HHsearch alignment for GI: 254781065 and conserved domain: COG0320
>COG0320 LipA Lipoate synthase [Coenzyme metabolism].
Probab=92.33 E-value=1.2 Score=25.78 Aligned_cols=184 Identities=18% Similarity=0.314 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCCCCEEEC-CCEEEEEE-CCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 3731000007688714520-75379997-274300000112233012555567898999999999972997479997269
Q gi|254781065|r 75 EDPIGDNNHSPLKGIVHRY-PDRILLKL-LHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGG 152 (352)
Q Consensus 75 ~DPl~E~~~~p~pgl~hkY-~~rvLl~~-t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGG 152 (352)
T Consensus 50 L~TVCEEA~CP--Ni~ECw~~~tATFmImG~~CTR~C~FC~V~~--g~--P~~lD~~EP~rvAeaV~~m-gLkyVViTsV 122 (306)
T COG0320 50 LHTVCEEASCP--NIGECWSRGTATFMILGDICTRRCRFCDVKT--GR--PNPLDPDEPERVAEAVKDM-GLKYVVITSV 122 (306)
T ss_pred CCEECCCCCCC--CHHHHHCCCCEEEEECCCHHCCCCCCCCCCC--CC--CCCCCCCHHHHHHHHHHHH-CCCEEEEEEE
T ss_conf 85252567899--7688716783377641513226788531478--99--9999974278999999983-8986999753
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHH-HCCHHHHHHHHHCCCCEEEEECCCCHHH----CCH------
Q ss_conf 81324989999999998619981289874343563434-3399999998625993899933699588----699------
Q gi|254781065|r 153 DPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQ-RINPELIQCLKEAGKPVYIAIHANHPYE----FSE------ 221 (352)
Q Consensus 153 DPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~-Rit~~L~~~l~~~~~~~~iv~H~NHp~E----lt~------ 221 (352)
T Consensus 123 dRDDL~DGGA~hfa~~i~~Ir~~~---P~t~iEvL~PDF~G~~~al~~v~~~~-pdV----~nHNvETVprL~~~VRp~A 194 (306)
T COG0320 123 DRDDLPDGGAQHFAECIRAIRELN---PQTTIEVLTPDFRGNDDALEIVADAG-PDV----FNHNVETVPRLYPRVRPGA 194 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCHHHHHHHHHCC-CCH----HHCCCCCCHHCCCCCCCCC
T ss_conf 156665645689999999999639---99648983865467899999998369-611----0045200001142568987
Q ss_pred ---HHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf ---9999999999879898232798623457889999999999986982423011
Q gi|254781065|r 222 ---EAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHH 273 (352)
Q Consensus 222 ---~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~ 273 (352)
T Consensus 195 ~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQ 249 (306)
T COG0320 195 TYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQ 249 (306)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6888999999999858986311213550577689999999999985998997300