RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781063|ref|YP_003065476.1| hypothetical protein
CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>3cq1_A Putative uncharacterized protein TTHB138;
DTDP-4-keto-L-rhamnose reductase, plasmid,
oxidoreductase, structural genomics, NPPSFA; 1.90A
{Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:)
Length = 103
Score = 110 bits (276), Expect = 9e-26
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 35 DIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENAV 94
A L+ VYDPE+ D+ LGLIY + VE + TLT PGCP+ + + + A+
Sbjct: 10 QAWALLEAVYDPELGLDVVNLGLIYDLVVEPP-RAYVRXTLTTPGCPLHDSLGEAVRQAL 68
Query: 95 GAVEGISGVEVSITFDPPWTPDLMSEEAQIATGY 128
+ G+ VEV +TF+PPWT +SE+A+ G+
Sbjct: 69 SRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
>1uwd_A Hypothetical protein TM0487; structural genomics, unknown
function, contains PAAD domain, similar to PAAD protein,
unknown activity; NMR {Thermotoga maritima} (A:1-88)
Length = 88
Score = 99.1 bits (247), Expect = 2e-22
Identities = 38/88 (43%), Positives = 56/88 (63%)
Query: 26 PEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGD 85
P + D++ ALK V D E+ D+ LGL+Y I +++ VK+LMT+T P CP+AG
Sbjct: 1 PMSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGM 60
Query: 86 MPKWIENAVGAVEGISGVEVSITFDPPW 113
+ E A+ +EG++ VEV +TFDPPW
Sbjct: 61 ILSDAEEAIKKIEGVNNVEVELTFDPPW 88
>3lno_A Putative uncharacterized protein; alpha-beta fold,
structural genomics, center for structural genomics of
infectious diseases, csgid; 2.10A {Bacillus anthracis}
(A:1-92)
Length = 92
Score = 95.6 bits (238), Expect = 2e-21
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 25 PPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAG 84
E N + A L+ V DPE+ DI LGL+Y + + + I T T+ GCP AG
Sbjct: 2 NAXSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITXTXTSIGCPXAG 61
Query: 85 DMPKWIENAV-GAVEGISGVEVSITFDPPWT 114
+ ++ + V ++ +EV++ ++PPW+
Sbjct: 62 QIVSDVKKVLSTNVPEVNEIEVNVVWNPPWS 92
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} (A:)
Length = 72
Score = 26.2 bits (58), Expect = 1.6
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
I + A++G++ ++S +T+D T D + +E G+
Sbjct: 20 INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain,
structural protein; 2.80A {Mus musculus} (A:131-199)
Length = 69
Score = 26.2 bits (58), Expect = 1.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 45 DPEIPCDIFELGL 57
D + IFELGL
Sbjct: 54 DKSVAFKIFELGL 66
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 25.9 bits (56), Expect = 1.9
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 21 ESTIPPEDLERISNDIIAALKT 42
E +P L ++I ++
Sbjct: 147 EKALPLL-LSNPPRNMIGQSQS 167
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, metal transport; NMR
{Helicobacter pylori 26695} (A:)
Length = 66
Score = 25.8 bits (57), Expect = 2.2
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE VG +EG+S ++VS + FD P T DL+ +EA + G
Sbjct: 19 IEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLI-KEALLDAGQ 63
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution
structure, structural genomics, structural proteomics in
europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
(A:)
Length = 90
Score = 25.6 bits (56), Expect = 2.3
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE+ + A++ +S + VS + ++ +A A
Sbjct: 21 IESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSP 66
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold,
beta-alpha-beta-BETA-alpha-beta structure, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
1y3k_A (A:)
Length = 77
Score = 25.5 bits (56), Expect = 2.4
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + EGI + V+ + ++P M E G+
Sbjct: 21 IERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66
>2gcf_A Cation-transporting ATPase PACS; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, structural genomics,
structural proteomics in europe; NMR {Synechocystis SP}
(A:)
Length = 73
Score = 25.5 bits (56), Expect = 2.5
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE A+ V G+ +V+ +++ TP ++ +A GY
Sbjct: 21 IERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQIL-TDAVERAGY 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain,
structural protein; 3.00A {Mus musculus} (A:353-422)
Length = 70
Score = 25.4 bits (56), Expect = 2.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 45 DPEIPCDIFELGL 57
D + IFELGL
Sbjct: 54 DKSVAFKIFELGL 66
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta
sheet, sugar binding protein, signaling protein; HET:
CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A* (A:53-126)
Length = 74
Score = 25.2 bits (55), Expect = 3.1
Identities = 4/47 (8%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 32 ISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAP 78
++D++ + + + ++ ++Y V+ L+
Sbjct: 30 TADDVVYSFGLLKAKPELDQRGINKWVTSVEKVDEYKVRF--RLSEA 74
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} (A:1-72)
Length = 72
Score = 25.1 bits (55), Expect = 3.6
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + + G++ V+ + +DP T +E GY
Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase;
uridine-diphospho-N-acetylglucosamine,
N-acetylglucosamine- 1-phosphate, transferase; 1.90A
{Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
(A:426-486)
Length = 61
Score = 25.0 bits (55), Expect = 3.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 88 KWIENAVGAVEGISGVEVS 106
KW+ G ++ VEV
Sbjct: 19 KWVIQNGGVIDNQGLVEVD 37
>1cpz_A Protein (COPZ); copper chaperone, metal transport; NMR
{Enterococcus hirae} (A:)
Length = 68
Score = 25.1 bits (55), Expect = 3.9
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE AVG + G+ V+V + FD +A GY
Sbjct: 18 IEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR
{Homo sapiens} (A:)
Length = 84
Score = 24.8 bits (54), Expect = 4.1
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE +G ++G+ ++VS I + P ++ A G+
Sbjct: 27 IEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF 72
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease,
metal homeostasis, chaperone, ION transport, metal-
binding, alternative splicing; 1.80A {Homo sapiens} PDB:
2k1r_A (B:)
Length = 75
Score = 24.7 bits (54), Expect = 4.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE +G V G+ ++VS I +DP +EA G+
Sbjct: 20 IEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} (A:)
Length = 80
Score = 24.8 bits (54), Expect = 4.7
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + +EG++ V+ + ++P +EA GY
Sbjct: 21 IEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 66
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} (A:73-151)
Length = 79
Score = 24.8 bits (54), Expect = 4.9
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + +EG++ V+ + ++P +EA GY
Sbjct: 20 IEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 65
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens} (A:1-104)
Length = 104
Score = 24.5 bits (53), Expect = 5.1
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE +G + G+ ++VS + +DP T + + A A
Sbjct: 38 IEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPP 83
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like
fold, ATP- binding, ethylene signaling pathway,
hydrolase, ION transport; 1.70A {Arabidopsis thaliana}
(X:)
Length = 74
Score = 24.3 bits (53), Expect = 5.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+E A+ V G+ V+ + FDP + +E G+
Sbjct: 20 VEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGF 65
>2ew9_A Copper-transporting ATPase 2; copper trafficking,
ferrodoxin-like fold, structural genomics, structural
proteomics in europe, spine, hydrolase; NMR {Homo
sapiens} (A:77-149)
Length = 73
Score = 24.4 bits (53), Expect = 5.4
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE+ + GI+ V+ + FDP + G+
Sbjct: 22 IESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGF 67
>1yjr_A Copper-transporting ATPase 1; metallochaperone,
protein-protein interaction, copper(I), metal
homeostasis, structural proteomics in europe, spine; NMR
{Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A (A:)
Length = 75
Score = 24.3 bits (53), Expect = 5.5
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE+++ GI V+ I +DP + G+
Sbjct: 22 IESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A
{Bacillus subtilis} (A:)
Length = 69
Score = 24.3 bits (53), Expect = 5.5
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+E +VG ++G+S V V+ ++FD +A GY
Sbjct: 20 VETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
>1opz_A Potential copper-transporting ATPase; mutation, folding,
abbab fold, hydrolase; NMR {Bacillus subtilis} (A:)
Length = 76
Score = 24.4 bits (53), Expect = 5.5
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + + G++ V+ + +DP T +E GY
Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens} (A:105-202)
Length = 98
Score = 24.5 bits (53), Expect = 5.7
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + +EG+ + VS + ++P A G+
Sbjct: 36 IEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGF 81
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold,
beta-alpha-beta-BETA-alpha-beta, structural genomics,
hydrolase, membrane protein; NMR {Synechocystis SP} PDB:
2ofh_X (X:)
Length = 111
Score = 24.2 bits (52), Expect = 5.9
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE ++ ++G++ V+ +T+DP ++ +E A GY
Sbjct: 21 IEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGY 66
>1yle_A Arginine N-succinyltransferase, alpha chain; structural
genomics, acyltransferase, arginine metabolism, PSI,
protein structure initiative; 1.70A {Pseudomonas
aeruginosa} (A:)
Length = 342
Score = 24.3 bits (53), Expect = 5.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 95 GAVEGISGVEVSITFDPPW 113
G + G S + S F P+
Sbjct: 71 GELVGCSAIVASAGFSEPF 89
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal
binding protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} (A:)
Length = 72
Score = 24.4 bits (53), Expect = 5.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
++ A+ VEG+S V+V+ +TFD T +A GY
Sbjct: 21 VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, dhqase,
dehydroshikimate, PSI-2, protein structure initiative;
HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}
(A:)
Length = 231
Score = 24.1 bits (52), Expect = 6.4
Identities = 7/66 (10%), Positives = 16/66 (24%), Gaps = 11/66 (16%)
Query: 13 ADKIALSPESTIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKIL 72
A +I + P + I+ ++ E + E + +
Sbjct: 3 AXRIVAP----VXPRHFDEAQAIDISK-------YEDVNLIEWRADFLPKDEIVAVAPAI 51
Query: 73 MTLTAP 78
A
Sbjct: 52 FEKFAG 57
>2ew9_A Copper-transporting ATPase 2; copper trafficking,
ferrodoxin-like fold, structural genomics, structural
proteomics in europe, spine, hydrolase; NMR {Homo
sapiens} (A:1-76)
Length = 76
Score = 24.0 bits (52), Expect = 6.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + G+ V V+ I +DP L + G+
Sbjct: 22 IERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGF 67
>2kkh_A Putative heavy metal transporter; zinc transport, metal
binding, metal selectivity, ferredoxin fold,
ATP-binding, hydrolase; NMR {Arabidopsis thaliana} (A:)
Length = 95
Score = 24.1 bits (52), Expect = 6.6
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IEN + +++G+ V + D +A
Sbjct: 34 IENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARL 79
>1mwy_A ZNTA; open-faced beta-sandwich fold,
beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR
{Escherichia coli} (A:)
Length = 73
Score = 23.9 bits (52), Expect = 6.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+ENAV + G++ V+V + D + A GY
Sbjct: 21 VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVE--SALQKAGY 64
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain,
hydrolase; NMR {Homo sapiens} (A:)
Length = 72
Score = 24.0 bits (52), Expect = 7.3
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + G+ + VS + +DP T A G+
Sbjct: 21 IEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase;
HET: MTE; 1.70A {Gallus gallus} (A:235-372)
Length = 138
Score = 24.1 bits (52), Expect = 7.5
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 65 NDYMVKILMTLTAPGCPVAGDMPKWIENAV-GAVEGISGVEVSITFDPPWTP 115
+ V+ +T PG V A G + V+VS+ W
Sbjct: 15 QELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKV 66
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE
HEM EPE; 1.90A {Gallus gallus} (A:329-466)
Length = 138
Score = 24.1 bits (52), Expect = 7.5
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 65 NDYMVKILMTLTAPGCPVAGDMPKWIENAV-GAVEGISGVEVSITFDPPWTP 115
+ V+ +T PG V A G + V+VS+ W
Sbjct: 15 QELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKV 66
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} (A:1-73)
Length = 73
Score = 23.9 bits (52), Expect = 8.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 90 IENAVGAVEGISGVEVSIT 108
I+ + V GI+ + I
Sbjct: 23 IKACLKNVPGINSLNFDIE 41
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase;
NMR {Homo sapiens} (A:)
Length = 79
Score = 23.6 bits (51), Expect = 8.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE +G V G+ ++VS I +DP +EA G+
Sbjct: 26 IEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 71
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
(A:1-112)
Length = 112
Score = 23.7 bits (51), Expect = 8.6
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 81 PVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDL 117
P+A V +V + S P T
Sbjct: 8 PIAPAKVLPDAQTVTSVRHWTDTLFSFRVTRPQTLRF 44
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,094,670
Number of extensions: 47510
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 55
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)