BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781063|ref|YP_003065476.1| hypothetical protein
CLIBASIA_04825 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781063|ref|YP_003065476.1| hypothetical protein CLIBASIA_04825 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 129

 Score =  260 bits (665), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MKQKNPDTENNIADKIALSPESTIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYK 60
           MKQKNPDTENNIADKIALSPESTIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYK
Sbjct: 1   MKQKNPDTENNIADKIALSPESTIPPEDLERISNDIIAALKTVYDPEIPCDIFELGLIYK 60

Query: 61  IDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSE 120
           IDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSE
Sbjct: 61  IDVENDYMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSE 120

Query: 121 EAQIATGYY 129
           EAQIATGYY
Sbjct: 121 EAQIATGYY 129


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score = 22.7 bits (47), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 67  YMVKILMTLTAPGCPVAGDMPKWIENAVGAVEGISGVEVSITFDPPWTPDLMSEEAQIAT 126
           Y V  L T+     PV G +      A+   +  SG++  IT D       +S+  Q+A 
Sbjct: 237 YNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITID-------ISKTTQLAG 289

Query: 127 GY 128
           G+
Sbjct: 290 GF 291


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 22.3 bits (46), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 17/22 (77%)

Query: 1   MKQKNPDTENNIADKIALSPES 22
           +++ N DT +N++D+I  +P++
Sbjct: 139 IEEVNTDTASNVSDQINQNPDT 160


>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 449

 Score = 21.2 bits (43), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 34  NDIIAALKTVYDPEIPCDIFELGLIYKIDVENDYMVKILMTLTAPGC 80
            ++I  +KT    EI    F + L+ K D   DY V+I       GC
Sbjct: 191 TEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGC 237


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 20.8 bits (42), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 12  IADKIALSPESTIPPEDLERISNDIIAALKTVYDPEIPCD 51
           +AD +  +P S +  +++E+   D++  L  + D  I  D
Sbjct: 568 LADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD 607


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.136    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,324
Number of Sequences: 1233
Number of extensions: 3104
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 129
length of database: 328,796
effective HSP length: 65
effective length of query: 64
effective length of database: 248,651
effective search space: 15913664
effective search space used: 15913664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 33 (17.3 bits)