HHsearch alignment for GI: 254781063 and conserved domain: TIGR02159
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=99.92 E-value=2.2e-25 Score=173.45 Aligned_cols=86 Identities=34% Similarity=0.602 Sum_probs=81.0
Q ss_pred CCCCCCC-CCEEEECCEEEEEEECCCEEEEE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCH
Q ss_conf 8888899-84332040132156039969999-996589885178999999999970998661699999778898330698
Q gi|254781063|r 43 VYDPEIP-CDIFELGLIYKIDVENDYMVKIL-MTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSE 120 (129)
Q Consensus 43 V~DPEl~-v~IvdLGlV~~i~i~~~g~V~V~-l~lT~~~CP~~~~i~~~i~~al~~~~gv~~V~V~~~~~p~W~~~~is~ 120 (129)
T Consensus 1 VPDPEiPv~s~~DLGmVR~V~v~g~G-~~v~s~tPTySGCPA~~~i~~~i~~A~~~~GW~~~VeV~~~L~P~WTTdwITe 79 (152)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVEVDGEG-VVVKSFTPTYSGCPALEVIRQDIRDALRALGWVEEVEVKTSLDPAWTTDWITE 79 (152)
T ss_pred CCCCCCCEEEEECCCEEEEEEECCCC-EEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 98888770221106534357864794-79888745877723689999999999974789751158877189878400270
Q ss_pred HHHHHCCCC
Q ss_conf 999960799
Q gi|254781063|r 121 EAQIATGYY 129 (129)
Q Consensus 121 ~~r~~lG~~ 129 (129)
T Consensus 80 ~are~Lr~y 88 (152)
T TIGR02159 80 DAREKLREY 88 (152)
T ss_pred HHHHHHHHC
T ss_conf 036888850