HHsearch alignment for GI: 254781065 and conserved domain: TIGR03471
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.55 E-value=7.6e-06 Score=62.39 Aligned_cols=184 Identities=18% Similarity=0.261 Sum_probs=127.5
Q ss_pred EEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 799972743000001122330125555678989999999999729-9747999726981324989999999998619981
Q gi|254781065|r 97 ILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEK-SQIWEVIFTGGDPLILSHKRLQKVLKTLRYIKHV 175 (352)
Q Consensus 97 vLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~-~eI~eVilSGGDPl~l~~~~L~~ll~~L~~i~hv 175 (352)
T Consensus 198 ~~i~TSRGCP~~C~FC~~p~~~~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~-DD~Ft~~~~r~~eic~~i~~l~-i 275 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFPEVREFFFD-DDTFTDDKPRAEEIARKLGPLG-V 275 (472)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHCC-C
T ss_conf 4764179988779687882102688662159999999999999866897589994-7766789999999999998769-8
Q ss_pred EEEEEECCEEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCHHH--C-------C-HHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 2898743435634343399999998625993899933699588--6-------9-9999999999987989823279862
Q gi|254781065|r 176 QILRFHSRVPIVDPQRINPELIQCLKEAGKPVYIAIHANHPYE--F-------S-EEAIAAISRLANAGIILLSQSVLLK 245 (352)
Q Consensus 176 ~~IRi~TR~pv~~P~Rit~~L~~~l~~~~~~~~iv~H~NHp~E--l-------t-~~~~~A~~~L~~~Gv~v~nQsVLLk 245 (352)
T Consensus 276 ~-W~~~~Rv------~~d~E~l~~mk~AGc-~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIi-G 346 (472)
T TIGR03471 276 T-WSCNARA------NVDYETLKVMKENGL-RLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFIL-G 346 (472)
T ss_pred E-EEEEEEC------CCCHHHHHHHHHHCC-EEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEE-C
T ss_conf 2-7876303------489999999998398-48998037589999998538998999999999887579879999987-7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 3457889999999999986982423011345765210118699999
Q gi|254781065|r 246 GINDDPEILANLMRTFVELRIKPYYLHHPDLAAGTSHFRLTIEEGQ 291 (352)
Q Consensus 246 gVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hf~v~~~~~~ 291 (352)
T Consensus 347 ~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~ 392 (472)
T TIGR03471 347 LPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999889999999999975989089987258899699999998398