BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781062|ref|YP_003065475.1| putative aminotransferase
involved in iron-sulfur cluster biogenesis [Candidatus Liberibacter
asiaticus str. psy62]
         (406 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/406 (100%), Positives = 406/406 (100%)

Query: 1   MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60
           MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY
Sbjct: 1   MTFDINSIRKDFPILGRDIRKKPLIYFDNAASAQKPQDVIDSIMCTYSHEYANIHRGLHY 60

Query: 61  MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120
           MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV
Sbjct: 61  MANAVTDKYEKARDKVRRFINASSVKEIIFTRSATESINLVSYGWGARHISTGDEIVLSV 120

Query: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180
           MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV
Sbjct: 121 MEHHSNIIPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTKLIAITHMSNVLGTV 180

Query: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240
           IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE
Sbjct: 181 IPIKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKE 240

Query: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300
           SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS
Sbjct: 241 SRLNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS 300

Query: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360
           IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA
Sbjct: 301 IFSYERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGIAIRA 360

Query: 361 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406
           GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ
Sbjct: 361 GTHCANPLLKFLGIDSLCRASLAMYNTYEEADKFIETLKKSIQFFQ 406


>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 383

 Score = 80.9 bits (198), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 158/356 (44%), Gaps = 47/356 (13%)

Query: 70  EKARDKVRRFINASSVKEIIFTRSATESIN--LVSYGWGARHISTGDEIVLSVMEHHSNI 127
           E++R  +  F  A     ++FT SATE+ N  L  + +   H  + D + +S +EH +  
Sbjct: 48  EESRRIIADFCGAKP-DHVVFTSSATEAANWVLTPHFYQGSHKISIDSLYISAIEHPAVY 106

Query: 128 IPWYFLRQRRGASLVWVPIDNQGFFHIDEFKNRLTERTK-----LIAITHMSNVLGTVIP 182
              +F   +    +  +P+ ++G   I    + L +R       +IA+  ++N  G + P
Sbjct: 107 AGGHFPSHK----IHKIPVLSKGIVDIQALTDFLEQRNSTCGIPMIAVMFVNNETGVIQP 162

Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQDIDCDWYIITGHKLYGPSGIGGLYSKESR 242
           IKEI +I  E    ++VD  Q +    + +++I  D+ II+ HKL  P G G L  +E  
Sbjct: 163 IKEIAQIVKEYQGILVVDAVQAAGRIPLSIEEIKADFLIISSHKLGAPVGAGALVFREDI 222

Query: 243 LNEMDPFMGGSEMIADVTQDMVTYADLPYRFEPGTPPISQAIALGVALDYVEKIDRKS-- 300
           L    P + G +           YA +             A+A   A   V+ I ++S  
Sbjct: 223 LLP-SPLLRGGDQEKGQRAGTENYAVIG----------GFAVA---AQQMVKDIQKRSSR 268

Query: 301 IFS----YERELARYVRSRLKEVRGMQLVNESLEDSPIISFRLGNIHPYDLALFLDGEGI 356
           +F+     E+EL + + + +   +  + ++ +        F +  +    L + LD EGI
Sbjct: 269 VFAIRDYLEQELKKLIPNIIIYGKDAERISNTC------CFSIPFLKAEVLQIALDLEGI 322

Query: 357 AIRAGTHCA------NPLLKFLGIDS---LCRASLAMYNTYEEADKFIETLKKSIQ 403
           A+ AG+ C+      N +L  +G D+     R S     T E+ D F+  L+K I+
Sbjct: 323 AVSAGSACSSGKIKKNHVLAAMGFDTSQGAVRVSCGDSTTQEDIDIFLNALQKIIR 378


>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score = 26.6 bits (57), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 166 KLIAITHMSNVLGTVIPIKEICRIAHERNIPVLVD 200
           K+I    + ++ G + PIKEIC +A + N    +D
Sbjct: 179 KIIIFESIYSMDGDIAPIKEICDLADQYNAITYID 213


>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 183 IKEICRIAHERNIPVLVDGSQGSVHNFVDVQ--DIDCDWYIITGHKLYGPSGIGGLYSKE 240
           I++IC+I H++ +  +      S+    +++  DI C  Y ++   LY        + K+
Sbjct: 183 IRDICKILHQKEVGAVFICDPSSIAWIFNIRGFDIPCSPYPLSRAILYADGKAEIFFDKQ 242

Query: 241 SRLNEMDPFMGGSEMIADV 259
               ++   +    ++ D+
Sbjct: 243 YINEQLKALLSAVAIVLDM 261


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 23.9 bits (50), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 51  YANIHRGLHYMANAVTDKYEKARDKVRRFINASSVKEIIFT-RSATESINLVSYGWGARH 109
           + ++H+ + Y +  VT+K+E+ +D       +  ++++I+  R + + I L   G   + 
Sbjct: 216 FLHLHKEIPYSSCVVTEKWEEKKD------GSILIRQVIYVERPSQKKIMLGKNGQNIKT 269

Query: 110 IS 111
           IS
Sbjct: 270 IS 271


>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 242

 Score = 23.1 bits (48), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)

Query: 227 LYGPSGIGGLYSKESRLNEMDP---------FMG-GSEMIADVTQDMVTYADL----PYR 272
           +YG  G GG Y  +S L +++          F G GS ++  +  D +   D+     YR
Sbjct: 145 IYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYR 204

Query: 273 FEPGTPPISQAIALGVALDYVEKIDRKS 300
           +    P    ++    A   VE++DRK 
Sbjct: 205 Y---IPHHIHSVNNSNAKSDVERVDRKG 229


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,611
Number of Sequences: 1233
Number of extensions: 11042
Number of successful extensions: 30
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 406
length of database: 328,796
effective HSP length: 76
effective length of query: 330
effective length of database: 235,088
effective search space: 77579040
effective search space used: 77579040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)