HHsearch alignment for GI: 254781065 and conserved domain: COG1533
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair].
Probab=97.87 E-value=0.00075 Score=48.27 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=109.4
Q ss_pred EEECCCCCCHHHCCCCCCEECCCCCC---CCCHH-HHHHHHHHHHH-CCCEEEEEEEC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99727430000011223301255556---78989-99999999972-99747999726-981324989999999998619
Q gi|254781065|r 99 LKLLHVCPVYCRFCFRREMVGSQKGT---VLSSK-DTEAALAYIQE-KSQIWEVIFTG-GDPLILSHKRLQKVLKTLRYI 172 (352)
Q Consensus 99 l~~t~~C~~~CryCfR~~~~~~~~~~---~~~~~-~~~~~~~Yi~~-~~eI~eVilSG-GDPl~l~~~~L~~ll~~L~~i 172 (352)
T Consensus 33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyq-p~E~~~~ltR~ilei 111 (297)
T COG1533 33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQ-PIEKEYRLTRKILEI 111 (297)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 3774787788841336201466567860554015699999988752467855999854688885-647787899999999
Q ss_pred --CCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCC--EEEEECCCCHHH-C---------C-HHHHHHHHHHHHCCCE-
Q ss_conf --9812898743435634343399999998625993--899933699588-6---------9-9999999999987989-
Q gi|254781065|r 173 --KHVQILRFHSRVPIVDPQRINPELIQCLKEAGKP--VYIAIHANHPYE-F---------S-EEAIAAISRLANAGII- 236 (352)
Q Consensus 173 --~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~--~~iv~H~NHp~E-l---------t-~~~~~A~~~L~~~Gv~- 236 (352)
T Consensus 112 ~~~~~~~v~I~TKS~lv~------RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~ 185 (297)
T COG1533 112 LLKYGFPVSIVTKSALVL------RDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPV 185 (297)
T ss_pred HHHCCCCEEEEECCCCHH------CCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 885399679997774101------02789984011265189999516848889865899969899999999999879848
Q ss_pred EEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 8232798623457889999999999986982423011345765
Q gi|254781065|r 237 LLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAG 279 (352)
Q Consensus 237 v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G 279 (352)
T Consensus 186 ~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 186 GLFVAPIIPGLND--EELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred EEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCHH
T ss_conf 9998553078875--8899999999975774136313304577