HHsearch alignment for GI: 254781065 and conserved domain: TIGR03551

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.58  E-value=0.00094  Score=47.60  Aligned_cols=207  Identities=21%  Similarity=0.228  Sum_probs=120.1

Q ss_pred             ECCCEEEEEECCCCCCHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf             20753799972743000001122330125555678989999999999729974799972698132498999999999861
Q gi|254781065|r   92 RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYIQEKSQIWEVIFTGGDPLILSHKRLQKVLKTLRY  171 (352)
Q Consensus        92 kY~~rvLl~~t~~C~~~CryCfR~~~~~~~~~~~~~~~~~~~~~~Yi~~~~eI~eVilSGGDPl~l~~~~L~~ll~~L~~  171 (352)
T Consensus        36 tf~~n~~In~TNiC~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~-~G~~Ei~~~gG~~Pel~~~~y~e~~r~ik~  114 (343)
T TIGR03551        36 TYVVNRNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK-AGATEVCIQGGIHPDLDGDFYLDILRAVKE  114 (343)
T ss_pred             EEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             9965006255268747897677866899986600799999999999997-699689982586878888899999999987


Q ss_pred             -CCCCEEEEEECCEEEEEH--HH----CCHHHHHHHHHCCCCEE----------EEECCCCHHHCCHHH-HHHHHHHHHC
Q ss_conf             -998128987434356343--43----39999999862599389----------993369958869999-9999999987
Q gi|254781065|r  172 -IKHVQILRFHSRVPIVDP--QR----INPELIQCLKEAGKPVY----------IAIHANHPYEFSEEA-IAAISRLANA  233 (352)
Q Consensus       172 -i~hv~~IRi~TR~pv~~P--~R----it~~L~~~l~~~~~~~~----------iv~H~NHp~Elt~~~-~~A~~~L~~~  233 (352)
T Consensus       115 ~~p~~---~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~l  191 (343)
T TIGR03551       115 EVPGM---HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL  191 (343)
T ss_pred             HCCCC---EEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             48830---102278999999998659999999999997587767886513214012414696989999999999999985


Q ss_pred             CCEEEECHHHHHCCCCCHHHHHHHHHHHHHC-----CCEEE--EEECCCCCC----CCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9898232798623457889999999999986-----98242--301134576----521011869999999999998288
Q gi|254781065|r  234 GIILLSQSVLLKGINDDPEILANLMRTFVEL-----RIKPY--YLHHPDLAA----GTSHFRLTIEEGQKIVASLKEKIS  302 (352)
Q Consensus       234 Gv~v~nQsVLLkgVND~~~~l~~L~~~L~~~-----gV~PY--Yl~~~d~v~----G~~hf~v~~~~~~~i~~~l~~~ls  302 (352)
T Consensus       192 Gi~t--tatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~~~~~~~e~l~~iAvaRl~l~  269 (343)
T TIGR03551       192 GIPT--TATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLH  269 (343)
T ss_pred             CCCC--CCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9972--02234278899999999999999862013882699813656678804441566789857999999999999704


Q ss_pred             CC
Q ss_conf             86
Q gi|254781065|r  303 GL  304 (352)
Q Consensus       303 G~  304 (352)
T Consensus       270 ~~  271 (343)
T TIGR03551       270 GL  271 (343)
T ss_pred             CC
T ss_conf             77