HHsearch alignment for GI: 254781065 and conserved domain: TIGR00238
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=100.00 E-value=0 Score=453.88 Aligned_cols=312 Identities=36% Similarity=0.629 Sum_probs=295.8
Q ss_pred CCCCCCCCCHHHHHHH--------CCCC-HHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC---CCCCHHHCCCCHHHCCC
Q ss_conf 3355224998899864--------1999-8999999999853484389889953589974---45011232699778013
Q gi|254781065|r 2 QLRHKTLTSAQDLYNA--------NLIK-KEQIDEIKEISNHYSIALTPVIANLINPHNP---NDPIARQFIPQKEELNI 69 (352)
Q Consensus 2 Qlr~~~i~s~~~L~~~--------l~Ls-~e~~~~~~~~~~~fp~~vtpyyl~LId~~dp---~DPi~rQvlP~~~El~~ 69 (352)
T Consensus 20 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~ 98 (357)
T TIGR00238 20 QLKN-VLRDPDGLKKLRELREVTNLNLPDEDEEEGGRAAKKLFPLGLPPYYLDLLDKGNPYVEDDPLRRQVLPPDEEFVE 98 (357)
T ss_pred HHHH-HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 8887-631657888888876764167760356776665541111246446675404678630122345542253256664
Q ss_pred CCCC-------CCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHCCCC----CCEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 8133-------53731000007688714520753799972743000001122----330125555678989999999999
Q gi|254781065|r 70 LPEE-------REDPIGDNNHSPLKGIVHRYPDRILLKLLHVCPVYCRFCFR----REMVGSQKGTVLSSKDTEAALAYI 138 (352)
Q Consensus 70 ~~~~-------~~DPl~E~~~~p~pgl~hkY~~rvLl~~t~~C~~~CryCfR----~~~~~~~~~~~~~~~~~~~~~~Yi 138 (352)
T Consensus 99 ~~~~~~~d~~~~~d~~~~~~~~~~p~~~~~y~~~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g-~p~~~~~~~~~~~ 177 (357)
T TIGR00238 99 APGFHKEDRNISTDPLEEDDDSPVPGLTHRYPNRALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPG-NPKKKWEAALDYI 177 (357)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCEEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCC-CCHHHHHHHHHHH
T ss_conf 201110112100032232334321024442100134664166402233333200110045100367-7367899999987
Q ss_pred HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 72997479997269813249899999999986199812898743435634343399999998625993899933699588
Q gi|254781065|r 139 QEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE 218 (352)
Q Consensus 139 ~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E 218 (352)
T Consensus 178 ~~~~~~~~~~~~ggdp~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (357)
T TIGR00238 178 AEHPELEEVLFSGGDPLLLKDHELEWLLKELESIPHLEGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHINHCNE 257 (357)
T ss_pred HHCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCCCCHH
T ss_conf 40410233201078763100578999999875334010022023220110046689999987533221100000243011
Q ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999999998798982327986234578899999999999869824230113457652101186999999999999
Q gi|254781065|r 219 FSEEAIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQKIVASLK 298 (352)
Q Consensus 219 lt~~~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~~i~~~l~ 298 (352)
T Consensus 258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~pyy~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 337 (357)
T TIGR00238 258 ITEEFAEAVEKLRTVGVTLLNQSVLLRGVNDSAPILAKLSDALFKVGVLPYYLHLLDGVEGAGHFLVPDAEALQIVKELA 337 (357)
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03789999998875265000013221110111578999888787630102322220001101122201678899998887
Q ss_pred HHCCC---CCCCEEEEECCC
Q ss_conf 82888---654106631788
Q gi|254781065|r 299 EKISG---LCQPFYILDLPG 315 (352)
Q Consensus 299 ~~lsG---~~~P~~v~d~p~ 315 (352)
T Consensus 338 ~~~~g~~~~~~p~~~~~~~g 357 (357)
T TIGR00238 338 GLTSGSFRYLVPKFAVEIPG 357 (357)
T ss_pred HHCCCCHHHHHHHHHHCCCC
T ss_conf 51353023331122202579