RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str. psy62] (116 letters) >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118 Score = 119 bits (300), Expect = 1e-28 Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE 60 MS +T++++A R+ + ++GK G+R+ ++ GC+G+ Y+++ V + P D + E Sbjct: 1 MS--ITLSDSAAARVNTFL-ANRGKGFGLRLGVRTSGCSGMAYVLEFVDE-PTPEDIVFE 56 Query: 61 KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 GVKV +D SL ++ GT++DF E L GF F NPN CGCG+S ++ A Sbjct: 57 DKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAA 110 >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124 Score = 112 bits (280), Expect = 3e-26 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 1/109 (0%) Query: 4 IVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDG 63 I +T+ AV IK++ + + +RI + GGC+G +Y + D +GD + E DG Sbjct: 9 IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFD-DTVEEGDHVFEYDG 67 Query: 64 VKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIK 112 VKV ID S+ Y+ G E+D+ + + GF NPN +CGCG S Sbjct: 68 VKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSCG 116 >2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145 Score = 108 bits (272), Expect = 2e-25 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%) Query: 5 VTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGV 64 +T+T AA I+E+V Q G+R+ +K+ GCAG Y++D V++ D D L E DG Sbjct: 41 LTLTPAAAIHIRELV-AKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKD-DLLFEHDGA 98 Query: 65 KVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 K+++ ++ ++ GTE+DF E L F FHNP + CGCG+S + Sbjct: 99 KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145 >1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112 Score = 106 bits (265), Expect = 1e-24 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 4 IVTMTEAAVYRIKEIVFNS--QGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEK 61 +V +T AA+ ++ + + +G+A +RI ++ C Y + LV + D L + Sbjct: 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPK-PTDLLTQS 59 Query: 62 DGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRA 114 G + I + + + G +D+ + + F FHNPN CGCG + + R+ Sbjct: 60 QGWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112 >2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114 Score = 100 bits (250), Expect = 8e-23 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE 60 M+ +T T+AA ++K ++ + +R+ + GGC+G +Y + DGD IE Sbjct: 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFD-EKVNDGDLTIE 63 Query: 61 KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEI 111 K GV++ ID SL Y++G +D+ S F +NPN S CGCG S I Sbjct: 64 KSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 >2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125 Score = 85.9 bits (212), Expect = 2e-18 Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 4 IVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDG 63 + +T AA ++ + + +R++ + ++Y + D+ + D + +G Sbjct: 22 MFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF--DDLTEDDIRLTSEG 79 Query: 64 VKVWIDSASLLYMLGTEIDFK-TEKLYSGFVFHNPN 98 V++ I + + T +D+ E F+F NP Sbjct: 80 VEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPR 115 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 33.8 bits (77), Expect = 0.008 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 46/111 (41%) Query: 9 EAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLV----TDNP-VDGDDLIEKDG 63 A + I F QG +Y +L T + V DLI+ Sbjct: 153 NAQLVAI----FGGQGNTD--------------DYFEELRDLYQTYHVLV--GDLIKF-- 190 Query: 64 VKVWIDSASLLYMLGTEIDFKTEKLYS-GF-V---FHNPNQ-------VSA 102 SA L L EK+++ G + NP+ +S Sbjct: 191 ------SAETLSELIRTTL-DAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234 Score = 28.4 bits (63), Expect = 0.37 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 13/53 (24%) Query: 44 MVDLVTDNPVD-----GDDLIEKDGVKVWIDSASLLYMLGTEID--FKTEKLY 89 ++D+V +NPV+ G EK G ++ + +++++ T +D KTEK++ Sbjct: 1661 ILDIVINNPVNLTIHFGG---EK-GKRIRENYSAMIFE--TIVDGKLKTEKIF 1707 Score = 26.4 bits (58), Expect = 1.4 Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 57/126 (45%) Query: 9 EAAVYRIKEIVFNSQGKAQGIRIS----------------LKKGGCAGLEYMVDLVTDNP 52 A I + + + + L+ + E +VD + P Sbjct: 433 VPASDLINKDL-----VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487 Query: 53 VD------------------GD----DLIE--KDG--VKVWIDSASLLYMLGTEIDFKTE 86 V G L KDG V+V I + +D + Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV-I--------VAGTLDINPD 538 Query: 87 KLYSGF 92 Y GF Sbjct: 539 DDY-GF 543 >2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 2bs8_A* 2bs7_1* Length = 177 Score = 27.8 bits (61), Expect = 0.60 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 33 LKKGGCAGLEYMVDLVTDNPVDGDD---LIEKDGVKVWIDSASLLYMLGTEIDFKT-EKL 88 + KG C GL+ VDL +DG L E+ G+ +W+ Y GT + + E + Sbjct: 48 ISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTK--YSRGTAMSGNSWENV 105 Query: 89 YSGF 92 +SG+ Sbjct: 106 FSGW 109 >3eb8_A Cysteine protease-like VIRA; beta sheet, alpha helix, hydrolase, plasmid, secreted, thiol protease, virulence; 2.40A {Shigella flexneri} Length = 358 Score = 27.0 bits (59), Expect = 1.1 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 14/60 (23%) Query: 57 DLIEKDGVKVWIDSASLLYMLG--------------TEIDFKTEKLYSGFVFHNPNQVSA 102 DLI + G+ +IDS L ML ++ F+TEKL +F +P +SA Sbjct: 172 DLINELGINEFIDSKKELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISA 231 >1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* Length = 219 Score = 26.0 bits (56), Expect = 2.0 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 22/76 (28%) Query: 20 FNSQGKAQGIRISLKKGGCAGLEY---MVDLVTDNPVDGDD----------------LIE 60 ++ +G A IR+ L+ Y D D + Sbjct: 7 WDIRGLAHAIRLLLE---YTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLI 63 Query: 61 KDGVKVWIDSASLLYM 76 VK+ +A L Y+ Sbjct: 64 DGDVKLTQSNAILRYI 79 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 25.9 bits (56), Expect = 2.1 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%) Query: 31 ISLKKGGCAGLEYM--VDLVTDNPVDGDD--------LIEKDGVKV 66 IS G G Y VD T PVD D ++E G+++ Sbjct: 861 ISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRL 906 >2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484 Score = 25.8 bits (55), Expect = 2.2 Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 6/62 (9%) Query: 18 IVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNP--VDGDDLIE----KDGVKVWIDSA 71 ++ N ++L G +++ T VD I +V + ++ Sbjct: 408 VLSNKGSSGSSYTLTLSGSGYTSGTKLIEAYTCTSVTVDSSGDIPVPMASGLPRVLLPAS 467 Query: 72 SL 73 + Sbjct: 468 VV 469 >1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A* Length = 211 Score = 26.0 bits (56), Expect = 2.2 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%) Query: 15 IKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDD 57 IK I FN +G+A+ IR++L AG+ Y D + D Sbjct: 6 IKVIYFNGRGRAESIRMTLV---AAGVNY-----EDERISFQD 40 >2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: CGL GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A* Length = 211 Score = 25.9 bits (56), Expect = 2.5 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 8/38 (21%) Query: 20 FNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDD 57 F +G+A+ IR+ L CAG+++ D D Sbjct: 11 FQFRGRAEPIRLLLT---CAGVKF-----EDYQFTMDQ 40 >1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* Length = 234 Score = 25.5 bits (55), Expect = 2.8 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%) Query: 20 FNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKD 62 + +G Q R+ L+ +Y + +GD K Sbjct: 7 WKIKGLVQPTRLLLEY---LEEKY--EEHLYERDEGDKWRNKK 44 >2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} Length = 204 Score = 25.3 bits (55), Expect = 3.6 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 8/38 (21%) Query: 20 FNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDD 57 FN +G A+ IR AG +Y D + ++ Sbjct: 9 FNGRGAAEIIRQVFV---LAGQDY-----EDVRLTHEE 38 >3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579} Length = 414 Score = 24.8 bits (54), Expect = 4.4 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Query: 1 MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRI 31 MS I+ A Y I + N + KA+ I + Sbjct: 1 MSGII-----ATYLIHDDSHNLEKKAEQIAL 26 >1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637 Score = 24.9 bits (53), Expect = 4.9 Identities = 4/40 (10%), Positives = 15/40 (37%) Query: 18 IVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDD 57 +V N+ + + + + + + D +T + + Sbjct: 581 VVLNNDSVSHTVNVPVWQLSMPNGSTVTDKITGHSYTVQN 620 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* Length = 323 Score = 24.6 bits (53), Expect = 5.0 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%) Query: 7 MTEAAVYRIKEIVFNSQGKAQGIR-ISL 33 +TE + +IK F S G A + +SL Sbjct: 290 ITEMLIPKIK--AFGSAGHAGDYKVVSL 315 >3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} Length = 218 Score = 24.6 bits (53), Expect = 5.5 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%) Query: 20 FNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKD 62 + +G AQ IR+ L+ G Y + + DG+ Sbjct: 8 WKIRGLAQPIRLLLE---YVGDSY--EEHSYGRCDGEKWQNDK 45 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Length = 314 Score = 24.3 bits (52), Expect = 6.0 Identities = 4/23 (17%), Positives = 11/23 (47%) Query: 9 EAAVYRIKEIVFNSQGKAQGIRI 31 E V R++ ++ + + Q + Sbjct: 15 ETLVRRMERVIASGKTPFQDYFL 37 >1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198 Score = 24.6 bits (52), Expect = 6.3 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 6 TMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIEKDGVK 65 +T +++ + F G Q ++I K A ++ + + + G Sbjct: 15 RVTPQSLFIL----FGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 Query: 66 VWID 69 + I Sbjct: 71 IRIT 74 >2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102 Score = 24.1 bits (52), Expect = 8.2 Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 8 TEAAVYRIKEIVFNSQGKAQGIRISLKKG 36 T+ R I ++ +A+ + L KG Sbjct: 1 TQPQRTRYSIIQTKTEDEAKAVLDELNKG 29 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.398 Gapped Lambda K H 0.267 0.0521 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,022,731 Number of extensions: 42915 Number of successful extensions: 151 Number of sequences better than 10.0: 1 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 28 Length of query: 116 Length of database: 5,693,230 Length adjustment: 79 Effective length of query: 37 Effective length of database: 3,777,954 Effective search space: 139784298 Effective search space used: 139784298 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.5 bits)