BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] (406 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY Sbjct: 1 MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60 Query: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV Sbjct: 61 MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120 Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV Sbjct: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180 Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE Sbjct: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240 Query: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS Sbjct: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300 Query: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA Sbjct: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360 Query: 361 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ Sbjct: 361 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406 >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 80.9 bits (198), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 158/356 (44%), Gaps = 47/356 (13%) Query: 70 EKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDEIVLSVMEHHSNI 127 E++R + F A ++FT SATE+ N L + + H + D + +S +EH + Sbjct: 48 EESRRIIADFCGAKP-DHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY 106 Query: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTK-----LIAITHMSNVLGTVIP 182 +F + + +P+ ++G I + L +R +IA+ ++N G + P Sbjct: 107 AGGHFPSHK----IHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP 162 Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242 IKEI +I E ++VD Q + + +++I D+ II+ HKL P G G L +E Sbjct: 163 IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDI 222 Query: 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS-- 300 L P + G + YA + A+A A V+ I ++S Sbjct: 223 LLP-SPLLRGGDQEKGQRAGTENYAVIG----------GFAVA---AQQMVKDIQKRSSR 268 Query: 301 IFS----YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGI 356 +F+ E+EL + + + + + + ++ + F + + L + LD EGI Sbjct: 269 VFAIRDYLEQELKKLIPNIIIYGKDAERISNTC------CFSIPFLKAEVLQIALDLEGI 322 Query: 357 AIRAGTHCA------NPLLKFLGIDS---LCRASLAMYNTYEEADKFIETLKKSIQ 403 A+ AG+ C+ N +L +G D+ R S T E+ D F+ L+K I+ Sbjct: 323 AVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378 >gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 401 Score = 26.6 bits (57), Expect = 0.86, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200 K+I + ++ G + PIKEIC +A + N +D Sbjct: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213 >gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQ--DIDCDWYIITGHKLYGPSGIGGLYSKE 240 I++IC+I H++ + + S+ +++ DI C Y ++ LY + K+ Sbjct: 183 IRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242 Query: 241 SRLNEMDPFMGGSEMIADV 259 ++ + ++ D+ Sbjct: 243 YINEQLKALLSAVAIVLDM 261 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 23.9 bits (50), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Query: 51 YANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFT-RSATESINLVSYGWGARH 109 + ++H+ + Y + VT+K+E+ +D + ++++I+ R + + I L G + Sbjct: 216 FLHLHKEIPYSSCVVTEKWEEKKD------GSILIRQVIYVERPSQKKIMLGKNGQNIKT 269 Query: 110 IS 111 IS Sbjct: 270 IS 271 >gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%) Query: 227 LYGPSGIGGLYSKESRLNEMDP---------FMG-GSEMIADVTQDMVTYADL----PYR 272 +YG G GG Y +S L +++ F G GS ++ + D + D+ YR Sbjct: 145 IYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYR 204 Query: 273 FEPGTPPISQAIALGVALDYVEKIDRKS 300 + P ++ A VE++DRK Sbjct: 205 Y---IPHHIHSVNNSNAKSDVERVDRKG 229 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,611 Number of Sequences: 1233 Number of extensions: 11042 Number of successful extensions: 30 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 7 length of query: 406 length of database: 328,796 effective HSP length: 76 effective length of query: 330 effective length of database: 235,088 effective search space: 77579040 effective search space used: 77579040 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)