HHsearch alignment for GI: 254781065 and conserved domain: COG1060

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only].
Probab=97.08  E-value=0.0034  Score=43.65  Aligned_cols=213  Identities=19%  Similarity=0.227  Sum_probs=119.8

Q ss_pred             CCCCEEECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHH
Q ss_conf             88714520753799972743000001122330125555678989999999999729974799972698132498999999
Q gi|254781065|r   86 LKGIVHRYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKV  165 (352)
Q Consensus        86 ~pgl~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~l  165 (352)
T Consensus        50 ~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~-G~~Evli~gG~~p~~~~~y~~~~  128 (370)
T COG1060          50 RVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKR-GITEVLIVGGEHPELSLEYYEEL  128 (370)
T ss_pred             CCCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHHHH
T ss_conf             36885799975257853233179972623457888655316999999999999875-98699980576877436799999


Q ss_pred             HHHHHC-CCCCEEEEEECCE--EEEEHHHC-CHHHHHHHHHCCCCE-------EEE-----ECCCCHHHCCHHHHHHHHH
Q ss_conf             999861-9981289874343--56343433-999999986259938-------999-----3369958869999999999
Q gi|254781065|r  166 LKTLRY-IKHVQILRFHSRV--PIVDPQRI-NPELIQCLKEAGKPV-------YIA-----IHANHPYEFSEEAIAAISR  229 (352)
Q Consensus       166 l~~L~~-i~hv~~IRi~TR~--pv~~P~Ri-t~~L~~~l~~~~~~~-------~iv-----~H~NHp~Elt~~~~~A~~~  229 (352)
T Consensus       129 ~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~-p~K~~~~~wle~~~~  207 (370)
T COG1060         129 FRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC-PPKKSPEEWLEIHER  207 (370)
T ss_pred             HHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHC-CCCCCHHHHHHHHHH
T ss_conf             9999885730343016788867987436888999999999769876747541141677998637-988999999999999


Q ss_pred             HHHCCCEEEECHHHHHCCCCCHHHHHHHHH---HHHHCCCEEEEEEC---CCCCCCC----CCCCCCHHHHHHHHHHHHH
Q ss_conf             998798982327986234578899999999---99986982423011---3457652----1011869999999999998
Q gi|254781065|r  230 LANAGIILLSQSVLLKGINDDPEILANLMR---TFVELRIKPYYLHH---PDLAAGT----SHFRLTIEEGQKIVASLKE  299 (352)
Q Consensus       230 L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~---~L~~~gV~PYYl~~---~d~v~G~----~hf~v~~~~~~~i~~~l~~  299 (352)
T Consensus       208 Ah~lGI~~ta-tml~Gh~E~~ed~~~hl~~ir~lQ~~~gg--~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi  284 (370)
T COG1060         208 AHRLGIPTTA-TMLLGHVETREDRIDHLEHIRDLQDETGG--FQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARI  284 (370)
T ss_pred             HHHCCCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9976998420-34787328889999999999999998589--57998055457888766667898998999999999999


Q ss_pred             HCCC
Q ss_conf             2888
Q gi|254781065|r  300 KISG  303 (352)
Q Consensus       300 ~lsG  303 (352)
T Consensus       285 ~l~~  288 (370)
T COG1060         285 FLDN  288 (370)
T ss_pred             HCCC
T ss_conf             7067