122

Query: 149 QGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVH 207
           +G+   I+E K+   +   L  +TH+    G +   K+I ++ HE  +P+L++G+     
Sbjct: 123 EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR 182

Query: 208 NFVDVQDIDCDWYIITGHKLY---GPSGI 233
             V  +++  D+ + +GHK      P G+
Sbjct: 183 MPVSGKELGADFIVGSGHKSMAASAPIGV 211


>gnl|CDD|31300 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
           enzymes [General function prediction only].
          Length = 382

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 74  DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYFL 133
           + +  F+    V+    T  A E+   V +         GD +V+  + H++     Y  
Sbjct: 68  EDLAEFLGMDEVR---VTAGAREAKFAVMHALCKE----GDWVVVDSLAHYTT----YVA 116

Query: 134 RQRRGASLVWVP--------IDNQGFFH-IDEFKNRLTERTKLIAITHMSNVLGTVIPIK 184
            +R G ++  VP        I  +G+   I+E K+   +   L  +TH+    G +   K
Sbjct: 117 AERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAK 176

Query: 185 EICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSG-IGGLYSKE 240
           ++ +I  E  +P+L++ +       V  ++I  D+ + +GHK    S  IG L   E
Sbjct: 177 KVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSE 233


>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
           family. This family belongs to pyridoxal phosphate
           (PLP)-dependent aspartate aminotransferase superfamily
           (fold I). The major groups in this CD correspond to
           alanine-glyoxylate aminotransferase (AGAT),
           serine-glyoxylate aminotransferase (SGAT), and
           3-hydroxykynurenine transaminase (HKT). AGAT is a
           homodimeric protein, which catalyses the transamination
           of glyoxylate to glycine, and SGAT converts serine and
           glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
           the PLP-dependent transamination of 3-hydroxykynurenine,
           a potentially toxic metabolite of the kynurenine
           pathway..
          Length = 356

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 45/298 (15%)

Query: 58  LHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT---ES--INLVSYGWGARHIST 112
           L + +       ++  + +R      +    + + S T   E+   NL+           
Sbjct: 23  LGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE---------P 73

Query: 113 GDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAIT 171
           GD++++ V     +   W  + +R GA +  V          +E    L +   K + +T
Sbjct: 74  GDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131

Query: 172 HMSNVLGTVIPIKEICRIAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHK--L 227
           H     G + P++ I  +A + +  ++VD   S G     +D   +D      TG +  L
Sbjct: 132 HNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDV---AYTGSQKAL 188

Query: 228 YGPSGIG-GLYSKESRLNEMDPFMGGSEMIADVTQDMVTYADLP--------YRFEPGTP 278
             P G+G   +S+ +            E I   T+    Y DL             P TP
Sbjct: 189 GAPPGLGPIAFSERAL-----------ERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP 237

Query: 279 PISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIIS 336
           P++   AL  ALD + +   ++ ++  R LA+ +R  L+   G++L+ +    SP ++
Sbjct: 238 PVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-LGLKLLAKPELRSPTVT 294


>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. 
          Length = 288

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 26/132 (19%)

Query: 86  KEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF-----LRQRRGAS 140
           +  +F  S T + N ++      H   GDE++       ++I   YF       +  GA 
Sbjct: 48  EAALFVPSGTMA-NQLAL---MAHCRRGDEVICG---EPAHI---YFDETGGHAELGGAQ 97

Query: 141 LVWVPIDNQGFFHIDEFKNRLTE-------RTKLIAITHMSNVL-GTVIP---IKEICRI 189
            V +P    G   +++ +  +          T LI++ +  N   G V+    ++EI  I
Sbjct: 98  PVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAI 157

Query: 190 AHERNIPVLVDG 201
           A E  IP+ +DG
Sbjct: 158 AREHGIPLHLDG 169


>gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and
           metabolism].
          Length = 407

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 64/295 (21%), Positives = 111/295 (37%), Gaps = 20/295 (6%)

Query: 12  FPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEK 71
             +  R      +IY D  +   +P+ V   +    + E+      +     A  D ++ 
Sbjct: 20  AKLRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWG--EGLIRSWNKAKADWFDL 77

Query: 72  AR---DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEHHSNII 128
                DK+   I A + + ++   + T SINL      A     G  +++S  E  +   
Sbjct: 78  PERLGDKLAPLIGARAGEVVV---TDTTSINLFKVLAAALRPQEGRRVIVS--EGDNFPT 132

Query: 129 PWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICR 188
             Y       A L+ +  D +G       +  +T+   ++ ++H++   G ++ ++ I  
Sbjct: 133 DLYIAEGL--ADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITA 190

Query: 189 IAHERNIPVLVD--GSQGSVHNFVDVQDIDCDWYIITGHKLY--GPSGIGGLYSKESRLN 244
           +AH+    V  D   S G+V   VD+     D+ I   +K    GP    GL+       
Sbjct: 191 LAHQHGALVGWDLAHSAGAVP--VDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRE 248

Query: 245 EMDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKID 297
              P + G    A        YA  P   RF  GT P+    AL  ALD    +D
Sbjct: 249 RSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVD 303


>gnl|CDD|143923 pfam00155, Aminotran_1_2, Aminotransferase class I and II. 
          Length = 351

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 59/335 (17%), Positives = 117/335 (34%), Gaps = 76/335 (22%)

Query: 66  TDKYEKARDKVRRFINASSVKE------IIFTRSATESINLVSYGWGARHISTGDEIVLS 119
           TD   + R+ + +F+  S V +      ++F   A  +I  + +       + GD I++ 
Sbjct: 38  TDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLL----ANPGDAILVP 93

Query: 120 VMEH--HSNIIPWYFLRQRRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSN 175
              +  +  I          G  +V  P+ +   FH+D    +  L E+ K++      N
Sbjct: 94  APTYASYIRIARL------AGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHESPHN 147

Query: 176 VLGTVIPIKEICRIA---HERNIPVLVD--------GSQGSVHNFVDVQDIDCDWYIITG 224
             GTV P++E+ ++     E NI +LVD        GS  +V     +   +    ++ G
Sbjct: 148 PTGTVAPLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRALLA--EGPNLLVVG 205

Query: 225 --HKLYGPSG--IGGLYSKE---SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGT 277
              K +G +G  +G +       S+L ++      S                        
Sbjct: 206 SFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYSST---------------------HL 244

Query: 278 PPISQAIALGVAL--DYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPII 335
              + A      L    +E++ R+ I    +E   Y+R  L+       ++     +   
Sbjct: 245 QAAAAAALSDPLLVASELEEM-RQRI----KERRDYLRDGLEAAG----LSVLPSQAGFF 295

Query: 336 SFRLGNIHPYDLALF---LDGEGIAIRAGTHCANP 367
                +       L    L+  G+ +  G+    P
Sbjct: 296 LLTGLD-PETAKELAQVLLEEVGVYVTPGSSPGVP 329


>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). Pyridoxal
           phosphate combines with an alpha-amino acid to form a
           compound called a Schiff base or aldimine intermediate,
           which depending on the reaction, is the substrate in
           four kinds of reactions (1) transamination (movement of
           amino groups), (2) racemization (redistribution of
           enantiomers), (3) decarboxylation (removing COOH
           groups), and (4) various side-chain reactions depending
           on the enzyme involved. Pyridoxal phosphate (PLP)
           dependent enzymes were previously classified into alpha,
           beta and gamma classes, based on the chemical
           characteristics (carbon atom involved) of the reaction
           they catalyzed. The availability of several structures
           allowed a comprehensive analysis of  the evolutionary
           classification of PLP dependent enzymes, and it was
           found that the functional classification did not always
           agree with the evolutionary history of these enzymes.
           The major groups in this CD corresponds to Aspartate
           aminotransferase a, b and c, Tyrosine, Alanine,
           Aromatic-amino-acid, Glutamine phenylpyruvate,
           1-Aminocyclopropane-1-carboxylate synthase,
           Histidinol-phosphate, gene products of malY and cobC,
           Valine-pyruvate aminotransferase and Rhizopine
           catabolism regulatory protein..
          Length = 350

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 67/342 (19%), Positives = 121/342 (35%), Gaps = 60/342 (17%)

Query: 77  RRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV---MEHHSNIIPWYFL 133
           RR       +EI+ T  A E+++L+        ++ GDE+++       + +        
Sbjct: 51  RRGGVDVPPEEIVVTNGAQEALSLLLRAL----LNPGDEVLVPDPTYPGYEAAA------ 100

Query: 134 RQRRGASLVWVPIDNQGFFHIDEFKNRL--TERTKLIAITHMSNVLGTVIP---IKEICR 188
            +  GA +V VP+D +G F +D        T +TKL+ + + +N  G V+    ++E+  
Sbjct: 101 -RLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAE 159

Query: 189 IAHERNIPVLVD------GSQGSVHNFVD-VQDIDCDWYIITGHKLYGPSG--IGGLYSK 239
           +A +  I ++ D         G     +  +   +    + +  K +G  G  IG L + 
Sbjct: 160 LAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAP 219

Query: 240 ESRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRK 299
              L E                       L      G   +SQA A     D  E ++  
Sbjct: 220 PEELLER-------------------LKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEE- 259

Query: 300 SIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALF-LDGEGIAI 358
            +    R     +   LKE+    LV         +   L      +     L   G+ +
Sbjct: 260 -LRERYRRRRDALLEALKELGP--LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVV 316

Query: 359 RAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400
           R G+        F+      R S A     EE ++ +E L +
Sbjct: 317 RPGSAFGEGGEGFV------RLSFA--TPEEELEEALERLAE 350


>gnl|CDD|30748 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
           apparently involved in regulation of cell wall
           biogenesis [Cell envelope biogenesis, outer membrane].
          Length = 374

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 19/137 (13%)

Query: 75  KVRRFINA----SSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVMEH--HSNII 128
            VRRF  A      VK  +   S T +++L      A  I  GDE+++        +N +
Sbjct: 35  FVRRFEQAFAEYLGVKYAVAVSSGTAALHL---ALLALAIGPGDEVIVPSFTFVATANAV 91

Query: 129 PWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEIC 187
                    GA  V+V ID        D  +  +T RTK I   H   + G    +  I 
Sbjct: 92  LL------VGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH---LAGQPCDMDAIM 142

Query: 188 RIAHERNIPVLVDGSQG 204
            +A    +PV+ D +Q 
Sbjct: 143 ALAKRHGLPVIEDAAQA 159


>gnl|CDD|32104 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
           transferase] [Amino acid transport and metabolism].
          Length = 395

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGT-VIPIKEICRIAHERNIPVLVD-G 201
           V +      H+ +++  + E T L+   H SN   T ++  +E+  IAHE+ +PV+VD  
Sbjct: 136 VEVGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLA 195

Query: 202 SQGSVHNFVDVQDI---DCDWYIITGHKLY-GP-SGI 233
           S   V    D+++      D    +G KL  GP +GI
Sbjct: 196 SGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGI 232


>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
           transport and metabolism].
          Length = 426

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 111 STGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAI 170
             GD IV S   +      +    +R G  + +V  D+      + F+  + E TK +  
Sbjct: 99  GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDD-----PENFEAAIDENTKAVFA 153

Query: 171 THMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
             + N    V+ I+ I  IAH   +P++VD +  +
Sbjct: 154 ETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT 188


>gnl|CDD|144590 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
           enzyme.  This family includes enzymes involved in
           cysteine and methionine metabolism. The following are
           members: Cystathionine gamma-lyase, Cystathionine
           gamma-synthase, Cystathionine beta-lyase, Methionine
           gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
           sulfhydrylase All of these members participate is
           slightly different reactions. All these enzymes use PLP
           (pyridoxal-5'-phosphate) as a cofactor.
          Length = 381

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 23/105 (21%)

Query: 110 ISTGDEIVLS---------VMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNR 160
           +  GD +V +         + E          +  R G  + +V   +     +D  +  
Sbjct: 88  LKAGDHVVATDDLYGGTYRLFEK---------VLPRFGIEVTFVDPSD-----LDALEAA 133

Query: 161 LTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
           +   TK + +   +N L  V+ I+ I +IA +    V+VD +  S
Sbjct: 134 IKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFAS 178


>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
           [Amino acid transport and metabolism].
          Length = 393

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 37  QDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSATE 96
           +  I+++    +H   +   G+  +  A+ +KY++     R  ++    +EII T  A E
Sbjct: 48  EAAIEALEEGGTHYTPS--AGIPELREAIAEKYKR-----RYGLDVDPEEEIIVTAGAKE 100

Query: 97  SINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---NQ 149
           ++ L         ++ GDE+++          P Y       +  G   V VP+D   N 
Sbjct: 101 ALFLAFLA----LLNPGDEVLIPD--------PGYPSYEAAVKLAGGKPVPVPLDEEENG 148

Query: 150 GFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
               +++ +  +T +TK I +   +N  G V     +K I  +A E +I ++ D
Sbjct: 149 FKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISD 202


>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
           (AHBA_syn). AHBA_syn family belongs to pyridoxal
           phosphate (PLP)-dependent aspartate aminotransferase
           superfamily (fold I). The members of this CD are
           involved in various biosynthetic pathways for secondary
           metabolites. Some well studied proteins in this CD are
           AHBA_synthase, protein product of pleiotropic regulatory
           gene degT,  Arnb aminotransferase and pilin
           glycosylation protein. The prototype of this family, the
           AHBA_synthase, is a dimeric PLP dependent enzyme.
           AHBA_syn is the terminal enzyme of
           3-amino-5-hydroxybenzoic acid (AHBA) formation which is
           involved in the biosynthesis of ansamycin antibiotics,
           including rifamycin B. Some members of this CD are
           involved in 4-amino-6-deoxy-monosaccharide D-perosamine
           synthesis. Perosamine is an important element in the
           glycosylation of several cell products, such as
           antibiotics and lipopolysaccharides of gram-positive and
           gram-negative bacteria. The pilin glycosylation protein
           encoded by gene pglA, is a galactosyltransferase
           involved in pilin glycosylation. Additionally, this CD
           consists of ArnB (PmrH) aminotransferase, a
           4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
           enzyme. This CD also consists of several predicted
           pyridoxal phosphate-dependent enzymes apparently
           involved in regulation of cell wall biogenesis. The
           catalytic lysine which is present in all characterized
           PLP dependent enzymes is replaced by histidine in some
           members of this CD..
          Length = 352

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 136 RRGASLVWVPIDNQGFFHID--EFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHER 193
             GA+ V+V ID   + +ID    +  +T RTK I   H+    G    +  I  IA   
Sbjct: 77  LLGATPVFVDIDPDTY-NIDPELIEAAITPRTKAIIPVHL---YGNPADMDAIMAIAKRH 132

Query: 194 NIPVLVDGSQG 204
            +PV+ D +Q 
Sbjct: 133 GLPVIEDAAQA 143


>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
           dependent enzyme and catalyzes the committed step of
           methionine biosynthesis. This pathway is unique to
           microorganisms and plants, rendering the enzyme an
           attractive target for the development of antimicrobials
           and herbicides. This subgroup also includes
           cystathionine gamma-lyases (CGL), O-acetylhomoserine
           sulfhydrylases and O-acetylhomoserine thiol lyases.
           CGL's are very similar to CGS's. Members of this group
           are widely distributed among all three forms of life..
          Length = 369

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
            +  +  +   TKL+ +   +N    V+ I+ I  +AHE    ++VD
Sbjct: 115 PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD 161


>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
           phosphate (PLP)-dependent aspartate aminotransferase
           superfamily (fold I). The major groups in this CD
           corresponds to serine palmitoyltransferase (SPT),
           5-aminolevulinate synthase (ALAS),
           8-amino-7-oxononanoate synthase (AONS), and
           2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
           responsible for the condensation of L-serine with
           palmitoyl-CoA to produce 3-ketodihydrospingosine, the
           reaction of the first step in sphingolipid biosynthesis.
           ALAS is involved in heme biosynthesis; it catalyzes the
           synthesis of 5-aminolevulinic acid from glycine and
           succinyl-coenzyme A. AONS catalyses the decarboxylative
           condensation of l-alanine and pimeloyl-CoA in the first
           committed step of biotin biosynthesis. KBL catalyzes the
           second reaction step of the metabolic degradation
           pathway for threonine converting 2-amino-3-ketobutyrate,
           to glycine and acetyl-CoA. The members of this CD are
           widely found in all three forms of life..
          Length = 349

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 58/260 (22%), Positives = 98/260 (37%), Gaps = 55/260 (21%)

Query: 158 KNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD--------GSQGS--VH 207
           + R     KLI    + ++ G + P+ E+  +A +    + VD        G  G     
Sbjct: 126 EARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEE 185

Query: 208 NFVDVQDIDCDWYIITG--HKLYGPSGIGGLYSKESRLNEMDPFMGGSEMIADVTQDMVT 265
                 D+D    II G   K +G   +GG             ++ GS+ + D    + +
Sbjct: 186 FGGLTDDVD----IIMGTLGKAFG--AVGG-------------YIAGSKELIDY---LRS 223

Query: 266 YADLPYRFEPGTPPISQAIALGVALDYV----EKIDRKSIFSYERELARYVRSRLKEVRG 321
           YA   + F    PP + A A   AL+ +    E+ +R       +E  RY+R  LKE  G
Sbjct: 224 YAR-GFIFSTSLPP-AVAAAALAALEVLQGGPERRERL------QENVRYLRRGLKE-LG 274

Query: 322 MQLVNESLEDSPIISFRLGNI-HPYDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRA 380
             +         I      +       +  L   GI ++A  +   P        +  R 
Sbjct: 275 FPVGGS--PSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGT-----ARLRI 327

Query: 381 SLAMYNTYEEADKFIETLKK 400
           SL+  +T E+ D+ +E LK+
Sbjct: 328 SLSAAHTKEDIDRLLEALKE 347


>gnl|CDD|38073 KOG2862, KOG2862, KOG2862, Alanine-glyoxylate aminotransferase AGT1
           [General function prediction only].
          Length = 385

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 17/283 (6%)

Query: 130 WYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERT-KLIAITHMSNVLGTVIPIKEICR 188
                +R GA +  V  D      ++E   +L++   K + +TH  +  G +  +  I  
Sbjct: 107 AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISG 166

Query: 189 -IAHERNIPVLVDG--SQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESRLNE 245
            + H+    +LVD   S G     +D   +D   Y  +   L  P+G+  +   +  L  
Sbjct: 167 ELCHKHEALLLVDTVASLGGTEFEMDEWGVDVA-YTGSQKALGAPAGLSIISFSDKALEA 225

Query: 246 MDPFMGGSEMIADVTQDMVTYADLPY--RFEPGTPPISQAIALGVALDYVEKIDRKSIFS 303
           +                +  +       R    TPP+    +L  AL  + +   ++ + 
Sbjct: 226 IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWR 285

Query: 304 YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRAGTH 363
             RE++++++  L+ + G+QL     E       RL  +    +   +D + +   A +H
Sbjct: 286 RHREMSKWLKLSLEAL-GLQLFVVDEE------LRLPTVTTVKVPYGVDWKDVVAYAMSH 338

Query: 364 CANPLLKFLG--IDSLCRASLAMYN-TYEEADKFIETLKKSIQ 403
               +   LG  +  + R  L   N   E  D  +E LK ++Q
Sbjct: 339 YVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ 381


>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase. 
          Length = 367

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 135 QRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSN--VLGTV--IPIKEICRIA 190
           ++ GA LV V   N+   H+ +++  + E T L+   H SN  + G    + + E+  + 
Sbjct: 109 KQSGARLVEVGTTNRT--HLKDYEQAINENTALLMKVHTSNYRIQGFTKEVSLAELVALG 166

Query: 191 HERNIPVLVDGSQGSVHNF 209
            E  +PV  D   GS+ + 
Sbjct: 167 KEHGLPVYYDLGSGSLVDL 185


>gnl|CDD|35276 KOG0053, KOG0053, KOG0053, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 409

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 154 IDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209
           + +    + E TK + +   SN L  V  I+++ R+AH+    V+VD + GS +N 
Sbjct: 152 LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207


>gnl|CDD|31207 COG1003, GcvP, Glycine cleavage system protein P
           (pyridoxal-binding), C-terminal domain [Amino acid
           transport and metabolism].
          Length = 496

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIP 196
           G  +V V  D  G   +D+ + +  +    + IT+  + LG     I+EIC I HE    
Sbjct: 178 GFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITN-PSTLGVFEEDIREICEIVHEAGGQ 236

Query: 197 VLVDGS 202
           V  DG+
Sbjct: 237 VYYDGA 242


>gnl|CDD|30971 COG0626, MetC, Cystathionine beta-lyases/cystathionine
           gamma-synthases [Amino acid transport and metabolism].
          Length = 396

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 163 ERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
             TKL+ +   SN L  V  I  I R+A      V+VD
Sbjct: 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVD 185


>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
           enzymes [Coenzyme metabolism].
          Length = 388

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 51/238 (21%)

Query: 178 GTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLY 237
           G + P+ E+  +A +    + VD +                     G  + GP+G G   
Sbjct: 185 GDIAPLPELVELAEKYGALLYVDEAHA------------------VG--VLGPNGRGLAE 224

Query: 238 SKESRLNEMDPFMG--------------GSEMIADVTQDMVTYADLPYRFEPGTPPISQA 283
                  E+D  +G              GS  + D    +   A  P+ F    PP + A
Sbjct: 225 HFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID---YLRNRAR-PFIFSTALPP-AVA 279

Query: 284 IALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIH 343
            A   AL  +E+          RE  + + +  + +     +     +SPII   LG+  
Sbjct: 280 AAALAALRILEE------GPERRERLQELAAFFRSLLKALGLVLLPSESPIIPVILGDEE 333

Query: 344 P-YDLALFLDGEGIAIRAGTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKK 400
              + +  L  EGI + A      P        +  R +L   +T E+ D+  E L +
Sbjct: 334 RALEASRALLEEGIYVSAIRPPTVPKGT-----ARLRITLTAAHTEEDIDRLAEALSE 386


>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
           family belongs to pyridoxal phosphate (PLP)-dependent
           aspartate aminotransferase superfamily (fold I).  TA
           catalyzes the conversion of L-threonine or
           L-allo-threonine to glycine and acetaldehyde in a
           secondary glycine biosynthetic pathway..
          Length = 338

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 164 RTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVDGS 202
              L+++ + +   GTV P   +K I  +A E  +P+ +DG+
Sbjct: 127 PPSLVSLENTTE-GGTVYPLDELKAISALAKENGLPLHLDGA 167


>gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine
           transaminase K [Amino acid transport and metabolism].
          Length = 420

 Score = 37.6 bits (87), Expect = 0.006
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 38/180 (21%)

Query: 37  QDVIDSIMCT-YSHEYANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFTRSAT 95
           ++         Y+  Y     GL  +  A+   Y    +     ++     E++ T  A 
Sbjct: 54  KNAAKEPSTNQYTRGY-----GLPQLRKALAKAY---SEFYGGLLDPDD--EVLVTAGAN 103

Query: 96  ESINLVSYGWGARHISTGDEIVLSVMEHHSNIIPWYF----LRQRRGASLVWVPID---- 147
           E+I+    G     ++ GDE+++          P++          G + V+VP+     
Sbjct: 104 EAISSALLGL----LNPGDEVIV--------FEPFFDCYIPQVVMAGGTPVFVPLKPKEG 151

Query: 148 ----NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPVLVD 200
               +      +E ++++TE+TK I +    N  G V     ++ I  +  +  + V+ D
Sbjct: 152 NVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD 211


>gnl|CDD|144581 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
           family.  The members of this family are probably all
           pyridoxal-phosphate-dependent aminotransferase enzymes
           with a variety of molecular functions. The family
           includes StsA, StsC, and StsS. The aminotransferase
           activity was demonstrated for purified StsC protein as
           the L-glutamine:scyllo-inosose aminotransferase
           EC:2.6.1.50, which catalyses the first amino transfer in
           the biosynthesis of the streptidine subunit of
           streptomycin.
          Length = 363

 Score = 37.2 bits (87), Expect = 0.007
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 110 ISTGDE-IVLSVMEHHS-NIIPWYFLRQRRGASLVWVPIDNQGF-FHIDEFKNRLTERTK 166
           I  GDE IV S     + N + +       GA  V+V ID   +       +  +T RTK
Sbjct: 62  IGPGDEVIVPSFTFVATANAVLYL------GAKPVFVDIDPDTYNIDPAAIEAAITPRTK 115

Query: 167 LIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQG 204
            I   H+    G    +  I  IA E  +PV+ D +  
Sbjct: 116 AIMPVHL---YGQPADMDAIRAIAAEHGLPVIEDAAHA 150


>gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and
           metabolism].
          Length = 342

 Score = 36.4 bits (84), Expect = 0.013
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 147 DNQGFFHIDEFKNRLT------ERTKLIAITHMSNVLGTVIP---IKEICRIAHERNIPV 197
              G    ++ +  +         T L  + + +   GTV P   ++ I  +  E  +P+
Sbjct: 107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPL 166

Query: 198 LVDGS 202
            +DG+
Sbjct: 167 HMDGA 171


>gnl|CDD|33757 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
           valine-pyruvate) aminotransferase [Amino acid transport
           and metabolism].
          Length = 417

 Score = 35.7 bits (82), Expect = 0.022
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 144 VPIDNQGFF--HIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRI---AHERNIPVL 198
           + +   G F  H+D     + E T  I ++  +N  G V+  +E+ ++   A +  IP++
Sbjct: 157 IELLPAGQFKYHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLI 216

Query: 199 VDGSQG 204
           +D + G
Sbjct: 217 IDNAYG 222


>gnl|CDD|36574 KOG1360, KOG1360, KOG1360, 5-aminolevulinate synthase [Coenzyme
           transport and metabolism].
          Length = 570

 Score = 35.4 bits (81), Expect = 0.032
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%)

Query: 164 RTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIIT 223
             K++A   + ++ G V P++E+C +AH+      +D     VH                
Sbjct: 303 VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLD----EVHAV-------------- 344

Query: 224 GHKLYGPSGIGGLYSKESRLNEMDPF----------MGGSEMIADVTQDMVTYADLPYRF 273
              LYGP G  G+  ++  ++++D            +GG         DM+      + F
Sbjct: 345 --GLYGPRG-AGVGERDGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGFIF 401

Query: 274 EPGTPPISQAIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRGMQLVNESLEDSP 333
               PP+  A AL  A+  ++  + + +    +   +YV+  L E  G+ ++      S 
Sbjct: 402 TTSLPPMVLAGAL-EAVRILKSEEGRVLRRQHQRNVKYVKQLLME-LGIPVIP---NPSH 456

Query: 334 IISFRLGNIH 343
           II  R+G+  
Sbjct: 457 IIPVRVGDAA 466


>gnl|CDD|32083 COG1899, DYS1, Deoxyhypusine synthase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 318

 Score = 32.1 bits (73), Expect = 0.27
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 146 IDNQGFFHIDEFK----NRLTERTKLIAITHMSNVLGTVIPIKE--ICRIAHERNIPV-- 197
           + N+ +   +EF      +L    K  +       LG  +   E  I   A +  +P+  
Sbjct: 130 VPNEEYEVFEEFIREILEKLLGIKKEWSTREFIYELGKRLNDDESSILYTAAKNGVPIFC 189

Query: 198 --LVDGSQGS 205
             + D S G 
Sbjct: 190 PAITDSSIGD 199


>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
           beta-subunits. This family consists of Glycine cleavage
           system P-proteins EC:1.4.4.2 from bacterial, mammalian
           and plant sources. The P protein is part of the glycine
           decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
           annotated as glycine cleavage system or glycine
           synthase. GDC consists of four proteins P, H, L and T.
           The reaction catalysed by this protein is: Glycine +
           lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
           CO2. Alpha-beta-type dimers associate to form an
           alpha(2)beta(2) tetramer, where the alpha- and
           beta-subunits are structurally similar and appear to
           have arisen by gene duplication and subsequent
           divergence with a loss of one active site. The members
           of this CD are widely dispersed among all three forms of
           cellular life..
          Length = 398

 Score = 30.7 bits (70), Expect = 0.69
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 144 VPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIP-IKEICRIAHERNIPVLVDG 201
           VP D  G   ++  K  ++E    + + +  N LG     IKEI  IAH     V VDG
Sbjct: 139 VPSDEGGTVDLEALKEEVSEEVAALMVQY-PNTLGVFEDLIKEIADIAHSAGALVYVDG 196


>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD correspond to DOPA/tyrosine decarboxylase
           (DDC), histidine decarboxylase (HDC), and glutamate
           decarboxylase (GDC). DDC is active as a dimer and
           catalyzes the decarboxylation of tyrosine. GDC catalyzes
           the decarboxylation of glutamate and HDC catalyzes the
           decarboxylation of histidine..
          Length = 345

 Score = 30.6 bits (70), Expect = 0.74
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 31/154 (20%)

Query: 74  DKVRRFINASSVKEI-IFTRSATESI--NLVSYGWGARHISTGD--------EIVLSVME 122
           + + +     S     +FT   +ES    L++    AR               IV S   
Sbjct: 45  NWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQA 104

Query: 123 HHSNIIPWYFLRQRRGAS-----LVWVPIDNQGFFHIDEFKNRLTERTKLIAITHM---- 173
           H S           + A+     +  VP+D  G    +  +  + E         M    
Sbjct: 105 HVSV---------EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVAT 155

Query: 174 --SNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
             +   G + P++EI  +A + ++ + VD + G 
Sbjct: 156 AGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189


>gnl|CDD|35232 KOG0008, KOG0008, KOG0008, Transcription initiation factor TFIID,
            subunit TAF1 [Transcription].
          Length = 1563

 Score = 30.0 bits (67), Expect = 1.3
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 16/89 (17%)

Query: 247  DPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKSIFSYER 306
            DP +  S ++  +            R  P T P    +      DY   I         +
Sbjct: 1257 DPSVSLSSILETIINQA--------RSSPNTYPFPTPVNAKEVKDYYRVITPPM---DLQ 1305

Query: 307  ELARYVRSRLKEVRGMQLVNESLEDSPII 335
               + VR RL E R        LE+ P+I
Sbjct: 1306 TQKKLVRKRLYESR-----EHFLEELPLI 1329


>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
           belongs to pyridoxal phosphate (PLP)-dependent aspartate
           aminotransferase superfamily (fold I). The major groups
           in this CD corresponds to ornithine decarboxylase (ODC),
           arginine decarboxylase (ADC) and lysine decarboxylase
           (LDC). ODC is a dodecamer composed of six homodimers and
           catalyzes the decarboxylation of tryptophan. ADC
           catalyzes the decarboxylation of arginine and LDC
           catalyzes the decarboxylation of lysine. Members of this
           family are widely found in all three forms of life..
          Length = 294

 Score = 29.5 bits (67), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 155 DEFKNRLTERT--KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
           + FK  L E    K   IT+     G    +++I   AH R +PVLVD
Sbjct: 143 ETFKKALIEHPDAKAAVITN-PTYYGICYNLRKIVEEAHHRGLPVLVD 189


>gnl|CDD|39050 KOG3846, KOG3846, KOG3846, L-kynurenine hydrolase [Amino acid
           transport and metabolism].
          Length = 465

 Score = 29.2 bits (65), Expect = 2.0
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 229 GPSGIGGLYSKESRLNEMDPFMGG---SEMIADVTQDMVTYAD---LPYRFEPGTPPISQ 282
           G  GIGGL+  E    E  P + G    +       D V       L +R     PPI  
Sbjct: 281 GAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRIS--NPPIID 338

Query: 283 AIALGVALDYVEKIDRKSIFSYERELARYVRSRLKEVRG 321
            +AL  +L+   + +   +      L  Y+   LK  +G
Sbjct: 339 VVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKG 377


>gnl|CDD|38072 KOG2861, KOG2861, KOG2861, Uncharacterized conserved protein
           [Function unknown].
          Length = 399

 Score = 28.7 bits (64), Expect = 2.8
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 280 ISQAIALGVALDYVEK-IDR--KSIFSYERELARYVRSRLKEVRGMQLVNE 327
           IS A+A  V L Y E  +D+  +S       LA   +  L     ++ + +
Sbjct: 248 ISHALAQSVKLSYFESLVDKTIESTTDIPESLALGGKLTLSREELLKKIGK 298


>gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
           enolase superfamily, subgroup 2. Enzymes of this
           subgroup share three conserved carboxylate ligands for
           the essential divalent metal ion (usually Mg2+), two
           aspartates and a glutamate, and conserved catalytic
           residues,  a Lys-X-Lys motif and a conserved
           histidine-aspartate dyad. This subgroup's function is
           unknown..
          Length = 341

 Score = 28.7 bits (64), Expect = 3.4
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 152 FHIDEFKNRLTERTKLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGSVHNF 209
           + +  FK RL E   +  +    N +G +  +K+I  +A    +PV+   SQ  ++N+
Sbjct: 232 YTVYGFK-RLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHASQ--IYNY 286


>gnl|CDD|145208 pfam01916, DS, Deoxyhypusine synthase.  Eukaryotic initiation
           factor 5A (eIF-5A) contains an unusual amino acid,
           hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The
           first step in the post-translational formation of
           hypusine is catalysed by the enzyme deoxyhypusine
           synthase (DS) EC:1.1.1.249. The modified version of
           eIF-5A, and DS, are required for eukaryotic cell
           proliferation.
          Length = 297

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 148 NQGFFHIDEFKNRLTERTKLIAITHMSNVLGTVIPI-KEICRIAHERNIPV----LVDGS 202
               F  ++      +  K+   +   + LG  I   + +   AH+ NIP+    L DGS
Sbjct: 124 LMPIF--EKMLEEQEKEGKIWTPSEFIHELGKEINDERSVLYWAHKNNIPIFCPALTDGS 181

Query: 203 QG 204
            G
Sbjct: 182 LG 183


>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain.  This family consists
           of various enzymes that use FAD as a co-factor, most of
           the enzymes are similar to oxygen oxidoreductase. One of
           the enzymes Vanillyl-alcohol oxidase (VAO) has a solved
           structure, the alignment includes the FAD binding site,
           called the PP-loop, between residues 99-110. The FAD
           molecule is covalently bound in the known structure,
           however the residue that links to the FAD is not in the
           alignment. VAO catalyses the oxidation of a wide variety
           of substrates, ranging form aromatic amines to
           4-alkylphenols. Other members of this family include
           D-lactate dehydrogenase, this enzyme catalyses the
           conversion of D-lactate to pyruvate using FAD as a
           co-factor; mitomycin radical oxidase, this enzyme
           oxidizes the reduced form of mitomycins and is involved
           in mitomycin resistance. This family includes MurB an
           UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
           EC:1.1.1.158. This enzyme is involved in the
           biosynthesis of peptidoglycan.
          Length = 138

 Score = 27.6 bits (62), Expect = 6.0
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVD 211
           +  I R+A+E  +PVLV   +G   + + 
Sbjct: 13  VAAIVRLANEHGLPVLV---RGGGSSLLG 38


>gnl|CDD|36573 KOG1359, KOG1359, KOG1359, Glycine
           C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase
           [Amino acid transport and metabolism].
          Length = 417

 Score = 27.3 bits (60), Expect = 7.0
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 110 ISTGDEIVLSVMEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIA 169
           I T ++ V S   +H++II    L +R     V        F       +    R KL+ 
Sbjct: 147 ILTPEDAVFSDELNHASIIDGIRLCKRYRHVDV--------FDLEHCLISACKMRLKLVV 198

Query: 170 ITHMSNVLGTVIPIKEICRIAHERNIPVLVDGSQGS 205
              + ++ G + P++EI ++A +    + +D    +
Sbjct: 199 TDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHAT 234


>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 933

 Score = 27.5 bits (61), Expect = 7.2
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 275 PGTPPISQAIALGVALDY--VEKIDRKSIF------SYERELARYVRSRLKEVRGMQLVN 326
           P T P + AIA+   LDY  VE    K I       S  ++        L+  +G +L  
Sbjct: 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEG 296

Query: 327 ESLEDSPIISFRLGNIHPYDLALFL---DGEGI 356
              E  P   F      P  L   +   DG G+
Sbjct: 297 LRYE-HPFYDFVYDRAFPVILGDHVTLDDGTGL 328


>gnl|CDD|37251 KOG2040, KOG2040, KOG2040, Glycine dehydrogenase (decarboxylating)
           [Amino acid transport and metabolism].
          Length = 1001

 Score = 27.2 bits (60), Expect = 7.7
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 138 GASLVWVPIDNQGFFHIDEFKNRLTERTKLIA---ITHMSNVLGTVIP-IKEICRIAHER 193
           G  +V V  D  G   + + K +  +    +A   +T+ S   G     I +IC I HE 
Sbjct: 651 GMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEH 709

Query: 194 NIPVLVDGS 202
              V +DG+
Sbjct: 710 GGQVYLDGA 718


>gnl|CDD|37379 KOG2168, KOG2168, KOG2168, Cullins [Cell cycle control, cell
           division, chromosome partitioning].
          Length = 835

 Score = 27.2 bits (60), Expect = 8.6
 Identities = 13/108 (12%), Positives = 29/108 (26%)

Query: 14  ILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHYMANAVTDKYEKAR 73
            L    +       ++  S + P+            E  +I+    Y+ N V  K  KA 
Sbjct: 148 ALLASSQDFIDASRESEPSQRSPRPNSPGRSSLKGIELNSIYARKAYIYNEVLHKLNKAG 207

Query: 74  DKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSVM 121
                 +  +   + +      +    +         +T D+      
Sbjct: 208 QPNLVDLLFNVASQSLGDEDIADMWTNLQSMTQLTDPATRDDSKNRSG 255


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,027,033
Number of extensions: 272598
Number of successful extensions: 811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 53
Length of query: 406
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,189,273
Effective search space: 1298674630
Effective search space used: 1298674630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)