HHsearch alignment for GI: 254781065 and conserved domain: COG1533

>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair].
Probab=97.87  E-value=0.00075  Score=48.27  Aligned_cols=172  Identities=20%  Similarity=0.244  Sum_probs=109.4

Q ss_pred             EEECCCCCCHHHCCCCCCEECCCCCC---CCCHH-HHHHHHHHHHH-CCCEEEEEEEC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf             99727430000011223301255556---78989-99999999972-99747999726-981324989999999998619
Q gi|254781065|r   99 LKLLHVCPVYCRFCFRREMVGSQKGT---VLSSK-DTEAALAYIQE-KSQIWEVIFTG-GDPLILSHKRLQKVLKTLRYI  172 (352)
Q Consensus        99 l~~t~~C~~~CryCfR~~~~~~~~~~---~~~~~-~~~~~~~Yi~~-~~eI~eVilSG-GDPl~l~~~~L~~ll~~L~~i  172 (352)
T Consensus        33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyq-p~E~~~~ltR~ilei  111 (297)
T COG1533          33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQ-PIEKEYRLTRKILEI  111 (297)
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHH
T ss_conf             3774787788841336201466567860554015699999988752467855999854688885-647787899999999


Q ss_pred             --CCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC--EEEEECCCCHHH-C---------C-HHHHHHHHHHHHCCCE-
Q ss_conf             --9812898743435634343399999998625993--899933699588-6---------9-9999999999987989-
Q gi|254781065|r  173 --KHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP--VYIAIHANHPYE-F---------S-EEAIAAISRLANAGII-  236 (352)
Q Consensus       173 --~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~--~~iv~H~NHp~E-l---------t-~~~~~A~~~L~~~Gv~-  236 (352)
T Consensus       112 ~~~~~~~v~I~TKS~lv~------RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~  185 (297)
T COG1533         112 LLKYGFPVSIVTKSALVL------RDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPV  185 (297)
T ss_pred             HHHCCCCEEEEECCCCHH------CCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             885399679997774101------02789984011265189999516848889865899969899999999999879848


Q ss_pred             EEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             8232798623457889999999999986982423011345765
Q gi|254781065|r  237 LLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAG  279 (352)
Q Consensus       237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G  279 (352)
T Consensus       186 ~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~~v~~~~l~~~~~  226 (297)
T COG1533         186 GLFVAPIIPGLND--EELERILEAAAEAGARVVVYGTLRLRLD  226 (297)
T ss_pred             EEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCHH
T ss_conf             9998553078875--8899999999975774136313304577