BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA
[Candidatus Liberibacter asiaticus str. psy62]
         (116 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781064|ref|YP_003065477.1| FeS assembly scaffold SufA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 116

 Score =  239 bits (610), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE 60
           MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE
Sbjct: 1   MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE 60

Query: 61  KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRADL 116
           KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRADL
Sbjct: 61  KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEIKRADL 116


>gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 109

 Score = 84.0 bits (206), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 1   MSDIVTMTEAAVYRIKEIVFNSQGKAQGIRISLKKGGCAGLEYMVDLVTDNPVDGDDLIE 60
           M  I+ +T+AA  +IK I+  S    + +RI+++ GGC+G  Y  DL +    D D + E
Sbjct: 1   MVPIIKITDAAATQIKTIL-ESNSDKKALRITIEGGGCSGFSYKFDLESKQSED-DIVFE 58

Query: 61  KDGVKVWIDSASLLYMLGTEIDFKTEKLYSGFVFHNPNQVSACGCGQSVEI 111
           K+G +++ID  SL Y+  +EIDF    L   F   NPN  S CGCG S  I
Sbjct: 59  KNGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 58  LIEKDGVKVWIDSASLLYMLGTEIDFK 84
           L++++ +KVW + A  L +L  ++D +
Sbjct: 377 LVQRNAMKVWKNGAIFLDVLLADVDIR 403


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score = 23.1 bits (48), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 4/36 (11%)

Query: 54  DGDDLIEKDGVK---VWIDSASLLYMLGTEIDFKTE 86
           + DD++EK+G+K   + +++A L+ +L  EI+ K E
Sbjct: 279 ETDDIVEKEGIKRTFLEVENADLILLL-KEINSKKE 313


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 22.3 bits (46), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 9   EAAVYRIKEIVFNSQGKAQGIRIS 32
           E  V RI+ IV  S+G AQ + ++
Sbjct: 106 EELVARIRAIVRRSRGHAQSLIVT 129


>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 682

 Score = 21.9 bits (45), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 51 NPVDGDDLIEKDGVKVWIDSAS 72
          N VDGDDL +++G +  +D AS
Sbjct: 76 NVVDGDDLEDEEGSEDSLDLAS 97


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,089
Number of Sequences: 1233
Number of extensions: 2775
Number of successful extensions: 8
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 328,796
effective HSP length: 63
effective length of query: 53
effective length of database: 251,117
effective search space: 13309201
effective search space used: 13309201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)