RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781063|ref|YP_003065476.1| hypothetical protein
CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga
maritima [TaxId: 2336]}
Length = 102
Score = 111 bits (280), Expect = 1e-26
Identities = 43/94 (45%), Positives = 62/94 (65%)
Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93
D++ ALK V D E+ D+ LGL+Y I +++ VK+LMT+T P CP+AG + E A
Sbjct: 8 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEA 67
Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEAQIATG 127
+ +EG++ VEV +TFDPPWTP+ MS E + G
Sbjct: 68 IKKIEGVNNVEVELTFDPPWTPERMSPELREKFG 101
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 101 bits (253), Expect = 2e-23
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 34 NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGCPVAGDMPKWIENA 93
A L+ VYDPE+ D+ LGLIY + V + MTLT PGCP+ + + + A
Sbjct: 4 AQAWALLEAVYDPELGLDVVNLGLIYDLVV-EPPRAYVRMTLTTPGCPLHDSLGEAVRQA 62
Query: 94 VGAVEGISGVEVSITFDPPWTPDLMSEEA 122
+ + G+ VEV +TF+PPWT +SE+A
Sbjct: 63 LSRLPGVEEVEVEVTFEPPWTLARLSEKA 91
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 25.1 bits (55), Expect = 1.9
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
I + A++G++ ++S +T+D T D + +E G+
Sbjct: 20 INTQLRALKGVTKCDISLVTNECQVTYDNEVTADSI-KEIIEDCGF 64
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 73
Score = 25.2 bits (55), Expect = 2.0
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+ENAV + G++ V+V + D + E A GY
Sbjct: 21 VENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQV--ESALQKAGY 64
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia
metallidurans CH34 [TaxId: 266264]}
Length = 72
Score = 24.7 bits (54), Expect = 2.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
++ A+ VEG+S V+V+ +TFD T +A GY
Sbjct: 21 VKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66
>d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 24.1 bits (52), Expect = 4.1
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 43 VYDPEIPCDIFELGLIYKIDVENDYMV------KILMTLTAPGCPVAGDMPKWI 90
Y E DI + + V++ + ++ PG G M + I
Sbjct: 6 AYGGEFGPDIEFVAQYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERI 59
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type
ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 23.9 bits (52), Expect = 4.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE + + G++ V+ + +DP T +E GY
Sbjct: 24 IEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 23.7 bits (51), Expect = 5.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 6 PDTENNIADKI-ALSPESTIPPEDLERISNDIIAALKTV 43
K+ + I P+ + R+ +D I A + +
Sbjct: 36 SGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAI 74
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation
domain {Escherichia coli [TaxId: 562]}
Length = 121
Score = 23.6 bits (51), Expect = 6.3
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 24 IPPEDLERISNDIIAALK----TVYD 45
+P + L R+SN II + VYD
Sbjct: 84 LPYDFLGRVSNRIINEVNGISRVVYD 109
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 23.3 bits (50), Expect = 6.5
Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 22 STIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYKI------DVENDYMVKILMTL 75
S ++++ A+K+V + + I ++ +++ ++ +++
Sbjct: 18 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNI-QVVKKQGGAIDDTQLINKAVSI 76
Query: 76 TAPGCP--VAGDMPKWIENAVG 95
G V +M + I +++
Sbjct: 77 LVRGETEHVVDEMERSITDSLH 98
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId:
1354]}
Length = 68
Score = 23.2 bits (50), Expect = 7.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
IE AVG + G+ V+V + FD +A GY
Sbjct: 18 IEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis,
CopZ [TaxId: 1423]}
Length = 69
Score = 23.2 bits (50), Expect = 7.2
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 90 IENAVGAVEGISGVEVS-------ITFDPPWTPDLMSEEAQIATGY 128
+E +VG ++G+S V V+ ++FD +A GY
Sbjct: 20 VETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,412
Number of extensions: 24182
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 21
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.4 bits)