HHsearch alignment for GI: 254781065 and conserved domain: TIGR01290
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=97.73 E-value=0.00034 Score=50.71 Aligned_cols=170 Identities=25% Similarity=0.427 Sum_probs=115.6
Q ss_pred EEECCCEEEEEECCCCCCHHHCCCCCCEECCC-----CCCCCCHHHHHHHHHHHH-HCCCEEEEEEEC-CCCCCCCHHHH
Q ss_conf 45207537999727430000011223301255-----556789899999999997-299747999726-98132498999
Q gi|254781065|r 90 VHRYPDRILLKLLHVCPVYCRFCFRREMVGSQ-----KGTVLSSKDTEAALAYIQ-EKSQIWEVIFTG-GDPLILSHKRL 162 (352)
Q Consensus 90 ~hkY~~rvLl~~t~~C~~~CryCfR~~~~~~~-----~~~~~~~~~~~~~~~Yi~-~~~eI~eVilSG-GDPl~l~~~~L 162 (352)
T Consensus 19 AH~yFARMH~AVApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~i~QLSVvGIAGPGDpLan~~~T- 97 (461)
T TIGR01290 19 AHRYFARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAEIPQLSVVGIAGPGDPLANIKKT- 97 (461)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-
T ss_conf 4534311134214433455455686416678888762013468489999999998506753156325788624575000-
Q ss_pred HHHHHHH-HCCCCCEEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHHCCHH-------------------
Q ss_conf 9999998-61998128987434356343433999999986259938999336995886999-------------------
Q gi|254781065|r 163 QKVLKTL-RYIKHVQILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYEFSEE------------------- 222 (352)
Q Consensus 163 ~~ll~~L-~~i~hv~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~Elt~~------------------- 222 (352)
T Consensus 98 f~Tl~~v~~~~PDvklC-LSTNGL-~LP~~v-DrlvdlgvdH-VTiTiN~-------iDP~vG~~IYpWv~y~G~RY~Gr 166 (461)
T TIGR01290 98 FQTLELVAREVPDVKLC-LSTNGL-ALPEHV-DRLVDLGVDH-VTITINA-------IDPEVGEKIYPWVAYEGKRYTGR 166 (461)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCC-CCHHHH-HHHHHCCCCC-EEEEECC-------CCHHHHCEECCCEEECCCCCCHH
T ss_conf 89999998517821420-012656-313465-2464238881-7988314-------06355103065233267333548
Q ss_pred ---------HHHHHHHHHHCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf ---------999999999879898232798623457889999999999986982423011345
Q gi|254781065|r 223 ---------AIAAISRLANAGIILLSQSVLLKGINDDPEILANLMRTFVELRIKPYYLHHPDL 276 (352)
Q Consensus 223 ---------~~~A~~~L~~~Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~gV~PYYl~~~d~ 276 (352)
T Consensus 167 ~Aa~lL~erQl~G~~~L~ergiL~KvNSvlIPGiND~--HL~eVsk~vk~~GA---fLHNvmP 224 (461)
T TIGR01290 167 EAAKLLIERQLEGLEKLTERGILVKVNSVLIPGINDE--HLVEVSKKVKELGA---FLHNVMP 224 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCCCCH--HHHHHHHHHHCCCC---HHCCCCC
T ss_conf 9999989999999999973885488800643898817--89998777510464---0005442