RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781063|ref|YP_003065476.1| hypothetical protein
CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural
genomics, center for structural genomics of infectious
diseases, csgid; 2.10A {Bacillus anthracis}
Length = 108
Score = 116 bits (292), Expect = 2e-27
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 30 ERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKW 89
E N + A L+ V DPE+ DI LGL+Y + + + I MT+T+ GCP+AG +
Sbjct: 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSD 66
Query: 90 IENAVG-AVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127
++ + V ++ +EV++ ++PPW+ + MS A+IA G
Sbjct: 67 VKKVLSTNVPEVNEIEVNVVWNPPWSKERMSRMAKIALG 105
>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function,
contains PAAD domain, similar to PAAD protein, unknown
activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB:
1wcj_A
Length = 103
Score = 111 bits (280), Expect = 3e-26
Identities = 44/102 (43%), Positives = 64/102 (62%)
Query: 26 PEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGD 85
P + D++ ALK V D E+ D+ LGL+Y I +++ VK+LMT+T P CP+AG
Sbjct: 1 PMSKKVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGM 60
Query: 86 MPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127
+ E A+ +EG++ VEV +TFDPPWTP+ MS E + G
Sbjct: 61 ILSDAEEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFG 102
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose
reductase, plasmid, oxidoreductase, structural genomics,
NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A
3cq3_A*
Length = 103
Score = 112 bits (281), Expect = 3e-26
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93
A L+ VYDPE+ D+ LGLIY + VE + MTLT PGCP+ + + + A
Sbjct: 9 AQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAY-VRMTLTTPGCPLHDSLGEAVRQA 67
Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEAQIATGY 128
+ + G+ VEV +TF+PPWT +SE+A+ G+
Sbjct: 68 LSRLPGVEEVEVEVTFEPPWTLARLSEKARRLLGW 102
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha-
beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1
PDB: 1mwz_A
Length = 73
Score = 27.0 bits (60), Expect = 1.2
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+ENAV + G++ V+V + D + E A GY
Sbjct: 21 VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQV--ESALQKAGY 64
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist
metal-binding, oxidoreductase; NMR {Pseudomonas
aeruginosa} PDB: 2kt3_A
Length = 69
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPD 116
++ A+ V G+ VS + P +PD
Sbjct: 18 VKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPD 51
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A
2ggp_B
Length = 72
Score = 25.5 bits (56), Expect = 3.3
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
I + A++G++ ++S +T+D T D + +E G+
Sbjct: 20 INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding
protein, perisplasm, structural genomics; 2.00A
{Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A
1afj_A 2hqi_A
Length = 72
Score = 25.5 bits (56), Expect = 3.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
++ A+ VEG+S V+V+ +TFD T +A GY
Sbjct: 21 VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus}
Length = 302
Score = 25.6 bits (55), Expect = 3.5
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 79 GCPVAGDMPKWIENAVGAVEGISGVEVSI 107
D+ K+ + + +I
Sbjct: 56 DFGNGADLEKYFYGEIALLVATDPDADAI 84
>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor,
molybdopterin, peroxisomes, intramolecular electron
transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis
thaliana} SCOP: b.1.18.6 d.176.1.1
Length = 393
Score = 25.1 bits (54), Expect = 4.8
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 42 TVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGI 100
++ P + D + D+ V+ + V G + G GI
Sbjct: 242 KMFPPSVNWDNIN---WSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGI 298
Query: 101 SGVEVSITFDPPWTP 115
V++S+ W
Sbjct: 299 ERVDISLDGGKNWVE 313
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding,
trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Length = 71
Score = 24.9 bits (55), Expect = 5.2
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPD 116
IE A+ V G+ +V+ +++ TP
Sbjct: 21 IERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQ 54
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab
fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1
PDB: 1oq3_A 1oq6_A
Length = 76
Score = 24.7 bits (54), Expect = 6.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + + G++ V+ + +DP T +E GY
Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
>1jww_A Potential copper-transporting ATPase;
beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR
{Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Length = 80
Score = 24.7 bits (54), Expect = 6.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + +EG++ V+ + ++P +EA GY
Sbjct: 21 IEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGY 66
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB:
2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Length = 372
Score = 24.7 bits (53), Expect = 6.8
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 65 NDYMVKILMTLTAPGCPV-AGDMPKWIENAVGAVEGISGVEVSITFDPPWTP 115
+ V+ +T PG V G++ G + V+VS+ W
Sbjct: 249 QELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKV 300
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphatase, transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli
K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 24.5 bits (53), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 24 IPPEDLERISNDIIAALKT----VYD 45
+P + L R+SN II + VYD
Sbjct: 488 LPYDFLGRVSNRIINEVNGISRVVYD 513
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 24.5 bits (53), Expect = 7.5
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 13 ADKIALSPES-TIP------PEDLERISNDIIAAL 40
+ ++ + + IP DL +S I +
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 24.6 bits (52), Expect = 7.7
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 14 DKIALSPESTIPPEDLERISNDIIAALKTV 43
D + P T+ +++ + +AL V
Sbjct: 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.6 bits (52), Expect = 7.9
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 27 EDLERISNDIIAALKTVY-DPEIPCDIFELGLIYKIDVE 64
+ L+++ A+LK +Y D P L K +E
Sbjct: 20 QALKKLQ----ASLK-LYADDSAP------ALAIKATME 47
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium
tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A*
2ao2_A*
Length = 166
Score = 24.4 bits (53), Expect = 7.9
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 6 PDTENNIADKI-ALSPESTIPPEDLERISNDIIAALKTV 43
K+ + I P+ + R+ +D I A + +
Sbjct: 37 SGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAI 75
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal
homeostasis, chaperone, ION transport, metal- binding,
alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Length = 75
Score = 24.3 bits (53), Expect = 8.3
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE +G V G+ ++VS I +DP +EA G+
Sbjct: 20 IEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
>1yg0_A COP associated protein; open-faced beta-sandwich, missing
C-terminal beta-sheet, metal transport; NMR
{Helicobacter pylori 26695}
Length = 66
Score = 24.3 bits (53), Expect = 8.4
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE VG +EG+S ++VS + FD P T DL+ +EA + G
Sbjct: 19 IEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLI-KEALLDAGQ 63
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway;
2.10A {Thermus thermophilus HB8} PDB: 2ywc_A*
Length = 503
Score = 24.2 bits (52), Expect = 8.6
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 24 IPPEDLERISNDIIAALKT----VYD 45
+P E L+ + I + VYD
Sbjct: 466 LPLEFLDEAARRITRRVPEIGRVVYD 491
>1qup_A Superoxide dismutase 1 copper chaperone; two domains,
beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A
{Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Length = 222
Score = 24.1 bits (52), Expect = 9.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 90 IENAVGAVEGISGVEVSIT 108
I+ + V GI+ + I
Sbjct: 23 IKACLKNVPGINSLNFDIE 41
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein
complex, heterodimer, metallochaperone, amyotrophic
lateral sclerosis; 2.90A {Saccharomyces cerevisiae}
SCOP: b.1.8.1 d.58.17.1
Length = 249
Score = 24.1 bits (52), Expect = 9.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 90 IENAVGAVEGISGVEVSI 107
I+ + V GI+ + I
Sbjct: 24 IKACLKNVPGINSLNFDI 41
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,241,002
Number of extensions: 56011
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 40
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.6 bits)