HHsearch alignment of GI: 254781064 and MMDB domain: 2qgo_A_

>2qgo_A (A:) Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm}
Probab=99.83  E-value=3.8e-22  Score=144.92  Aligned_cols=107  Identities=15%  Similarity=0.224  Sum_probs=87.4

Q ss_pred             CCCC-EEECHHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCC-CCEEEEHHHHCCCCCCCCEECCC-CEEEEECHHH
Q ss_conf             9861-65268999999999971799-----861899998479878-71132001100210122201246-8399997877
Q gi|254781064|r    1 MSDI-VTMTEAAVYRIKEIVFNSQG-----KAQGIRISLKKGGCA-GLEYMVDLVTDNPVDGDDLIEKD-GVKVWIDSAS   72 (116)
Q Consensus         1 M~~m-i~IT~~A~~~i~~l~~~~~~-----~~~~lRi~v~~gGC~-G~~Y~l~~~~~~~~~~D~~~~~~-g~~i~id~~s   72 (116)
                      |+.| |+|||+|+++|++++.....     +...+|++++++||+ |++|.|.++++...+.|.+++.+ |++|+|++.+
T Consensus         1 m~~M~ItiT~~A~~~L~~~l~~~~~~~l~~~dg~~~~s~~G~gCs~g~~y~l~~v~~~~~~~d~~iesn~G~~i~v~~~s   80 (141)
T 2qgo_A            1 MSLLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFD   80 (141)
T ss_dssp             ---CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHH
T ss_pred             CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCEEEECCEEEEEEEECCCCCCCEEECCCCCCEEEECCCC
T ss_conf             90489998999999999842889549999847987122018766508998899983678986636037898536766642


Q ss_pred             HHHH-CCCEEEEECCCCCCEEEEECCCCC--------CCCCCCCCCCC
Q ss_conf             3200-698997631774451289888878--------76788521121
Q gi|254781064|r   73 LLYM-LGTEIDFKTEKLYSGFVFHNPNQV--------SACGCGQSVEI  111 (116)
Q Consensus        73 ~~~L-~g~~IDy~~~~~~~~F~~~NPna~--------~~CgCG~SF~~  111 (116)
                      ..|| .|++|||++.    +|+|+|||+.        ..||||+||.-
T Consensus        81 ~~fld~gl~iD~~~~----~f~l~npn~~l~~nv~i~~~~~~~~s~~~  124 (141)
T 2qgo_A           81 KTMLGPNMVMDYNAG----SLSLSSDEGLLDGSVDIGNGAALLKANKN  124 (141)
T ss_dssp             HTTSCSSEEEEEETT----EEEEEETTEEEEEEEEEEEHHHHHHHHHH
T ss_pred             HHHCCCCEEEECCCC----EEEECCCCCEECCCCEEEECHHHHHHHHC
T ss_conf             422178818825889----78874865342598279773543336642