HHsearch alignment for GI: 254781065 and conserved domain: COG0535

Probab=98.85  E-value=1.2e-06  Score=68.10  Aligned_cols=174  Identities=23%  Similarity=0.328  Sum_probs=114.2

Q ss_pred             CCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             07537999727430000011223301255556789899999999997299747999726981324989999999998619
Q gi|254781065|r   93 YPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus        93 Y~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i  172 (352)
T Consensus        17 ~p~~~~~~~t~~Cnl~C~~C~~~~~~~--~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~~--~~ei~~~~~~~   92 (347)
T COG0535          17 PPLVVGIELTNRCNLACKHCYAEAGKK--LPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPD--LLEIVEYARKK   92 (347)
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCC--HHHHHHHHHHC
T ss_conf             773799855887687499877242677--67735687878999999871884499807987333457--99999998513


Q ss_pred             CCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCC--CHHH---C------CHHHHHHHHHHHHCCCEEEECH
Q ss_conf             981289874343563434339999999862599389993369--9588---6------9999999999998798982327
Q gi|254781065|r  173 KHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHAN--HPYE---F------SEEAIAAISRLANAGIILLSQS  241 (352)
Q Consensus       173 ~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~N--Hp~E---l------t~~~~~A~~~L~~~Gv~v~nQs  241 (352)
T Consensus        93 -~~~~~~~~TnG-----~~~~~~~~~~l~~~g~~-~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~  165 (347)
T COG0535          93 -GGIRVSLSTNG-----TLLTEEVLEKLKEAGLD-YVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINT  165 (347)
T ss_pred             -CCEEEEEECCC-----CCCCHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             -87289882687-----54538899988766887-699997458853214002776269999999999987397048999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             986234578899999999999869824230113457652
Q gi|254781065|r  242 VLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGT  280 (352)
Q Consensus       242 VLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~  280 (352)
T Consensus       166 ~v~~~n~~---~l~~~~~~~~~~g~~~~~~~~~~~~g~~  201 (347)
T COG0535         166 TVTKINYD---ELPEIADLAAELGVDELNVFPLIPVGRG  201 (347)
T ss_pred             EEECCCHH---HHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf             99566346---5899999998659760576764431434